Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063559.1:3849890-3862627[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8e-06 0.00053 20.9 2.0 1 23 424 446 424 446 0.97

2 20 0.0051 0.34 12.1 0.6 1 20 452 471 452 474 0.94

3 20 2.5e-05 0.0017 19.3 5.6 1 23 493 515 493 515 0.98

4 20 0.00012 0.0079 17.2 4.1 1 23 521 543 521 543 0.99

5 20 4.3e-05 0.0029 18.6 5.3 1 23 549 571 549 571 0.97

6 20 1.9e-06 0.00013 22.8 5.0 1 23 577 599 577 599 0.98

7 20 6.4e-07 4.3e-05 24.3 3.1 1 23 605 627 605 627 0.98

8 20 0.00012 0.0082 17.2 6.7 1 23 633 655 633 655 0.97

9 20 0.00012 0.0081 17.2 6.5 1 23 661 683 661 683 0.97

10 20 5.9e-07 3.9e-05 24.4 1.9 1 23 689 711 689 711 0.98

11 20 6e-05 0.004 18.1 7.9 1 23 717 739 717 739 0.98

12 20 6.9e-05 0.0046 17.9 7.8 1 23 745 767 745 767 0.97

13 20 1.7e-06 0.00011 23.0 5.3 1 23 773 795 773 795 0.98

14 20 1.1e-05 0.00074 20.4 6.0 1 23 801 823 801 823 0.97

15 20 0.00014 0.0096 16.9 7.5 1 23 829 851 829 851 0.97

16 20 3.7e-06 0.00025 21.9 6.0 1 23 857 879 857 879 0.98

17 20 4.4e-05 0.0029 18.6 8.3 1 23 885 907 885 907 0.97

18 20 8.4e-06 0.00056 20.8 5.1 1 23 913 935 913 935 0.98

19 20 0.00016 0.011 16.8 0.4 1 23 942 964 942 964 0.98

20 20 0.2 14 7.0 4.1 1 23 976 998 976 998 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8e-06	0.00053	20.9	2.0	1	23	424	446	424	446	0.97
2	20	0.0051	0.34	12.1	0.6	1	20	452	471	452	474	0.94
3	20	2.5e-05	0.0017	19.3	5.6	1	23	493	515	493	515	0.98
4	20	0.00012	0.0079	17.2	4.1	1	23	521	543	521	543	0.99
5	20	4.3e-05	0.0029	18.6	5.3	1	23	549	571	549	571	0.97
6	20	1.9e-06	0.00013	22.8	5.0	1	23	577	599	577	599	0.98
7	20	6.4e-07	4.3e-05	24.3	3.1	1	23	605	627	605	627	0.98
8	20	0.00012	0.0082	17.2	6.7	1	23	633	655	633	655	0.97
9	20	0.00012	0.0081	17.2	6.5	1	23	661	683	661	683	0.97
10	20	5.9e-07	3.9e-05	24.4	1.9	1	23	689	711	689	711	0.98
11	20	6e-05	0.004	18.1	7.9	1	23	717	739	717	739	0.98
12	20	6.9e-05	0.0046	17.9	7.8	1	23	745	767	745	767	0.97
13	20	1.7e-06	0.00011	23.0	5.3	1	23	773	795	773	795	0.98
14	20	1.1e-05	0.00074	20.4	6.0	1	23	801	823	801	823	0.97
15	20	0.00014	0.0096	16.9	7.5	1	23	829	851	829	851	0.97
16	20	3.7e-06	0.00025	21.9	6.0	1	23	857	879	857	879	0.98
17	20	4.4e-05	0.0029	18.6	8.3	1	23	885	907	885	907	0.97
18	20	8.4e-06	0.00056	20.8	5.1	1	23	913	935	913	935	0.98
19	20	0.00016	0.011	16.8	0.4	1	23	942	964	942	964	0.98
20	20	0.2	14	7.0	4.1	1	23	976	998	976	998	0.98

