Basic Information

Insect: Rhodophaea formosa
Gene Symbol: -
Assembly: GCA_963082605.1
Location: OY720213.1:7483119-7507117[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 3.7e-05 0.003 18.8 2.0 1 23 428 450 428 450 0.96

2 21 0.0053 0.43 12.0 0.6 1 20 456 475 456 478 0.94

3 21 2.6e-05 0.0022 19.2 5.6 1 23 497 519 497 519 0.98

4 21 0.00012 0.01 17.1 4.1 1 23 525 547 525 547 0.99

5 21 4.5e-05 0.0036 18.5 5.3 1 23 553 575 553 575 0.97

6 21 1.2e-05 0.00097 20.3 7.9 1 23 581 603 581 603 0.97

7 21 6.4e-07 5.2e-05 24.3 3.0 1 23 609 631 609 631 0.98

8 21 0.00013 0.01 17.1 6.7 1 23 637 659 637 659 0.97

9 21 0.00013 0.01 17.1 6.5 1 23 665 687 665 687 0.97

10 21 6.1e-07 5e-05 24.4 1.9 1 23 693 715 693 715 0.98

11 21 6.3e-05 0.0051 18.1 7.9 1 23 721 743 721 743 0.98

12 21 7.2e-05 0.0059 17.9 7.8 1 23 749 771 749 771 0.97

13 21 1.8e-06 0.00014 22.9 5.2 1 23 777 799 777 799 0.98

14 21 0.0001 0.0085 17.4 6.1 1 23 805 828 805 832 0.95

15 21 4.6e-05 0.0037 18.5 7.5 1 23 838 860 838 860 0.97

16 21 0.00015 0.012 16.9 7.5 1 23 866 888 866 888 0.97

17 21 3.9e-06 0.00031 21.9 6.0 1 23 894 916 894 916 0.98

18 21 4.6e-05 0.0037 18.5 8.3 1 23 922 944 922 944 0.97

19 21 8.8e-06 0.00071 20.8 5.1 1 23 950 972 950 972 0.98

20 21 0.00069 0.056 14.8 0.3 1 23 979 1001 979 1001 0.96

21 21 0.35 29 6.3 4.2 1 23 1010 1032 1010 1032 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	3.7e-05	0.003	18.8	2.0	1	23	428	450	428	450	0.96
2	21	0.0053	0.43	12.0	0.6	1	20	456	475	456	478	0.94
3	21	2.6e-05	0.0022	19.2	5.6	1	23	497	519	497	519	0.98
4	21	0.00012	0.01	17.1	4.1	1	23	525	547	525	547	0.99
5	21	4.5e-05	0.0036	18.5	5.3	1	23	553	575	553	575	0.97
6	21	1.2e-05	0.00097	20.3	7.9	1	23	581	603	581	603	0.97
7	21	6.4e-07	5.2e-05	24.3	3.0	1	23	609	631	609	631	0.98
8	21	0.00013	0.01	17.1	6.7	1	23	637	659	637	659	0.97
9	21	0.00013	0.01	17.1	6.5	1	23	665	687	665	687	0.97
10	21	6.1e-07	5e-05	24.4	1.9	1	23	693	715	693	715	0.98
11	21	6.3e-05	0.0051	18.1	7.9	1	23	721	743	721	743	0.98
12	21	7.2e-05	0.0059	17.9	7.8	1	23	749	771	749	771	0.97
13	21	1.8e-06	0.00014	22.9	5.2	1	23	777	799	777	799	0.98
14	21	0.0001	0.0085	17.4	6.1	1	23	805	828	805	832	0.95
15	21	4.6e-05	0.0037	18.5	7.5	1	23	838	860	838	860	0.97
16	21	0.00015	0.012	16.9	7.5	1	23	866	888	866	888	0.97
17	21	3.9e-06	0.00031	21.9	6.0	1	23	894	916	894	916	0.98
18	21	4.6e-05	0.0037	18.5	8.3	1	23	922	944	922	944	0.97
19	21	8.8e-06	0.00071	20.8	5.1	1	23	950	972	950	972	0.98
20	21	0.00069	0.056	14.8	0.3	1	23	979	1001	979	1001	0.96
21	21	0.35	29	6.3	4.2	1	23	1010	1032	1010	1032	0.98

