Basic Information

Insect: Plodia interpunctella
Gene Symbol: -
Assembly: GCA_027563975.2
Location: CM050473.1:6965869-6978632[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 6.8e-06 0.00039 21.0 1.2 1 23 416 438 416 438 0.96

2 20 9.9e-05 0.0057 17.3 0.1 1 23 444 466 444 466 0.98

3 20 2.3e-05 0.0013 19.3 5.6 1 23 485 507 485 507 0.98

4 20 0.00011 0.0061 17.2 4.1 1 23 513 535 513 535 0.99

5 20 3.8e-05 0.0022 18.6 5.3 1 23 541 563 541 563 0.97

6 20 1e-05 0.0006 20.4 7.9 1 23 569 591 569 591 0.97

7 20 5.5e-07 3.2e-05 24.4 3.0 1 23 597 619 597 619 0.98

8 20 0.00011 0.0064 17.2 6.7 1 23 625 647 625 647 0.97

9 20 0.00011 0.0063 17.2 6.5 1 23 653 675 653 675 0.97

10 20 5.3e-07 3.1e-05 24.5 1.9 1 23 681 703 681 703 0.98

11 20 5.4e-05 0.0031 18.1 7.9 1 23 709 731 709 731 0.98

12 20 6.2e-05 0.0036 17.9 7.8 1 23 737 759 737 759 0.97

13 20 2.5e-05 0.0015 19.2 5.4 1 23 765 787 765 787 0.98

14 20 3.1e-06 0.00018 22.0 6.1 1 23 793 815 793 815 0.97

15 20 2.5e-05 0.0015 19.2 7.3 1 23 821 843 821 843 0.97

16 20 3.3e-06 0.00019 21.9 6.0 1 23 849 871 849 871 0.98

17 20 3.9e-05 0.0023 18.6 8.3 1 23 877 899 877 899 0.97

18 20 1.1e-05 0.00064 20.3 6.4 1 23 905 927 905 927 0.98

19 20 0.00079 0.046 14.5 0.3 1 23 934 956 934 956 0.96

20 20 0.3 18 6.3 4.2 1 23 967 989 967 989 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	6.8e-06	0.00039	21.0	1.2	1	23	416	438	416	438	0.96
2	20	9.9e-05	0.0057	17.3	0.1	1	23	444	466	444	466	0.98
3	20	2.3e-05	0.0013	19.3	5.6	1	23	485	507	485	507	0.98
4	20	0.00011	0.0061	17.2	4.1	1	23	513	535	513	535	0.99
5	20	3.8e-05	0.0022	18.6	5.3	1	23	541	563	541	563	0.97
6	20	1e-05	0.0006	20.4	7.9	1	23	569	591	569	591	0.97
7	20	5.5e-07	3.2e-05	24.4	3.0	1	23	597	619	597	619	0.98
8	20	0.00011	0.0064	17.2	6.7	1	23	625	647	625	647	0.97
9	20	0.00011	0.0063	17.2	6.5	1	23	653	675	653	675	0.97
10	20	5.3e-07	3.1e-05	24.5	1.9	1	23	681	703	681	703	0.98
11	20	5.4e-05	0.0031	18.1	7.9	1	23	709	731	709	731	0.98
12	20	6.2e-05	0.0036	17.9	7.8	1	23	737	759	737	759	0.97
13	20	2.5e-05	0.0015	19.2	5.4	1	23	765	787	765	787	0.98
14	20	3.1e-06	0.00018	22.0	6.1	1	23	793	815	793	815	0.97
15	20	2.5e-05	0.0015	19.2	7.3	1	23	821	843	821	843	0.97
16	20	3.3e-06	0.00019	21.9	6.0	1	23	849	871	849	871	0.98
17	20	3.9e-05	0.0023	18.6	8.3	1	23	877	899	877	899	0.97
18	20	1.1e-05	0.00064	20.3	6.4	1	23	905	927	905	927	0.98
19	20	0.00079	0.046	14.5	0.3	1	23	934	956	934	956	0.96
20	20	0.3	18	6.3	4.2	1	23	967	989	967	989	0.98

