Basic Information

Gene Symbol
-
Assembly
GCA_000204515.1
Location
NW:1961421-1972878[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 5.6e-06 0.00034 20.2 1.0 1 23 252 274 252 274 0.98
2 32 0.0081 0.49 10.3 3.7 1 23 297 320 297 320 0.96
3 32 0.00055 0.033 13.9 0.5 2 23 327 349 326 349 0.96
4 32 0.00057 0.034 13.9 0.1 1 21 369 389 369 390 0.95
5 32 0.011 0.68 9.8 0.1 2 23 478 499 477 499 0.95
6 32 0.0029 0.18 11.7 0.4 1 23 505 528 505 528 0.91
7 32 0.00017 0.01 15.6 0.2 1 23 598 621 598 621 0.96
8 32 0.06 3.6 7.5 3.1 1 23 627 650 627 650 0.95
9 32 0.11 6.5 6.7 1.5 1 23 663 685 663 685 0.97
10 32 3.1e-05 0.0019 17.9 0.9 3 23 730 751 729 751 0.96
11 32 2.6 1.6e+02 2.4 0.4 1 23 782 805 782 805 0.92
12 32 0.0047 0.28 11.0 1.0 2 23 812 835 811 835 0.94
13 32 0.81 49 4.0 0.0 2 23 844 866 844 866 0.90
14 32 0.023 1.4 8.8 0.0 2 23 873 895 872 895 0.93
15 32 8e-05 0.0048 16.6 3.2 1 23 903 925 903 925 0.97
16 32 0.031 1.9 8.4 1.3 3 23 963 985 961 985 0.93
17 32 0.00019 0.011 15.4 3.3 1 23 988 1011 988 1011 0.97
18 32 0.00062 0.037 13.8 0.1 2 23 1018 1040 1017 1040 0.96
19 32 0.00082 0.049 13.4 3.9 1 21 1067 1087 1067 1088 0.95
20 32 0.0024 0.15 11.9 1.8 2 23 1102 1123 1101 1124 0.93
21 32 0.34 20 5.2 1.1 1 23 1127 1150 1127 1150 0.94
22 32 0.024 1.4 8.8 2.1 2 23 1157 1180 1156 1180 0.90
23 32 2.1 1.3e+02 2.6 0.1 2 23 1188 1210 1187 1210 0.94
24 32 2.9 1.8e+02 2.2 0.0 2 23 1217 1239 1216 1239 0.88
25 32 0.2 12 5.9 2.7 2 23 1248 1270 1248 1270 0.96
26 32 0.62 37 4.3 0.5 2 23 1276 1298 1275 1298 0.91
27 32 0.015 0.9 9.4 0.1 1 23 1360 1383 1360 1383 0.95
28 32 0.00015 0.0092 15.7 1.1 1 21 1411 1431 1411 1432 0.95
29 32 0.29 17 5.4 1.9 2 23 1533 1555 1532 1555 0.94
30 32 0.82 49 3.9 0.4 2 23 1562 1584 1561 1584 0.94
31 32 0.62 37 4.3 2.5 1 23 1595 1617 1595 1617 0.97
32 32 0.018 1.1 9.1 0.2 1 19 1621 1639 1621 1642 0.94

Sequence Information

Coding Sequence
