Basic Information

Gene Symbol
-
Assembly
GCA_001594115.1
Location
NW:2648024-2663341[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 5.3e-06 0.00034 20.2 1.0 1 23 252 274 252 274 0.98
2 32 0.0077 0.49 10.3 3.7 1 23 297 320 297 320 0.96
3 32 0.00052 0.033 13.9 0.5 2 23 327 349 326 349 0.96
4 32 0.00014 0.0092 15.7 0.4 1 22 369 390 369 393 0.91
5 32 0.011 0.67 9.8 0.1 2 23 488 509 487 509 0.95
6 32 0.0043 0.27 11.0 0.2 1 23 515 538 515 538 0.91
7 32 0.00016 0.01 15.6 0.2 1 23 609 632 609 632 0.96
8 32 0.096 6.1 6.8 2.3 1 23 638 661 638 661 0.95
9 32 0.1 6.5 6.7 1.5 1 23 674 696 674 696 0.97
10 32 2.9e-05 0.0018 17.9 0.9 3 23 742 763 741 763 0.96
11 32 2.5 1.6e+02 2.4 0.4 1 23 795 818 795 818 0.92
12 32 0.0044 0.28 11.0 1.0 2 23 825 848 824 848 0.94
13 32 0.76 48 4.0 0.0 2 23 857 879 857 879 0.90
14 32 0.022 1.4 8.8 0.0 2 23 886 908 885 908 0.93
15 32 7.6e-05 0.0048 16.6 3.2 1 23 916 938 916 938 0.97
16 32 0.03 1.9 8.4 1.3 3 23 976 998 974 998 0.93
17 32 0.00055 0.035 13.8 1.6 1 23 1001 1024 1001 1024 0.97
18 32 0.00058 0.037 13.8 0.1 2 23 1031 1053 1030 1053 0.96
19 32 0.00078 0.049 13.4 3.9 1 21 1080 1100 1080 1101 0.95
20 32 0.0023 0.14 11.9 1.8 2 23 1115 1136 1114 1137 0.93
21 32 0.32 20 5.2 1.1 1 23 1140 1163 1140 1163 0.94
22 32 0.022 1.4 8.8 2.1 2 23 1170 1193 1169 1193 0.90
23 32 2 1.3e+02 2.6 0.1 2 23 1201 1223 1200 1223 0.94
24 32 2.8 1.7e+02 2.2 0.0 2 23 1230 1252 1229 1252 0.88
25 32 0.19 12 5.9 2.7 2 23 1261 1283 1261 1283 0.96
26 32 0.59 37 4.3 0.5 2 23 1289 1311 1288 1311 0.91
27 32 0.014 0.89 9.4 0.1 1 23 1373 1396 1373 1396 0.95
28 32 0.00014 0.0091 15.7 1.1 1 21 1424 1444 1424 1445 0.95
29 32 0.27 17 5.4 1.9 2 23 1546 1568 1545 1568 0.94
30 32 0.78 49 3.9 0.4 2 23 1575 1597 1574 1597 0.94
31 32 0.59 37 4.3 2.5 1 23 1608 1630 1608 1630 0.97
32 32 0.018 1.1 9.1 0.2 1 19 1634 1652 1634 1655 0.94

Sequence Information

Coding Sequence