Sequence Information

Coding Sequence: ATGAATCCCGAGCACCATAGTATCAATACGGGTGGTGGCCAGCCTCCTGGAACTTCTGAGTCTCAAAGCCAACGGATCCAAAATGCCCAACAACAGCAGAGTAACATGCCCGCCACTACTTCAGCAACGGACTTGCGAGTAAATTCCGTGAATTCAGCAGCCGTCAACGTTGCTTTGTCTAGTGTCGCAAAATATTGGGTGTTTACAAATCTTTTTCCGAGCCCCATACCTCAAGTTTCCGTATATGGACTGCCTACAGGCACAAGAATTGAAAATGGAAAACCTGTTCAGGATTTGGGCCAAACCCACGCTAGCATACTCAATGGGGATCCAAATATCATACTCGGTCATCACACTGGACAACCACAAGTCACAGTGTCGGCTGCTGGTGCACAACAGATACCAGTGTCTCAAATCATTGCAGCACAATCCGGTCAAACTCATGAAGCTCTGGTGGCTCACAGTCAGCAAGAATTGGCTGCCCAGCAAGCTTCCAGTGCAGCTCAGGTGGCTACTACTCACCAGCAGGTACCCAATAACCGGGTCGAATTTGTACAACACCATAATGTTGATATGGGGCATCATTCACAACAACATTTGATGCAGCAGCAGCTGATGGCTGGGTCGCGGCAGGAGCATACAAATCAACAGATCCAACTGACTGTCAGTGAAGATGGCATCGTCACAGTGGTGGAGCCCGGGGGCGGGAAGCTAGTGGACAAAGAGGAGCTCCACGAAGCTATCAAGATACCCACAGACCACCAGACACTTACTGTTCACCAATTACAGCAAATTGTTGGACAGCAGGTAATAGACAGTGTGGTCCGCATTGAGCAGGCGACGGGCGAGCCCGCCAACATCCTGGTGACTCACAACGCGGACGGCACCACCTCCATCGAGGCCAGCGCCGCGGACCCGCTCATCGTCAAGGACGAGAAGAGCTCAAAGATAGAGACTGCGCAGTTTGCTATACCTGCCGAAATCAAGGACATCAAGGGAATCGATTTGAAGAGTGTTGGTGCGATGGGAATGGAAGGAGCTGTGGTGAAGATATCTGCTGGAGCGTCAGACCACGACCTCCATGCTATGTATAAAGTGAATGTGGAAGATCTGTCGCAACTGCTGGCGTACCACGAGGTCTTCGGGAAGCTAAACACGGAGGGGCAGCAACAATCTAAAGTGATCAGCGAGGTGGAGGTGGAGGCGGGCACGAGCGCGGCGCTGGAGGAGTCGTCGCCCGGACAGCACGCCTGCGACATCTGCGGGAAGAGCTTCCCCTTCAGATACCAGCTCATCGTTCATAGACGATACCATGGTGAAAGCAAGCCATTTACGTGTCAAGTATGCGGCTCTGCGTTTGCCAACCCTGTCGAACTGTCAAGGCATGGGAAAACTCACCTTGCTGGAGACCCCGCGGAACGCAATGCCAAGCGACTAACTCAAGACAAGCCCTACGCCTGCACAACTTGCCATAAAACTTTCTCGCGCAAAGAACATCTCGACAATCATGTCCGCAGTCACACAGGAGAAACGCCTTATAGATGCGAGTTCTGCGCAAAGACATTCACCCGTAAGGAGCATATGGTTAACCACGTGCGGAAACACACGGGCGAGACTCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGAGGAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAATGAACCATATGAGGTCACACACAAACGATACTCCGTTCCGATGCGAACTTTGCGGCAAGTCCTTCACGAGAAAGGAACACTTCACCAATCACATTATGTGGCATACGGGCGAGACGCCGCACCGATGCGACTTCTGTTCCAAAACCTTCACTCGCAAGGAGCACCTCTTGAACCACGTGAGACAACATACGGGCGAGTCTCCGCACCGCTGCAACTTCTGTTCGAAATCCTTCACGCGCCGCGAACATCTCGTGAACCACGTGAGACAACACACGGGGGAGACCCCCTTCCAATGTGGATATTGTCCAAAAGCCTTCACCAGAAAAGACCATCTCGTGAATCACGTCCGGCAACACACGGGCGAGTCTCCGCACAAGTGTTCATTTTGCACCAAATCGTTCACCCGCAAGGAGCACCTCACGAACCACGTCCGCCAACATACCGGGGAATCCCCGCACCGGTGTACTTTCTGCTCCAAATCCTTTACCAGAAAAGAACATTTAACCAATCATGTCAGACAGCACACTGGCGAAACCCCACACAAGTGCACGTTCTGCCCGCGCGCGTTCTCTCGTAAGGAGCACCTCAACAACCACGTGCGGCAGCACACGGGCGACATGCCGCACTCCTGCTCCTACTGCAACAAGAGCTTCACCAGGAAGGAGCATCTCGTCAACCATATCAGACAACACACAGGCGAGACGCCGTTCAAGTGCACGTATTGCACCAAGTCGTTCTCACGTAAGGAGCACCTCACCAACCACGTGCATCTCCACACGGGGGAGACGCCGCACAAGTGTCCTTTCTGCACCAAGACCTTCTCCAGGAAGGAGCATCTGACAAATCATGTCAgGATCCACACGGGCGAGTCCCCGCACCGCTGCGAGTTCTGCCAGAAGCGGTTCACACGCAAGGAGCACCTCACGAACCACATGAAGCAGCACACGGGCGACACGCCGCACACCTGCAAGGTTTGCTCCAAGACGTTCACTCGGAAGGAACATCTGGGAACGCACATGAGGTCGCACTGCTGCGGCGAACGGCCGTTCAGTTGCGGTGAGTGCGGCAAGTCGTTCCCGCTGAAAGGAAACCTGCTGTTCCACGAGCGCTCCCACAATAAGAATAACAGCGGAGGCTCCAGACCTTTCCGCTGCGATGTTTGTTCTAAGGACTTCCTATGTAAAGGACACCTGGTGGCGCACCGGCGCACGCACGACGCGGGCCAGGGCTCCCCGGCCGAGGCCGACGACTGCGACAAACAGGAGCCGCAGGACAGGAAGCACGACATCATGGCAACTACTGAGAACAGACCGGCAGAGACGAATGTCGTTCAAAACACCCAGACTAATTCAAATGTAATGCAAATAACCACTcagCAACAAGTCCGGTCGGTGCCGACGAGCGCGGGCGAAGTACAAGCCAGCAGCTTCAGTCACCAGCCCAGCTCGCACACCGCCACTCTCCACCATCCCGTCACCGTCAACTACTAG
Protein Sequence: MNPEHHSINTGGGQPPGTSESQSQRIQNAQQQQSNMPATTSATDLRVNSVNSAAVNVALSSVAKYWVFTNLFPSPIPQVSVYGLPTGTRIENGKPVQDLGQTHASILNGDPNIILGHHTGQPQVTVSAAGAQQIPVSQIIAAQSGQTHEALVAHSQQELAAQQASSAAQVATTHQQVPNNRVEFVQHHNVDMGHHSQQHLMQQQLMAGSRQEHTNQQIQLTVSEDGIVTVVEPGGGKLVDKEELHEAIKIPTDHQTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNADGTTSIEASAADPLIVKDEKSSKIETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAGASDHDLHAMYKVNVEDLSQLLAYHEVFGKLNTEGQQQSKVISEVEVEAGTSAALEESSPGQHACDICGKSFPFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKTHLAGDPAERNAKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLMNHMRSHTNDTPFRCELCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHVRQHTGETPHKCTFCPRAFSRKEHLNNHVRQHTGDMPHSCSYCNKSFTRKEHLVNHIRQHTGETPFKCTYCTKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKRFTRKEHLTNHMKQHTGDTPHTCKVCSKTFTRKEHLGTHMRSHCCGERPFSCGECGKSFPLKGNLLFHERSHNKNNSGGSRPFRCDVCSKDFLCKGHLVAHRRTHDAGQGSPAEADDCDKQEPQDRKHDIMATTENRPAETNVVQNTQTNSNVMQITTQQQVRSVPTSAGEVQASSFSHQPSSHTATLHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: iTF_00073027;
80% Identity: -