ATGGCGACGATATCAACGATCACGACGACAACGTCGATGTCGACGTCAACGACGAGGATTGAGACAGCGATGGCGACAGAGCCGAGAAGGAATTATAACGAACTATGTCGCTTATGCGCTTCTTACGACGCCGTTAGGATGCACATATTTGGCCAGGAAGGCAAGAATCGTCAACTCGTCGACAAGATTGAAACGTGCTTGCCGTTCAAGATAATGGAAGATGATTATTTGCCAAAAGTCCTGTGTTATCGATGTATGTACAACTTGGAGAATTTCTATGACTTTAGGACTGCGTGTGTTAACGCAGCTGTTTTGTTGGAAAGAAATAGGCCGAAGGAAGGCGTGAGCGATGAAGATGCAAATGACACTGCGCAATCCTGCGAGATGCGCGCGGCATttcttaagaaagaaaatatgccAGTACTTATTCCAGAAGCACCCGTAGTCAATCCCAATGCAGCATTGGGTACGCCACCGAGATTAAATTCGGATGGTGAAGCAGATCCCGAGATCGAAGAGATTCTTGACACAAGTGAAGGTACGGATGAAGcCACAGTGATCGACGATTCGGAAGATCGACGATCGGAATATGAGATGGCATACGAAATGGACATGGAGACGAATCCTAGCGACTTCTTGGAAATGACTCCGATGGTAACCGAAGAAAATGAAGAGGAATGTAGTACAAACAACACGAATGTCGCGACTGCTCAAGATACGGTTTTTCCACATACGTCACAACAACATGAGGTCTACGTCTGTTCTCTATGCAACAAAGCGTTCAGTTCCAAGGGTCACTTGTCCCTGCACGCGAGGATTCACGTGGGTGAGGGTGATGTGATTGGCGAAAGAGTAATTACCGACGACCATACTTCGTACCAACGACCGTATCAATGTGATCTTTGTCATAAATCGTATTCTACTGCGAAGCATCGCTGGGGACACGTTTCTACAACGCATCGAGGACATCCTGCAGTAACGTGTGCGTACTGTTCTCGTATATACTCGACGCGATATAATCTCGATGAACATATAAAATCACGACATGCTGGGCTACCACCACCTCCAGAATTATCGGTTCCTCTAACGCGTACGGAAACACGTTACCAGTGCCAAACATGTCCGATGGTGTTTACGGATCTAGCAGATTTCAATGCGCATCGTCAGATATGCATCCAGGAACAACGTACAGATTTATTAGGTCAAACCGAAGcgcagaataataaaattttcgccGATACATCCGACATCTCAAGTATAGATTTGGATGACGAGAATAAAGACTTTAAGAATGCAACCATATTGAAACAGGCGCTGACTAAAGGAGATAATTTAAAACGGAATTTCGATGATGATGGTTCGACGTCTAGCGGCAAGccgaaaaaaatagttaagtcagAAGAAGGCGAGGCAAATCCTCAGAAGAGATGGTATTGTGAAGCTTGTCCACAAAGTTTTACATCAGTGGAGAGTTTAAAAGAACACGAGATTAGACACGATGCCGAAAAGCCATATATTTGCATACTATGCAACAaagattttgttttgaaatcttCATTAAATAGGCATATTACAATGTTACATGGTGTTGATCCTGCTCCTATCATCCACAGTGATAAGTGTCTAAAGGCAACAGTAATGTCTCAGAATTGGAACGATCGAGTGGACGTCAGCGTTTATGAGCAAAGTGAAATAAAAGACCCACCAGAGCTCTCGTCATCACCTGagataaatttagagAATGATGACAAGGATTATAAAAACCATGAGAATGTAGAAATTGAAACAGTATTTGTGTGTGAGACTTGTAAGCGAGATTTTAACGATCGAGCATCATTATGGCTGCACATACGAGCAATGCACAAGGAATATGCAGCATTTACCTGTGGAGTGTGTTTAAAGATGTGCTTTAATAATACACAACTTCAAAATCATGTCTTCATGTATCATGGAAGGTCTAAGCTTTTAATCTCGGAACAAAGAAGGTATAGTTGCACGATATGCGGTAGACAGCATGACTCGAGAAAAAAGCTAATCACTCATGTCTCGATACATAATGTCGATCCTGCCTATGATCCTGGAAGTTTTGTACAATTGAACAGTAATTATTACAACGAAAACTTGAATGGTAACGAAGGCAATGAACAAGTATTAGATTTTGACGGAGAAGATGGCGAGAAAGTTGATTGttacatttgttataaatcTTTTCCGACTGAGGATCATCTTATACGACATCAGAGAAATGCTCATAAGTCTGACCAGATTTCGTTAGGAGATGCTGCGAGTGGAAATACTCTAAGTGTCAATGGCAATGGTAATAGAGCGCAGTatcatttgttttttgtttgcgAGGTATGTGGTAGTTCACATTCGAGCAAATGGGAACGTTGGTTGCATATCAACAACACACATAATAATGAACCTTCTATTAAATGTGAATTGGAAAATTGCGGAAAAATATTTGCGACGAAATCGTTACGTAATGAACATCTTCAACATCATGCGATACAAGGACCCTCGCCAAACACCTGCGAGATATGTGGAAAATTATGGCCTACTCGCGTTGATTATTGGAAACACGTGATGGGCGTACACGCAGATACAGTGCCTCTAATTTGTGGCGTTTGTTTGAAAGTATTCTCCGACGTTATGCAATTGAGCGCACACGTTAAGGCGAAACATTGGCCACTAACCAGTGGTGATTTTTGTTGTGATATTTGCGGTAGACCATATTCCAATAAATCGAAAATGTCTCGGCATAGAAAGATCCATGGCTTGGAGGCGGCTATGGACGCTGCATGCGATAATAGCAGTTTTAATGAAACGACCAATGAATCGGTGAAACCTGATCACAGTAATGGCGCTTcagaaatagaattaaattgcGAGCAATGTCCTGAACTTAGTTTCACGACATTGGACAGTTTGTGTAATCATCGACGGATAACACATAATCTTTTCCCGTGCGATTTGTGTAACAAATGTTATGGCAGAACGTCACATTTATGGAAACATGTAAATAGGGTGCACAAAGGACACACAGACGTGACCTGTCCTTATTGCGCAAAGACAAGCGCATCAAGGGATCATCTAGCAGCACATATTGCAAAGATTCATAGGTTCATGCCCACAGTGGGTAAGGACAATCAAAACTGCGTCACTTCCAAGTCCTTGAGTGCAGACGATGGTGTCTTgcattattgtgaaaaatgtaacaaaggATTCCATAAACGCTACTTGCTCCGTCGTCATATGAAAGGTTGTCAAAACTATCGTAAAGATCCTGGGGCATTGTTGACTCGTTGCCGGGCCTGCGAGAGGATATTTAAAGATCGCGCGAGTCTGCAGAAACATATTGAAAATCATCATACTACATATACTTGCCATTTGTGTAATGAGACGATCACTTCCAAGCTAGGTATCATGACACATAATCGTATCAATCATATGGATCATCCGGATCTGACGTGCGACCATCCGAGCTGTAAAAAACTTTTCCGCACCAAAGAAGATTTGGAATCTCATCGAAAAGATCACAAATATCATAGCAATCTGGATGTTTGTGATTTTTGCGGTGACACCGTGGAAAATAAACTGAAACTGAAGATGCATGTATTATCATTGCATCGAAACGAGATCGGCGTATCCTGTGGGGTCTGTCTCATTCCAATGAAGGATCCCAAAGATTTGAAGAAACATGTCGAAGCGGTGCATAGCAGCGTTCTCTCTAAACCAAACACGTGTCAGGTATGTGGCAAGCAATATGCATCCAAATGGAAGGCTTTCGATCACACGAAGAAGTGTCATGGCAAAGTTTTTCTTACATGCAAACAGTGTTTAGCCGTTTTTACAGACGAGAATGATATACGCGATCACTATGAACATGTGCATAACGTTCCAAAGGACCAATTAGCTATTTTCGAATATAGAATGGATATTGGTGCAAAGAGGGAGGGTTACGAGACTCCTGATATCATTGTGAAGGAGGAACCTGATGATTTAGAGTTTGACGAAGAAATGTGTGACGAAAGTTCGAATGATTCTCGCAAACGTAGAAGATCGCCAAATGATACGTATGATTGCGAGATGTGTCCCGAGATCTTCCTCAATTCAGACACTCTCGCTAAGCATTATCAGAACGTCCATAATACAGACCCCGTCCGTATGTTCAAGAAATTCAGGAAGGATAATAGCGATGGCAAGCGCAAGATGAGAAATAGAAACAATTTTGAATGCAAGAATTGCAAAAAGCAATTCTCTACTAAGACTCTGTTCTGGAATCACATCAATGTATGTACACGACGAAACTCGATAGGTAGATTTGATATGCCGAATAATGTTCCGACATCAATTCTGGAGTCTCAtctaaaaaacaataatcagATTCAACGAGAAGAACCGGTACCGCTTACAAACGAGTCCAACTTGAACATTCCCGACTTCAATCTATTCGAAGACATCAATTTGCAATTGTCAGCTCAGAAACCTGTGCCGAATCTTATGCCATTGTCGCAGATGAAAGCGACGGGTAACGGCAAATGCTCGAGAAAAGACTCACGCAAGGTGTATGATGAATCAACCAATACCGAGTGTACGTGCGAAGTTTGCGGTAAACAATGGCCCGCCAAGAAACATTTGTGGCAACATCTAATTCGTTTCCATCGCGCTGAAGCTGCTGTTACATGTGGTGTATGTTTGAAATTGTGTAAATCTTATCAAGACTTGGCCGATCACCTGAAGGCTGAACATGCTCCCGTTTTGTCACCGGAGGGCAATAATTTCACATGTAAGACGTGCGGTAGATATCACAACGCGAGAAGCAAATTGCTGTTGCACATGAGCATCCATATCGGAAACTTCCGGTGTCAAAAGTGCCAGCAAGGTTTTGCAAGTGAGGAGAAACTCACCGAGCATGCAACGAGCTGCAATGGCAAATCGGAGTTTGAGGATAATACAGTGGCAGATGAAGATAATGCAAAGAATGACAACGACGAGAAGGGCAGTTTAATCGCCGATGAGACATCAGTCATTGAGGAAGCAGAGGAAGCGGAGGAAGCAGATTTTGAATCAGAAGGTGAAGGAAGTAGGGATATTCATGATAGAGATAATTCGGAAAATAGTGAAGAAGACAATTCGGAAAATAGTGATGATTCAGATAGCGATAGTAATAGTAGTTCGAGCGAAGACGAAAACGAAAATGAaggagaggaagaggaggaggaagaggaagaaaatgaaaacgaAAATGAATCTGATACGAGAACTACTAGTAGAGCGAGCGGTGATAGTGTATCATGTAATTCCGACAGTGACGATGAATCAGATATGGATGAAACGCAAGTGGACGCAACGGAAAAGAAAGCTATACAATTGAACGATATTAATAGATTCAGGATATGTGGTGACGGTATTCAAGAGAATATGCCAGTGGAGACAAATATTGAAGATCAGAAAACTGATCTTACATCCATAGCAACAGTTGCAGAACAGACTACatcgaataatttaaatgatctTTTGATTTCTAATGTACCTGGAAACATGGGCACTGACAAATTTGAAGCATTTCGTGTCGAAAAACTACAACAAGCTACGACGAGCGATGTAGACTCTGATAACGAAGACGATGATGATAACGAGGAAGATGATgaggaaaataatgaaaatgaagaagaagaagaagatggTGAAGAAGGTGATCAGGATGAAGGTGAAGATGAGGATGAAGGTGAGGCTGAGAGTGAGGCTGAAAGTGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAACGAGGATGAGGGTGAAGCTGCAGccgaggaagaggaagaagaagaggaagaagaggaggatGATGAAGATGACGATGATGGACCGCCTGTGTTAAGTCCAATAATGCCTTTGTTACCAGAAAATGAATCTGAGGAGTACAGCGGTACGACAGATCGCACGAGGCACAAGCTTAGTCCAATGGTTTCGTTGAGTATAGCTAAAGATCTAGAGGAGTGCGAAATAACCGAAATACCAAATGACACGGACAATATGTCAAACACAGTCAATTTCTTCGCggctaataataatgatttatccGTAACATGGGACGAGAATTTGGATGGTAACGTAATCAACAATGACGATTGCAACTCTGACGCTGGAAACAGGGAGAAAAATGAGGAATTTGATAAGGAATACGTAAAAATAGAAGTAAACGAAGGTGACTTTGAGGAAGATTCCGTGGATGAGAACGTAGTGGATAATAGAGAAGATGATGGAGATAATCAAGTGCATGAGGTGCATAATCTGGACGGAACAGTGTTAATGGTGACTAATGACGCGGAAggtaatcaaattttgatagaacAAAACGTGTTAGATATTGATAACGAGGACTCTAATATCGAAGCGGCCCAGTATATTTATCCAGAGAACACTTACGAGATCGAGGAAGAGGATTATCCAACGCGAAACGAAACCGACGTCATGCAGACGGACGAGATGCAAGGTAGTATGTCCTACGTTCAGGATACTTCGGAAAACGAAGATAGTATGCAGAATGATATCGAGGAAAACAGTGATGTGCAAAAACAGTAG
Protein Sequence