Sequence Information

Coding Sequence: ATGAATCCTGAGCACCACAGTATTAACACGGGTGGTGGCCAGCCTCCTGGAAGCTCTGAGTCTCAAAATCAAAGGATTCAGAATGCTCAGCAGCAGCAGGGCAATAATATGCCTGCCACGACGTCAGCTACGGATTTGCGAGTGAATTCTGTAAATTCGGCTGCCGTAAACGTCGCTTTGTCTAGCGTCGCCAAATACTGGGTATTTACAAATCTGTTCCCGGGTCCGATACCACAAGTTTCTGTGTATGGACTTCCTACAGGCACGAGAATCGAAAATGGAAAACCTGTCCAGGATTTGGGACAGGCTCATGCCAGCATCCTCAATGGGGATCCCAACATCATACTTGGCCACCACACTGGGCAGCCACAGGTCACTGTGTCTGCAGCCGGTGGACAGCAGATACCAGTATCTCAAATCATTGCAGCTCAATCTGGACAGACTCATGAAGCACTGGTGGCCCACAGTCAACAGCAAGAGTTGGCTGCTCAGCAGGCATCGGGTGGATCCCAGGTCACTGCAACTCACCAGCAGGTACCCAATAGTCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCATGTGGGGCATCATTCACAACAGCATTTGATGCAGCAGCAACTGATGGCTGGAGCACGTCAGGAACACACAAATCAACAGATCCAACTGACTGTCAGCGAAGACGGCATTGTGACAGTGGTGGAGCCTGGAGCCGGGAAGCTGGTTGACAAGGAGGAACTTCATGAAGCAATCAAGATGCCCACGGACCACCAGACACTTACTGTTCATCAATTACAGCAAATTGTTGGACAGCAGGTTATAGATAGTGTAGTCCGCATCGAGCAGGCCACTGGTGAGCCAGCCAACATCTTAGTGACGCACAACCCTGACGGCACCACGTCTATCGAGGCAAGTGCCGCCGACCCGCTCATAGTGAAGGATGAGAAGAATTCGGGCAAGATTGAAACAGCACAATTCGCCATTCCAGCAGAGATAAAGGATATCAAAGGAATCGATTTGAAGAGTGTAAGTGCAATGGGTATGGAGGGAGCCGTAGTGAAGATATCAGCCGGAGCCACGGACCACGATCTCCACGCTATGTACAAAGTCAATGTGGAAGATCTCTCGCAGCTGCTGGCCTATCATGAAGTATTTGGAAAGCTGAACACAGATGGGCAGCAACAGGCGAAAGTCATTAGTGGTGGAGTCGAGGTAGAAGTAGAAGCTGGCACGAGCGCCGCTATGTCTGAGTCAGAGTCATCGCCAGGACATCACGCCTGCGACATCTGTGGCAAGAGCTTCCAGTTCAGATACCAACTCATTGTTCATAGACGATATCACGGCGAAAGCAAGCCGTTCACCTGTCAAGTATGCGGCTCAGCCTTTGCCAACCCTGTGGAGCTCTCAAGACACGGAAAATGTCATCTTGCCGGTGACCCAGCCGAACGCAACGCCAAGAGATTGACGCAGGACAAACCTTACGCTTGCACCACTTGCCATAAAACGTTCTCCCGAAAGGAGCATCTGGACAATCACGTCCGTAGTCATACTGGAGAGACGCCTTACAGATGCGAGTTCTGCGCTAAAACATTTACACGCAAGGAGCATATGGTGAACCACGTGCGCAAGCACACGGGGGAAACTCCTCACCGATGCGAGATCTGCAAGAAGAGCTTCACCAGGAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGTGAAACGCCGCACCATTGCCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAATGAACCATATGAGGTCGCACACAAACGATACTCCGTTCCGATGCGAACTATGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATTATGTGGCATACGGGCGAGACGCCCCATCGCTGCGACTTCTGTTCGAAAACGTTCACTCGCAAGGAGCACCTACTAAACCACGTCCGGCAACACACGGGGGAGTCCCCGCATCGCTGCAACTTCTGCTCCAAGTCGTTCACGAGACGGGAGCACCTCGTCAACCATGTGCGGCAGCACACCGGGGAAACCCCCTTCCAGTGCGGCTACTGCCCCAAGGCCTTCACTAGGAAAGACCACCTTGtaaaCCACGTCAGACAGCACACAGGGGAATCGCCGCACAAGTGTTCGTTCTGTACGAAATCCTTCACTCGAAAAGAACATTTGACCAATCACGTGCGTCAGCACACGGGTGAATCCCCGCACCGATGTACCTTCTGTTCCAAGTCCTTCACTAGGAAAGAGCATTTAACCAATCATGTCAGACAGCACACGGGCGAAACTCCACACAAGTGCACGTACTGCCCGCGCGCATTCTCGCGCAAGGAGCATCTCAACAACCACATCCGGCAACACACCGGCGACATGCCACACTCCTGCACCTACTGCAGCAAGAGCTTCACGCGGAAGGAGCATCTCGTCAACCACCTTCTCAACAACCACATCCGGCAACACATCGGCGACATGCCGCACTCCTGCACCTACTGCAGCAAGAGCTTCACGCGGAAGGAGCATCTCTTCAACCACGTCAGGCAACACACAGGCGAAACCCCGTTCAAGTGCACGTTCTGCACGAAGTCGTTCTCGCGCAAGGAGCACCTCACCAACCACGTGCATCTGCACACCGGGGAGACGCCGCACAAGTGCCCCTTCTGCACCAAGACCTTCTCCAGGAAGGAACACTTGACCAACCACGTCAGGATCCACACGGGCGAATCCCCGCACCGCTGTGAGTTCTGTCAGAAGAGGTTTACGCGCAAAGAGCACCTCACGAACCATATGAAACAGCATACAGGAGACACACCACATACATGCAAGATTTGCTCGAAGCCTTTCACTAGGAAGGAACATCTAGGAACGCACATGAgATCACACAGTTGCGGAGAACGTCCATACAGCTGCGGAGAGTGCGGAAAATCTTTCCCGCTGAAAGGAAACCTGCTGTTCCACGAACGCTCGCACAACAAGACGGCCGGCGCGAGGCCCTTCCGGTGTGACGTTTGTTCCAAGGACTTCCTTTGCAAAGGTCACTTGGTGGCTCACCGGCGCACGCACGGCGAGGCGGGCGAGTGCGAGGCGCTGGCCGACGCCGAAGACTGCGCCGACACCAAAAACTGCATCAAGCAGGACCCGCCCGAGCAGAAGCACGACATCATGGCAACAGTTGAAAACAGACCAGCAGAGACGACAAATGTGGTGCAAAACCCCCAAAATAACACAAGTGTGATGCAAATAACAACTCAGCAGCAAGTGCGCACAGTGCCGACGAGCGGGGCGGAGCAGGGCGCGACGTTCGCGCACCCGGCCGGCGCCGCGCCCGCGCTACACCACCCTGTCACGGTCAACTACTAG
Protein Sequence: MNPEHHSINTGGGQPPGSSESQNQRIQNAQQQQGNNMPATTSATDLRVNSVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHHTGQPQVTVSAAGGQQIPVSQIIAAQSGQTHEALVAHSQQQELAAQQASGGSQVTATHQQVPNSRVEFVQHHNIDMVNHVGHHSQQHLMQQQLMAGARQEHTNQQIQLTVSEDGIVTVVEPGAGKLVDKEELHEAIKMPTDHQTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKNSGKIETAQFAIPAEIKDIKGIDLKSVSAMGMEGAVVKISAGATDHDLHAMYKVNVEDLSQLLAYHEVFGKLNTDGQQQAKVISGGVEVEVEAGTSAAMSESESSPGHHACDICGKSFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPAERNAKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLMNHMRSHTNDTPFRCELCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNNHIRQHTGDMPHSCTYCSKSFTRKEHLVNHLLNNHIRQHIGDMPHSCTYCSKSFTRKEHLFNHVRQHTGETPFKCTFCTKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKRFTRKEHLTNHMKQHTGDTPHTCKICSKPFTRKEHLGTHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKTAGARPFRCDVCSKDFLCKGHLVAHRRTHGEAGECEALADAEDCADTKNCIKQDPPEQKHDIMATVENRPAETTNVVQNPQNNTSVMQITTQQQVRTVPTSGAEQGATFAHPAGAAPALHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: iTF_00073027;
80% Identity: -