Sequence Information

Coding Sequence: ATGAATCCTGAACACCATAGTATCAATGCGGGTGGTGGCCAACCTCCTGGAAGTTCGGAGTCTCAGAACCAGAGAATTCAAAATACACAGCAACAACAAGCCAATAATCTGCCAGCCACTACTTCAGCGACGGACCTGCGTGTAAATTCCGTGAATTCGGCCGCTGTCAATGTTGCTTTGTCTAGCGTCGCTAAATACTGGGTATTTACAAATCTGTTCCCTGGGCCCATACCTCAAGTTTCTGTGTATGGACTTCCTACAGGAACAAGAATTGAAAATGGAAAACCTGTCCaggaTCTGGGTACGGCCCATGCTAGTATTCTCAATGGGGATCCAAACATCATACTTGGCCATCACTCCGGGCAGCCACAGGTTACTGTATCAGCAGCTGGTACACAACAAATACCTGTGTCTCAAATTATTGCTGCTCAATCTGGCCAAACTCATgAAGCTTTGGTCGCCCACAATCAGCAAGAACTGGCTGCCCAGCAAGCTTCAGGTGGAACCCAGGTCACGGCTACTCATCAGCAAGTACCCAATAGTCGGGTCGAGTTTGTACAGCACCATAACATTGATATGGTAAATAATGTGGGGCATCATTCACAACAGCATTTGATGCAGCAGCAACTGATGAGCGGAACACGTCAGGAGCACACAAATCAACAGaTACAACTGACAGTCAGCGAAGATGGCATTGTCACGGTGGTGGAGCCCGGAGGTGGGAAGTTGGTGGACAAGGAGGAGCTTCACGAAGCCATCAAAATGCCCACGGACCACCAGACACTTACTGTTCACCAATTACAGCAAATTGTTGGACAGCAGGTAATAGATAGCGTCGTCAGAATTGAGCAAGCCACAGGTGAACCTGCAAACATCCTAGTTACTCACAATCCCGACGGAACCACGTCTATAGAAGCGAGTGCAGCAGACCCGCTGATAGTCAAAGATGAGAAGAATACCGGTAAAATTGAAACGGCACAGTTCGCGATACCGACGGAAATAAAGGATATCAAGGGAATCGATCTAAAGAGCGTTGGAGCTATGGGTATGGAAGGTGCAGTGGTGAAGATATCTGCTGGAGCAGCAGATCACGATCTCCACGCGATGTACAAAGTGAATGTTGAAGATCTTTCACAACTGCTGGCGTACCATGAGGTGTTTGGGAAGCTAAACACGGAGGGACAGCAGCAAGCTAAAgtCATCAGCGAAGTGGAAGTAGAAGCGGGTACAAGTGCAGCCATGTCGGAGTCAGAGTCCTCGCCGGGGCAGCACTCGTGCGATATCTGCGGAAAGACCTTCCCGTTTAGATACCAACTCATTGTTCACAGACGATACCACGGCGAGAGCAAGCCATTCACGTGCCAAGTTTGCGGCTCCGCTTTCGCCAACCCTGTTGAATTGTCCAGGCACGGAAAATGCCACCTTGCAGGTGACCCGGCCGAACGCAACGCAAAGAGATTGACTCAAGACAAACCTTACGCTTGCACAACTTGCCATAAAACCTTTTCGCGTAAGGAGCACCTTGATAATCATGTACGCAGCCACACTGGAGAGACGCCTTATAGATGTGAATTCTGCGCGAAGACTTTCACGCGCAAAGAGCATATGGTGAACCATGTCCGCAAACACACGGGCGAAACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACTAGGAAGGAGCACTTCATGAACCATGTCATGTGGCATACAGGTGAAACGCCGCACCAATGTCAAATTTGCGGCAGGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGGTCACACACAAACGATACTCCATTCCGATGCGATCTTTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATTATGTGGCACACGGGCGAGACGCCACACCGCTGCGATTTCTGTTCCAAAACATTCACGCGCAAGGAGCACTTATTGAATCATGTGAGACAACACACGGGGGAATCCCCGCACCGATGCAACTTCTGCTCCAAGTCGTTCACGCGCCGCGAACATCTCGTGAATCATGTCAGACAACACACGGGAGAGACACCCTTCCAGTGCGGATACTGTCCCAAGGCATTCACTAGGAAAGACCATCTCgTAAACCACGTGAGACAACACACGGGCGAGTCTCCACACAAGTGCTCGTTCTGTACCAAGTCGTTCACCCGCAAGGAACACCTCACTAACCACGTCCGCCAGCACACCGGAGAATCACCCCATCGGTGTACATTCTGTTCGAAATCTTTCACGAGGAAAGAACATCTAACCAATCATGTCAGGCAGCACACGGGGGAAACTCCACACAAGTGCACGTATTGCCCTCGAGCGTTCTCCCGGAAGGAGCACCTCACCAACCACATCCGGCAGCACACCGGAGACATGCCCCACTCCTGCTCGTACTGCAACAAGAGCTTCACGAGGAAGGAGCACCTTGTCAATCATGTCAGACAACACACCGGCGAGACTCCGTTCAAGTGCACGTTCTGCACGAAATCGTTCTCGCGCAAGGAGCACCTCACCAACCACGTGCATCTCCACACGGGGGAGACGCCGCATAAGTGTCCTTTCTGCACCAAGACCTTCTCAAGGAAGGAGCATTTGACCAATCATGTCAGAATCCACACGGGCGAGTCGCCCCATCGGTGTGAATTCTGCCAGAAGCGGTTTACACGGAAAGAACACCTCACGAACCATATGAAGCAGCATACGGGCGACACGCCACATACGTGCAAAATCTGTTCCAAGCCATTTACTAGGAAAGAACATCTTGGAACGCATATGagATCACACAGTTGCGGCGAGCGTCCGTTCAGCTGCGGTGAATGCGGCAAGTCTTTCCCGTTGAAAGGCAACCTTCTGTTCCATCAGCGGTCGCACAACAAGACCAACAGCGGCGCTACCCCCACACCATTTCGATGTGATGTCTGTTCGAAGGAATTCCTTTGTAAAGGCCACCTGGTGGCGCACCGGCGCACACACGACGAGGCCAGCGAGTGCTCGCCGGCGGCCGAGCGCGACGACTGCGACAAGCAGGAGCCGCAGGAGAGGAAACACGATATCATgatGACCACAGAGACTAGACCAGCAGAGACTAACGTCGTTCAAAATCcccaaaataatacaaatgtgATGCAAATAACCAAtcaaCAACAAGTTCGGTCGGTGCCGACGAGCGCGGCCGAGGTCCAGGCGGCCACCTTCACGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MNPEHHSINAGGGQPPGSSESQNQRIQNTQQQQANNLPATTSATDLRVNSVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGTAHASILNGDPNIILGHHSGQPQVTVSAAGTQQIPVSQIIAAQSGQTHEALVAHNQQELAAQQASGGTQVTATHQQVPNSRVEFVQHHNIDMVNNVGHHSQQHLMQQQLMSGTRQEHTNQQIQLTVSEDGIVTVVEPGGGKLVDKEELHEAIKMPTDHQTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKNTGKIETAQFAIPTEIKDIKGIDLKSVGAMGMEGAVVKISAGAADHDLHAMYKVNVEDLSQLLAYHEVFGKLNTEGQQQAKVISEVEVEAGTSAAMSESESSPGQHSCDICGKTFPFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPAERNAKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHQCQICGRKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLTNHIRQHTGDMPHSCSYCNKSFTRKEHLVNHVRQHTGETPFKCTFCTKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKRFTRKEHLTNHMKQHTGDTPHTCKICSKPFTRKEHLGTHMRSHSCGERPFSCGECGKSFPLKGNLLFHQRSHNKTNSGATPTPFRCDVCSKEFLCKGHLVAHRRTHDEASECSPAAERDDCDKQEPQERKHDIMMTTETRPAETNVVQNPQNNTNVMQITNQQQVRSVPTSAAEVQAATFTHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00704247;
90% Identity: iTF_00013314; iTF_00720583; iTF_00146634; iTF_01220819; iTF_00651961; iTF_00012223; iTF_01302592; iTF_00640652;
80% Identity: -