Achr007097.1
Basic Information
- Insect
- Anopheles christyi
- Gene Symbol
- -
- Assembly
- GCA_000349165.1
- Location
- KB698780:1362-8582[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.29 3.2e+03 -2.3 0.0 13 30 45 62 36 64 0.80 2 12 0.00017 1.8 8.0 0.1 21 43 81 103 74 112 0.86 3 12 0.00036 3.9 7.0 0.2 23 47 111 135 107 140 0.84 4 12 0.00091 9.8 5.7 0.1 23 48 139 164 136 169 0.85 5 12 0.00097 11 5.6 0.1 23 48 167 192 163 197 0.85 6 12 0.00059 6.4 6.3 0.0 23 52 195 224 191 225 0.86 7 12 0.0024 26 4.4 0.0 23 49 223 249 220 254 0.85 8 12 0.072 7.8e+02 -0.4 0.0 23 48 251 276 247 281 0.82 9 12 0.085 9.2e+02 -0.6 0.0 23 47 279 303 271 308 0.82 10 12 0.0033 35 3.9 0.0 23 48 307 332 303 336 0.84 11 12 0.0032 34 4.0 0.0 21 45 333 356 330 362 0.87 12 12 1.4e-05 0.15 11.5 0.1 23 44 363 384 360 390 0.91
Sequence Information
- Coding Sequence
- ATGCTACAGCAGGATCACTTGGTTGACAATAAGCATTTTGTCGTATCGCTGTCCCTGGGCAATACGCTGATCAATCTCAACAAAATCAAGTGTCCACAGTGCCGAAAGCGTTTTGATACGATGGAGGAAATGGAACAGCATCGGACCAAGCATTTGACGGAGAACAAGTTTAAATGTGAAATATGTAGTAAAGAATTTCCCAGCCATAGTTCCATGTGGAAGCACACCAAGGCACACACCGGTGAACGTCCTTTCGTGTGCCAGATTTGCAACAAAGGCTTCACCCAACTAGCCAACCTCCAACGACATGATCTCGTCCACAATGGACTTAAGCCGTTCAAGTGTCCGATCTGTGAAAAATGCTTTACCCAACAAGCCAACATGCTAAAGCATCAACTTCTACATACTGGACTTAAGCCGTACAAATGTCCGGTGTGCGAGAAAGCGTTCTCGCAACATGCAAACATGGTCAAACATCAAATGCTTCATACAGGATTAAAACCGTACAAGTGTCCCGTTTGCGAAAAGGCATTTACGCAACACGCCAACATGATAAAACATCAAATGTTACATACTGGTCTCAAGCCATACAAATGTCCTGTTTGTGATAAAGCCTTTACGCAACAGGCCAACATGGTGAAACATCAAATGTTGCACACCGGTATTAAACCGTACAAGTGTCCCACCTGTGACAAAGCATTTGCCCAGCAAGCGAACATGATGAAGCATCAAATGTTGCACACGGGGTTGAAGCCGTACAAGTGCGGCACGTGCGACAAAGCGTTTGCCCAGCAGGCCAATATGGTCAAGCATCAGATGCTGCATACCGGTTTAAAACCGTACAAATGCAATACCTGTGGCAAGGCATTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGGCATCAAACCGTACAAATGCCCTACCTGCGATAAGGCATTTGCCCAGCAGGCAAACATGGTTAAGCATCAGATGCTCCATACGGGAGAGAAACCATTTAAATGCAAAAGCTGTGATAAGGCTTTCTCGCAAAACGCCAATCTGAAAAAGCACGAAATGGTACACCTCGGCATACGGCCCCACACCTGCCCGCTGTGCACGAAGTCCTACTCGCAGTATTCGAACCTGAAGAAGCATTTGCTGAGCCACCAGAAGCAGGCGATCAAGCAGGAACAGCAGAACGGTCAGGTGATGGCCATTCTCTACAGCTGCCAGACGTGCAAGATGCAGTTTGAGGATATTATCGAGTTCGAGCGCCACACCAGACGGTGC
- Protein Sequence
- MLQQDHLVDNKHFVVSLSLGNTLINLNKIKCPQCRKRFDTMEEMEQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQHANMIKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGIKPYKCPTCDKAFAQQANMMKHQMLHTGLKPYKCGTCDKAFAQQANMVKHQMLHTGLKPYKCNTCGKAFAQQANMVKHEMLHTGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQNANLKKHEMVHLGIRPHTCPLCTKSYSQYSNLKKHLLSHQKQAIKQEQQNGQVMAILYSCQTCKMQFEDIIEFERHTRRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101359;
- 90% Identity
- iTF_00101359;
- 80% Identity
- iTF_00095176;