MATISTITTTTSMSTSTTRIETAMATEPRRNYNELCRLCASYDAVRMHIFGQEGKNRQLVDKIETCLPFKIMEDDYLPKVLCYRCMYNLENFYDFRTACVNAAVLLERNRPKEGVSDEDANDTAQSCEMRAAFLKKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEECSTNNTNVATAQDTVFPHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPLTRTETRYQCQTCPMVFTDLADFNAHRQICIQEQRTDLLGQTEAQNNKIFADTSDISSIDLDDENKDFKNATILKQALTKGDNLKRNFDDDGSTSSGKPKKIVKSEEGEANPQKRWYCEACPQSFTSVESLKEHEIRHDAEKPYICILCNKDFVLKSSLNRHITMLHGVDPAPIIHSDKCLKATVMSQNWNDRVDVSVYEQSEIKDPPELSSSPEINLENDDKDYKNHENVEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFNNTQLQNHVFMYHGRSKLLISEQRRYSCTICGRQHDSRKKLITHVSIHNVDPAYDPGSFVQLNSNYYNENLNGNEGNEQVLDFDGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQISLGDAASGNTLSVNGNGNRAQYHLFFVCEVCGSSHSSKWERWLHINNTHNNEPSIKCELENCGKIFATKSLRNEHLQHHAIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEAAMDAACDNSSFNETTNESVKPDHSNGASEIELNCEQCPELSFTTLDSLCNHRRITHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHTDVTCPYCAKTSASRDHLAAHIAKIHRFMPTVGKDNQNCVTSKSLSADDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTTYTCHLCNETITSKLGIMTHNRINHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNLDVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAVHSSVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHVHNVPKDQLAIFEYRMDIGAKREGYETPDIIVKEEPDDLEFDEEMCDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFRKDNSDGKRKMRNRNNFECKNCKKQFSTKTLFWNHINVCTRRNSIGRFDMPNNVPTSILESHLKNNNQIQREEPVPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQMKATGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASEEKLTEHATSCNGKSEFEDNTVADEDNAKNDNDEKGSLIADETSVIEEAEEAEEADFESEGEGSRDIHDRDNSENSEEDNSENSDDSDSDSNSSSSEDENENEGEEEEEEEEENENENESDTRTTSRASGDSVSCNSDSDDESDMDETQVDATEKKAIQLNDINRFRICGDGIQENMPVETNIEDQKTDLTSIATVAEQTTSNNLNDLLISNVPGNMGTDKFEAFRVEKLQQATTSDVDSDNEDDDDNEEDDEENNENEEEEEDGEEGDQDEGEDEDEGEAESEAESENENENENENENENENENENEDEGEAAAEEEEEEEEEEEDDEDDDDGPPVLSPIMPLLPENESEEYSGTTDRTRHKLSPMVSLSIAKDLEECEITEIPNDTDNMSNTVNFFAANNNDLSVTWDENLDGNVINNDDCNSDAGNREKNEEFDKEYVKIEVNEGDFEEDSVDENVVDNREDDGDNQVHEVHNLDGTVLMVTNDAEGNQILIEQNVLDIDNEDSNIEAAQYIYPENTYEIEEEDYPTRNETDVMQTDEMQGSMSYVQDTSENEDSMQNDIEENSDVQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2