Agam009535.1
Basic Information
- Insect
- Anopheles gambiae
- Gene Symbol
- -
- Assembly
- GCF_000005575.2
- Location
- NT:24431266-24443451[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.6 3.9e+03 -2.4 0.0 13 30 65 82 56 84 0.80 2 13 0.00087 2.2 8.0 0.1 21 43 101 123 93 132 0.86 3 13 0.0017 4.3 7.0 0.2 23 47 131 155 127 161 0.83 4 13 0.0047 12 5.6 0.1 23 48 159 184 155 189 0.85 5 13 0.0053 13 5.5 0.1 23 48 187 212 184 217 0.85 6 13 0.0037 9.3 6.0 0.0 23 49 215 241 212 246 0.85 7 13 0.42 1.1e+03 -0.6 0.0 23 47 243 267 239 274 0.81 8 13 0.38 9.5e+02 -0.5 0.0 23 48 271 296 268 302 0.82 9 13 0.48 1.2e+03 -0.8 0.0 23 47 299 323 296 328 0.80 10 13 0.063 1.6e+02 2.0 0.0 23 52 327 356 323 357 0.85 11 13 0.017 42 3.9 0.0 23 48 355 380 351 384 0.84 12 13 0.017 42 3.9 0.0 21 46 381 405 379 411 0.87 13 13 7.7e-05 0.19 11.3 0.2 23 44 411 432 407 438 0.91
Sequence Information
- Coding Sequence
- ATGTTCTACCCGCTGcAAACCCAATTCGATGATGGTGTGATAGAGCTAACACGGTCGGAAATGCTCCAGCAGGATCATCTGGTTGACAATAAGCATTTTGTCGTGTCGCTATCCCTGGGCAATACGCTTATCAATCTCAACAAAATCAAGTGTCCTCAGTGCCGGAAGCGTTTCGATACGATGGAGGAAATGGAACAGCACCGGACGAAGCATTTGACGGAGAACAAGTTCAAGTGCGAAATATGCAGCAAAGAATTTCCCAGCCATAGTTCCATGTGGAAGCACACCAAGGCACACACGGGCGAACGTCCTTTCGTTTGTCAGATTTGTAACAAAGGCTTCACCCAACTGGCCAACCTGCAACGACATGATCTCGTCCACAATGGACTAAAGCCGTTCAAGTGTCCCATCTGTGAAAAATGCTTTACCCAGCAAGCTAACATGCTGAAACATCAACTTCTGCATACCGGTCTTAAGCCGTACAAATGTCCGGTGTGCGAGAAAGCGTTCTCGCAACATGCAAACATGGTCAAACATCAAATGCTTCATACAGGATTAAAGCCGTACAAGTGTCCCGTTTGCGAAAAGGCATTTACGCAACACGCCAACATGATTAAACATCAAATGTTACATACTGgtCTCAAGCCATACAAATGTCCTGTTTGTGATAAAGCCTTTACGCAGCAGGCCAACATGGTGAAACATCAAATGTTGCACACCGGCCTTAAACCGTACAAATGTTCCACCTGTGGCAAGGCGTTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGGATTGAAGCCGTACAAGTGCGGCACGTGCGACAAAGCGTTTGCCCAGCAGGCCAATATGGTCAAGCATCAGATGCTGCATACCGGTTTAAAACCGTACAAATGCAATACCTGTGGCAAGGCATTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGGAATAAAGCCATACAAATGCTCGGTTTGTGATAAAGCCTTTGCCCAGCAGGCCAACATGGTCAAACATCAGATGCTCCACAGCGGAATCAAACCATACAAATGTCCTACCTGCGACAAAGCATTTGCCCAGCAGGCGAACATGGTGAAGCATCAGATGCTCCATACGGGAGAGAAACCATTCAAATGCAAAAGCTGTGATAAGGCTTTCTCACAAAACGCCAATCTGAAAAAGCACGAAATGGTACATCTCGGCATACGGCCCCACACCTGCCCGCTGTGCACGAAGTCCTACTCGCAGTATTCGAACCTGAAGAAGCATTTGCTGAGCCACCAGAAGCAGGCGATCAAGCAGGAGCAACAGAACGGTCAGGTGATGGCGTAA
- Protein Sequence
- MFYPLQTQFDDGVIELTRSEMLQQDHLVDNKHFVVSLSLGNTLINLNKIKCPQCRKRFDTMEEMEQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQHANMIKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGLKPYKCSTCGKAFAQQANMVKHEMLHTGLKPYKCGTCDKAFAQQANMVKHQMLHTGLKPYKCNTCGKAFAQQANMVKHEMLHTGIKPYKCSVCDKAFAQQANMVKHQMLHSGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQNANLKKHEMVHLGIRPHTCPLCTKSYSQYSNLKKHLLSHQKQAIKQEQQNGQVMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101359;
- 90% Identity
- iTF_00101359;
- 80% Identity
- iTF_00102499;