ATGGCGACGATATCGACGATCACGACAACGTCGATGTCGACGTCAACGACGAGGATCGAGACAGCGATGGCGACGGAGCCGAGAAGGAACTATAACGAACTGTGTCGCTTATGCGCTTCTTACGACGCCGTTAGGATGCACATATTTGGCCAGGAAGGCAAGAATCGTCAACTCGTCGACAAGATTGAAACGTGCTTGCCGTTCAAGATAATGGAAGATGATTATTTGCCAAAAGTCCTATGTTATCGATGTATGTACAATTTGGAGAATTTCTATGACTTTAGGACTGCGTGTGTTAACGCAGCTGTTTTGTTGGAAAGAAATAGGCCGAAGGAAGGCGTGAGCGATGAAGGTGCAAATGACACTGCACAATCCTGCGAGATGCGCGCGGCGTTtcttaagaaagaaaatatgccAGTACTTATCCCGGAAGCACCCATAGTCAATCCCAATGCAGCATTGGGTACGCCACCGAGATTAAATTCGGATGGTGAAGCAGATCCCGAGATCGAAGAGATTCTTGACACAAGTGAAGGTACGGACGAAGcCACAGTGATCGACGATTCGGAAGATCGGCGATCGGAATATGAGATGGCATACGAAATGGACATGGAGACGAATCCTAGCGACTTCTTGGAAATGACCCCGATGGTAACCGAAGAAAATGAAGAGGAATGCAGTACAAACAACACGAATGCTGCGACTGCTCAAGATACCACGGTCTTTCCACATACATCACAACAACATGAGGTCTACGTCTGTTCTCTATGCAACAAAGCGTTCAGTTCCAAGGGCCATTTGTCTCTGCACGCGAGGATTCATGTGGGTGAGGGTGATGTGATTGGCGAAAGAGTAATTACCGACGACCATACTTCGTACCAACGACCGTATCAATGTGATCTTTGTCATAAATCGTATTCTACTGCGAAACATCGCTGGGGGCACGTTTCTACAACGCATCGGGGACATCCTGCAGTAACGTGTGCGTATTGTTCTCGTATATACTCGACGCGATATAATCTCGATGAACATATAAAATCACGACATGCTGGGCTACCACCACCCCCAGAATTATCGGTTCCTCTAACGCGTACGGAAACACGTTACCAGTGCCAAATATGTCCGATGGTGTTTACGGATCTAGCAGATTTCAATGCGCATCGTCAGATATGCATTCACGAACAACGTACAGATTTATTAGGTCAAACCGAAGcgcagaataataaaattttcgccGATACATCCGACGTCTCGAGTATAGATTTGGATGACGAGAATAAAGACTTTAAGAATGCCGAGGCTAAATTGGCGAAAAATCCACAATTAACTATATTGAAACAGGCGCTGACTAAAGGAGACAATTTAAAACGGAATTTCGATGATGATGGTTCGACGTCTAACAGCAAGccgaaaaaaatagttaagtcagaaGAAGGCGAGGCAAATCCTCAGAAGAGATGGTATTGTGAAGCTTGTCCACAAAGTTTTACATCAGTGGAGAGTTTAAAAGAACACGAAATTAGACACGATGCCGAAAAGCCATATATTTGCATACTATGCAACAAAgattttgttttgaaatcttCATTAATTAGGCATATTACAATGTTACATGGTGTTGATCCTACTCCTATCATCGACAGTGATAAGTGTCTAAAGGCAACAGTAATGTCTCAGAATTGGAACGATCGAGTGGACGTCAGCGTTTATGAGCAAAGTGAAATAAAAGACCCACCAGAGCTCTCGTCGTCACCTGagataaatttagaGAATGATGACAAGGATTATAAAAACAACCATGAGAATGTAGAAATTGAAACGGTATTTGTGTGTGAGACTTGTAAGCGAGATTTTAACGATCGAGCATCATTATGGCTGCACATACGAGCAATGCACAAGGAATATGCAGCATTTACCTGTGGAGTGTGTTTAAAGATGtgctttaataatatacaacttCAAAATCATGTCTTCATGTATCACGGAAAGTCTAAGCTTTTAATCTCGGAACAAAGAAGGTATAGTTGCACGATATGCGGTAGACAGCATGACTCGAGAAAAAAGTTAATCACTCATGTCTCTATACATAATGTCGATCCTGCCTATGATCCTGGAAGTTTTGTACAATTGaacagtaattattataatgaaaacttGAATGGTGGTAACGAAGGCAATGAACAAGTATTAGATTTTGACGGAGAAGATGGCGAGAAGGTTGattgttatatttgttataaatcttTTCCGACTGAGGATCATCTTATACGACATCAGAGAAATGCTCACAAGTCTGACCAAATTTCGTTAGGAGATGCTGCGGGTGGTGGAAATACTCTAAGTGTCAATGGCAATGGTAATAGAGCGCAGTatcatttgttttttgtttgtgAAGTATGTGGTAGTTCACATTCGAGCAAATGGGAACGTTGGTTGCATATCAACAACACACATAACAATGAACCTTCTATTAAATGTGAATTGGAAAATTGCGGAAAGATATTTGCGACGAAATCGTTACGTAATGAACATCTTCAGCATCATGCGATACAAGGACCTTCGCCAAACACCTGCGAGATATGTGGAAAGTTATGGCCTACTCGCGTTGATTATTGGAAACACGTGATGGGTGTACATGCAGACACAGTGCCTCTAATTTGTGGCGTTTGTTTGAAAGTATTCTCCGACGTTATGCAATTGAGTGCACACGTTAAAGCGAAACATTGGCCACTAACCAGTGGTGATTTCTGTTGTGATATTTGCGGTAGACCATATTCCAATAAATCGAAAATGTCTCGGCATAGAAAGATCCATGGCTTGGAAGCGGCTATGGACGCTGCATGCGATAATAGCAGTTTTAATGAAACGACCAATGAATCGGTGAAACCTGATCACAGTAATGGCGCTTCAGAAATAGAGTTAAATTGCGACCAGTGCCCTGAACTTAGTTTCACGACATTGGACAGTTTGTGTAATCATCGACGGATAACGCACAATCTTTTCCCGTGCGATTTATGTAGCAAATTTTATGGCAGAACGTCACATTTATGGAAACATGTAAATAGGGTGCACAAAGGACACACAGACGTGACCTGTCCTTACTGCGCAAAGACAAGCGCGTCAAGGGATCATCTGGCAGCACATATTGCAAAGATTCATAGGTTCATACCCACAGTGGGTAAGGACAATCAAAACTGCGTCACTTCCAAGTCCTTGAGTACAGACGATGGTGTCTTgcattattgcgaaaaatgtaacaaaggATTCCATAAACGCTACTTGCTCCGTCGTCATATGAAAGGCTGTCAAAATTATCGTAAAGATCCTGGAGCGTTGTTGACTCGTTGCCGGGCTTGCGAGAGGATATTTAAAGATCGCGCGAGTCTGCAGAAACATATTGAAAATCATCATACTACATATACTTGCCATTTGTGTAATGAGACGATCACTTCCAAGCTAGGTATCATGACACATAACCGTATCAATCATATGGATCATCCGGATCTGACGTGCGACCACCCGAGCTGTAAAAAACTTTTCCGCACTAAAGAAGATTTGGAATCTCATCGAAAAGATCACAAATATCATAGCAATCTGGACGTTTGTGATTTTTGCGGTGACACCGTGGAAAATAAACTGAAACTGAAGATGCATGTATTATCGTTGCATCGAAACGAGATCGGCGTATCCTGCGGGGTCTGTCTCATTCCAATGAAGGATCCCAAAGATTTGAAGAAACATGTCGAAGCGGTGCATAGCAGCGTTCTGTCTAAACCAAACACGTGTCAGGTATGTGGCAAGCAATATGCATCCAAATGGAAGGCTTTTGATCATACGAAGAAGTGTCATGGTAAAGTTTTCCTCACATGCAAACAGTGTTTAGCCGTTTTTACAGACGAGAACGATATACGCGATCACTATGAACATGTGCATAACGTTCCAAAGGACCAATTAGCTATTTTCGAATATAGAATGGATATTGGTGCAAAGAGGGAGGGTTACGAGACTCCTGATATCATTGTGAAGGAGGAACCGGATGATTTGGAGTTTGACGAAGAAATGTGTGACGAAAGTTCAAATGATTCTCGCAAACGTAAAAGATCGCCAAACGATACGTATGATTGCGAGATGTGTCCCGAGATCTTCCTCAATTCAGACACTCTCGCTAAGCATTATCAGAACGTCCATAATACAGACCCCGTCCGTATGTTCAAGAAATTCAGAAAGGATAATAGCGATGGCAAGCGCAAGATGAGAAATAGAAACAACTTTGAATGCAAGAATTGCAAAAAGCAATTCTCTACTAAGACTCTGTTCTGGAATCACATCAATGTATGTACACGACGAAACTCGATAGGTAGATTTGACGTGCCGAATAATGTTCCGACATCAATTCTGGAGTCTCATCTGAAAAACAATAATCAGATTCAACGAGAAGAACCGGTACCGCTTACGAACGAGTCCAACTTGAACATTCCCGACTTCAATCTATTCGAAGACATCAATTTGCAATTGTCAGCTCAGAAACCTGTGCCGAATCTTATGCCATTGTCACAGATCAAAGCGACGGGTAACGGCAAATGCTCGAGAAAAGACTCACGCAAGGTGTATGATGAATCGACCAATACCGAGTGTACGTGCGAAGTTTGTGGTAAACAATGGCCCGCCAAGAAACATTTGTGGCAACATCTAATTCGTTTCCATCGCGCTGAAGCTGCTGTTACATGTGGCGTATGTTTGAAGCTGTGTAAATCTTACCAAGACTTGGCCGACCACCTGAAGGCTGAGCATGCTCCCGTTTTGTCGCCGGAGGGCAATAATTTCACATGTAAGACGTGCGGTAGATATCATAACGCGAGAAGCAAATTGCTGTTGCATATGAGCATCCATATCGGAAACTTCCGGTGTCAAAAGTGCCAGCAAGGTTTTGCAAGTGAGGAGAAACTCACCGAGCATGCAACGAGTTGCAGTGGCAAATCGGAGTTTGAGGATAATACAGTGGCAGATGAAGATAATGCAAAGAATGACAACGACGAAAAGGGCAGTTTAATCGCCGACGAGACATCAGTCATTGAGGAAGCAGAGGAAGCGGAGGAAGCAGATTTTGAATCAGAAGGTGAAGGAAGTAGGGATATTCATGATGGAGATAATTCGGAAAATAGCGAAGAAGACAATTCGGAAAATAGTGACGATTCAGACAGCGATAGTAATAGTAGTTCAAGCGAAGACGAAAACGAAAATGAAGAaggagaggaagaggaggaggaagaggaagagaatgAAAACGAAAATGAATCTGATACGAGAACTACTAGTAGAGCGAGCGGTGATAGTGTATCGTGTAATTCCGATAGTGATGAATCAGATATGGATGAAACGGAAGTGGACGCAACGGAAAAGAAAGGTGTACAATTGAACGATATTAATAGATTCAGGATATGTGGTGAAGGTATTCAAGAGAATATGCCAGTGGAGACAAACATCGAGGATCAGAAAACTGATCTTACATCCATAATGGATGCTGTAGAACAGACtacatcaaataatttaaatgatctTTTGATTTCTAATGTACCTGGAAACATGGGCACCGAATTTGAGGCATTTCGAGTCGAAAAATTACAACAAGCTAAAGCTATAACGAGTGATGTAGACTCTGATAACGAAGACGATGATGATAATGAGGAAGATGATgaggaaaataatgaaaatgaagaagaggaagaagatgGTGAAGAAGGTGATCAGGATGAAGGTGAAGATGAAGATGAAGGTGAGGCTGAGAGTGAGaatgagaatgagaatgagaatgagaatgagaatgagaatgagaatgagaatgagaatgagaatgagaatgagaatgagggTGAAGCTGCAGctgaggaagaggaagaagaagaggaagaagaggaggatgATGAAGATGACGACGGACCGCCTGTGTTAAGTCCAATAATGCCTTTGTTACCAGAAAACGAATCTGAGGAGTACAGCGGTACGACAGATCGCACGAGGCATAAGCTTAGTCCAATGATTTCGTTGAGTATAGCTAAAGATCTAGAGGAGTGCGAAATAACCGAAATACCTAATGACACGGACAATGTGTCAAACACAGTCAACTTCTTCGCggctaataataatgatttgccCGTAACGTGGGACGAGAATTTGGATGGTAACGTAATTAACAATGGCGATTGCAACTCCGACGCTGGaaacagagagaaaaatgAGGAACTCGATAAGGAGTACGTAAAAATAGAAGTAAACGAAGGCGACTTTGAGGAAGATTCCGTGGATGAGAACGTAGTAGATAACAGAGAAGATGATGGAGATCAAGTGCATGAGGTGCATAATCTGGACGGAACTGTGTTAATGGTGACTAATGACGCGGAAggtaatcaaattttgatagaaCAAAACGTGTTAGATATCGATAACGAGGATTCTAATATCGAAGCGGCGCAGTATATTTATCCAGAGAACACTTACGAGATCGAGGAAGAGGATTATCCAACGCGAAATGAAACCGATGTTATGCAAACGGACGAGATACAAGGTAGTATGTCTTATGTTCAAGATACATCGGAAAACGAAGATAGTATGCAGAATGATATCGAGGAGAACAGTGATGTGCAAAAACAGTAG
Protein Sequence
