Afar005463.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- -
- Assembly
- GCA_000473445.2
- Location
- KI915041.1:13551727-13563607[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 5.7e+03 -2.9 0.0 13 30 65 82 59 84 0.81 2 13 0.00086 2.8 7.7 0.1 21 43 101 123 94 132 0.86 3 13 0.0018 5.9 6.7 0.2 23 47 131 155 127 160 0.84 4 13 0.0046 15 5.3 0.1 23 48 159 184 156 189 0.85 5 13 0.0051 17 5.2 0.1 23 48 187 212 184 217 0.85 6 13 0.0027 8.7 6.1 0.0 23 52 215 244 213 246 0.87 7 13 0.35 1.1e+03 -0.7 0.0 23 48 243 268 240 273 0.80 8 13 0.016 50 3.7 0.1 23 48 271 296 267 304 0.85 9 13 0.32 1e+03 -0.5 0.0 24 52 300 328 297 330 0.83 10 13 0.02 65 3.3 0.0 23 52 327 356 321 357 0.86 11 13 0.017 55 3.5 0.0 23 48 355 380 352 384 0.84 12 13 0.0094 30 4.4 0.0 21 45 381 404 379 410 0.87 13 13 7.3e-05 0.24 11.1 0.1 23 44 411 432 408 438 0.91
Sequence Information
- Coding Sequence
- ATGTTCTACCCGCTGCAATCTCAGTTCGAGGATGGGGTAATTGAGCTGACACGTTCGGAAATGCTCCATCAGGACTCATTAGCTGACAATAAGCACTTCGTCGTATCCCTATCCTTAGGAAATACGCTCATCAATCTCAACAAAATCAAGTGTCCACAATGTCGGAAGCGTTTTGATACGATGGAGGAAATGGAACAGCATCGGACCAAGCATTTGACGGAGAACAAATTTAAATGTGAAATATGTAGCAAGGAGTTTCCCAGCCATAGTTCCATGTGGAAGCACACCAAGGCGCATACCGGTGAACGTCCTTTCGTGTGCCAGATATGCAACAAAGGCTTCACCCAGCTGGCCAACCTTCAACGGCATGATCTCGTCCACAACGGACTTAAACCCTTCAAATGTCCAATTTGTGAAAAATGTTTTACTCAACAAGCCAACATGCTAAAGCATCAGCTACTTCATACGGGTCTTAAACCGTATAAATGTCCCGTGTGCGAGAAAGCGTTCTCGCAACATGCAAACATGGTCAAACATCAAATGCTGCACACAGGACTGAAGCCGTACAAGTGTCCGGTATGCGAAAAGGCATTTACGCAGCACGCGAACATGATCAAGCATCAAATGCTCCACACCGGTCTCAAACCATATAAATGTCCTGTTTGTGACAAAGCCTTCACCCAGCAGGCCAACATGGTGAAACATCAAATGTTGCATACCGGCGTTAAACCGTACAAATGTTCCACCTGTGGAAAGGCTTTTGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTGCATACCGGTATCAAACCGTACAAGTGTCCCACCTGTGACAAAGCATTTGCCCAGCAAGCAAACATGATGAAACATCAAATATTGCATACGGGATTGAAGCCGTACAAGTGCGGTACCTGCGACAAAGCGTTTGCCCAGCAGGCCAATATGGTCAAACATCAGATGCTACATACGGGAATCAAACCCTACAAATGTTCCATTTGCGATAAAGCCTTTGCCCAGCAGGCCAACATGGTCAAACATCAGATGCTTCACAGCGGAATCAAACCGTACAAATGTCCCACTTGCGATAAAGCCTTTGCCCAGCAGGCGAACATGGTTAAGCATCAGATGCTCCATACGGGAGAAAAACCGTTCAAATGCAAAACCTGTGATAAGGCTTTCACGCAGAACGCTAACCTAAAGAAGCACGAAATGGTACACCTCGGCATCCGGCCGCACACCTGCCCGCTGTGTACGAAGTCCTACTCGCAGTATTCGAACCTCAAGAAGCACTTGCTCAGCCACCAGAAGCAAGCGATCAAGCAGGAGCAGCAGAATGGGCAGGTGATGGCCATTCTTTACAGCTGCCAGACGTGCAAGATGCAGTTTGAGGACATCATCGATTCCCATCTGCCGCCCCACCCGCAGGATCATGGCCCCGGGACGGGCGGTGGGGGTGGCGATCTGCACCACCAGGTGAACTTCCACCATCCGCACATCTCGCACCTGCCGAACATATCGCACAAGATCCTATCGCCCCTGTTCCACATTCCGCCCTTCAACAACAACCACCACAGCACATAA
- Protein Sequence
- MFYPLQSQFEDGVIELTRSEMLHQDSLADNKHFVVSLSLGNTLINLNKIKCPQCRKRFDTMEEMEQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQHANMIKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGVKPYKCSTCGKAFAQQANMVKHEMLHTGIKPYKCPTCDKAFAQQANMMKHQILHTGLKPYKCGTCDKAFAQQANMVKHQMLHTGIKPYKCSICDKAFAQQANMVKHQMLHSGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKTCDKAFTQNANLKKHEMVHLGIRPHTCPLCTKSYSQYSNLKKHLLSHQKQAIKQEQQNGQVMAILYSCQTCKMQFEDIIDSHLPPHPQDHGPGTGGGGGDLHHQVNFHHPHISHLPNISHKILSPLFHIPPFNNNHHST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101359;
- 90% Identity
- iTF_00101359;
- 80% Identity
- iTF_00100443;