Amel006701.1
Basic Information
- Insect
- Anopheles melas
- Gene Symbol
- -
- Assembly
- GCA_000473525.2
- Location
- KI922019.1:11687-24216[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.5 4.7e+03 -2.4 0.0 13 30 45 62 36 64 0.80 2 12 0.00084 2.6 8.0 0.1 21 43 81 103 73 112 0.86 3 12 0.0017 5.2 7.1 0.2 23 47 111 135 107 141 0.83 4 12 0.0046 14 5.7 0.1 23 48 139 164 135 169 0.85 5 12 0.0054 17 5.4 0.1 23 48 167 192 165 197 0.84 6 12 0.0038 12 5.9 0.0 23 48 195 220 192 225 0.84 7 12 0.37 1.1e+03 -0.4 0.0 23 48 223 248 219 253 0.80 8 12 0.012 37 4.3 0.0 23 49 251 277 247 282 0.85 9 12 0.37 1.2e+03 -0.4 0.0 23 49 279 305 276 310 0.82 10 12 0.37 1.2e+03 -0.4 0.0 23 51 307 335 299 338 0.82 11 12 0.063 2e+02 2.0 0.0 23 52 335 364 332 365 0.85 12 12 0.03 94 3.1 0.0 23 46 363 386 359 389 0.87
Sequence Information
- Coding Sequence
- ATGCTCCAGCAGGATCATCTGGTTGACAATAAGCATTTTGTCGTGTCGCTATCCCTGGGCAATACGCTTATCAATCTCAACAAAATCAAGTGTCCACAGTGCCGGAAGCGTTTCGATACGATGGAGGAAATGGAACAGCATCGGACGAAGCATTTGACGGAGAACAAGTTTAAGTGCGAAATATGCAGCAAAGAATTTCCCAGCCATAGTTCCATGTGGAAGCACACCAAGGCACACACGGGCGAACGTCCTTTCGTTTGTCAGATTTGTAACAAAGGCTTCACGCAACTGGCCAACCTGCAACGACATGATCTCGTCCACAATGGATTAAAGCCGTTCAAGTGTCCCATCTGTGAAAAATGCTTTACCCAGCAAGCCAACATGCTGAAACATCAACTTCTGCATACCGGTCTTAAGCCGTACAAATGTCCGGTGTGCGAGAAAGCGTTCTCGCAACATGCAAACATGGTTAAACATCAAATGCTTCATACAGGATTAAAGCCGTACAAGTGTCCCGTTTGCGAAAAGGCATTTACGCAACACGCCAACATGATTAAACATCAAATGTTACATACTGGTCTCAAGCCATACAAATGTCCTGTTTGTGATAAAGCCTTTACGCAGCAGGCCAACATGGTGAAACATCAAATGTTGCACACCGGCCTTAAACCGTACAAATGTTCCACCTGCGGCAAGGCGTTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGGTATTAAACCGTACAAGTGTCCCACCTGTGACAAAGCATTTGCCCAGCAAGCGAACATGATGAAGCATCAAATGTTGCACACGGGATTGAAGCCGTACAAGTGCGGCACGTGCGACAAAGCGTTTGCCCAGCAGGCCAATATGGTCAAGCATCAGATGCTGCATACCGGTTTAAAACCGTACAAATGCAATACCTGTGGCAAGGCATTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGGAATAAAGCCATACAAATGCTCGGTTTGTGATAAAGCCTTTGCCCAGCAGGCCAACATGGTCAAACATCAGATGCTCCACAGCGGAATTAAACCATACAAATGTCCTACCTGCGACAAAGCATTTGCCCAGCAGGCGAACATGGTGAAGCATCAGATGCTCCATACGGTATATGTATTTGATTACTACAAGAATTCCACCTCACTTTCGAATGTAAACATTGTGAACTTTCACCATCCGCACATCTCCCACCTGCCGAACATATCGCACAAGATCCTGTCGCCGCTGTTCCACATTCCGCCGTTCAACAACAACCACAGCACATAA
- Protein Sequence
- MLQQDHLVDNKHFVVSLSLGNTLINLNKIKCPQCRKRFDTMEEMEQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQHANMIKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGLKPYKCSTCGKAFAQQANMVKHEMLHTGIKPYKCPTCDKAFAQQANMMKHQMLHTGLKPYKCGTCDKAFAQQANMVKHQMLHTGLKPYKCNTCGKAFAQQANMVKHEMLHTGIKPYKCSVCDKAFAQQANMVKHQMLHSGIKPYKCPTCDKAFAQQANMVKHQMLHTVYVFDYYKNSTSLSNVNIVNFHHPHISHLPNISHKILSPLFHIPPFNNNHST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101359;
- 90% Identity
- iTF_00104529; iTF_00095773; iTF_00096052;
- 80% Identity
- iTF_00104529; iTF_00095773; iTF_00096052;