MATISTITTTSMSTSTTRIETAMATEPRRNYNELCRLCASYDAVRMHIFGQEGKNRQLVDKIETCLPFKIMEDDYLPKVLCYRCMYNLENFYDFRTACVNAAVLLERNRPKEGVSDEGANDTAQSCEMRAAFLKKENMPVLIPEAPIVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEECSTNNTNAATAQDTTVFPHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPLTRTETRYQCQICPMVFTDLADFNAHRQICIHEQRTDLLGQTEAQNNKIFADTSDVSSIDLDDENKDFKNAEAKLAKNPQLTILKQALTKGDNLKRNFDDDGSTSNSKPKKIVKSEEGEANPQKRWYCEACPQSFTSVESLKEHEIRHDAEKPYICILCNKDFVLKSSLIRHITMLHGVDPTPIIDSDKCLKATVMSQNWNDRVDVSVYEQSEIKDPPELSSSPEINLENDDKDYKNNHENVEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFNNIQLQNHVFMYHGKSKLLISEQRRYSCTICGRQHDSRKKLITHVSIHNVDPAYDPGSFVQLNSNYYNENLNGGNEGNEQVLDFDGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQISLGDAAGGGNTLSVNGNGNRAQYHLFFVCEVCGSSHSSKWERWLHINNTHNNEPSIKCELENCGKIFATKSLRNEHLQHHAIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEAAMDAACDNSSFNETTNESVKPDHSNGASEIELNCDQCPELSFTTLDSLCNHRRITHNLFPCDLCSKFYGRTSHLWKHVNRVHKGHTDVTCPYCAKTSASRDHLAAHIAKIHRFIPTVGKDNQNCVTSKSLSTDDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTTYTCHLCNETITSKLGIMTHNRINHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNLDVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAVHSSVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHVHNVPKDQLAIFEYRMDIGAKREGYETPDIIVKEEPDDLEFDEEMCDESSNDSRKRKRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFRKDNSDGKRKMRNRNNFECKNCKKQFSTKTLFWNHINVCTRRNSIGRFDVPNNVPTSILESHLKNNNQIQREEPVPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQIKATGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASEEKLTEHATSCSGKSEFEDNTVADEDNAKNDNDEKGSLIADETSVIEEAEEAEEADFESEGEGSRDIHDGDNSENSEEDNSENSDDSDSDSNSSSSEDENENEEGEEEEEEEEENENENESDTRTTSRASGDSVSCNSDSDESDMDETEVDATEKKGVQLNDINRFRICGEGIQENMPVETNIEDQKTDLTSIMDAVEQTTSNNLNDLLISNVPGNMGTEFEAFRVEKLQQAKAITSDVDSDNEDDDDNEEDDEENNENEEEEEDGEEGDQDEGEDEDEGEAESENENENENENENENENENENENENENEGEAAAEEEEEEEEEEEDDEDDDGPPVLSPIMPLLPENESEEYSGTTDRTRHKLSPMISLSIAKDLEECEITEIPNDTDNVSNTVNFFAANNNDLPVTWDENLDGNVINNGDCNSDAGNREKNEELDKEYVKIEVNEGDFEEDSVDENVVDNREDDGDQVHEVHNLDGTVLMVTNDAEGNQILIEQNVLDIDNEDSNIEAAQYIYPENTYEIEEEDYPTRNETDVMQTDEIQGSMSYVQDTSENEDSMQNDIEENSDVQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01355612;
90% Identity
iTF_00015543;
80% Identity
-