Basic Information

Gene Symbol
-
Assembly
GCA_017607565.1
Location
JAANIB010011052.1:288315-299115[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 5.7e-06 0.00028 20.2 1.0 1 23 261 283 261 283 0.98
2 32 0.0083 0.41 10.3 3.7 1 23 306 329 306 329 0.96
3 32 0.00056 0.028 14.0 0.5 2 23 336 358 335 358 0.96
4 32 0.00058 0.029 13.9 0.1 1 21 378 398 378 399 0.95
5 32 0.011 0.57 9.8 0.1 2 23 497 518 496 518 0.95
6 32 0.0057 0.28 10.8 0.2 1 23 524 547 524 547 0.91
7 32 0.00017 0.0085 15.6 0.2 1 23 618 641 618 641 0.96
8 32 0.062 3.1 7.5 3.1 1 23 647 670 647 670 0.95
9 32 0.11 5.5 6.7 1.5 1 23 683 705 683 705 0.97
10 32 3.2e-05 0.0016 17.9 0.9 3 23 750 771 749 771 0.96
11 32 2.7 1.3e+02 2.4 0.4 1 23 803 826 803 826 0.92
12 32 0.0048 0.24 11.0 1.0 2 23 833 856 832 856 0.94
13 32 0.82 41 4.0 0.0 2 23 865 887 865 887 0.90
14 32 0.024 1.2 8.8 0.0 2 23 894 916 893 916 0.93
15 32 8.2e-05 0.0041 16.6 3.2 1 23 924 946 924 946 0.97
16 32 0.032 1.6 8.5 1.3 3 23 984 1006 982 1006 0.93
17 32 0.00019 0.0095 15.4 3.3 1 23 1009 1032 1009 1032 0.97
18 32 0.00063 0.031 13.8 0.1 2 23 1039 1061 1038 1061 0.96
19 32 0.00084 0.041 13.4 3.9 1 21 1088 1108 1088 1109 0.95
20 32 0.0025 0.12 11.9 1.8 2 23 1123 1144 1122 1145 0.93
21 32 0.34 17 5.2 1.1 1 23 1148 1171 1148 1171 0.94
22 32 0.024 1.2 8.8 2.1 2 23 1178 1201 1177 1201 0.90
23 32 2.2 1.1e+02 2.7 0.1 2 23 1209 1231 1208 1231 0.94
24 32 3 1.5e+02 2.2 0.0 2 23 1238 1260 1237 1260 0.88
25 32 0.21 10 5.9 2.7 2 23 1269 1291 1269 1291 0.96
26 32 0.63 31 4.4 0.5 2 23 1297 1319 1296 1319 0.91
27 32 0.015 0.76 9.4 0.1 1 23 1381 1404 1381 1404 0.95
28 32 0.00016 0.0079 15.7 1.1 1 21 1432 1452 1432 1453 0.95
29 32 0.29 15 5.4 1.9 2 23 1554 1576 1553 1576 0.94
30 32 0.84 42 4.0 0.4 2 23 1583 1605 1582 1605 0.94
31 32 0.64 31 4.3 2.5 1 23 1616 1638 1616 1638 0.97
32 32 0.019 0.93 9.2 0.2 1 19 1642 1660 1642 1663 0.94

Sequence Information

Coding Sequence
CTCAAGAGACTTGGCGACATAACGATGGCGACGATATCGACGATCACGACGACAACGTCGATGTCGATGTCAACGACGAGGATTGAGACAGCGATGGCGACAGAGCCGAGAAGGAACTATAACGAACTATGTCGCTTATGCGCTTCTTACGACGCCGTTAGGATGCACATATTTGGCCAGGAAGGCAAGAATCGTCAACTCGTCGACAAGATTGAAACGTGCTTGCCGTTCAAGATAATGGAAGATGATTATTTGCCAAAAGTCCTGTGTTATCGATGTATGTACAACTTGGAGAATTTCTATGACTTTAGGACTGCGTGTGTTAACGCAGCTGTTTTGTTGGAAAGAAATAGGCCGAAGGAAGGCGTGAGCGATGAAGGTGCAAATGACACTGCGCAATCCTGCGAGATGCGCGCGGCGTttcttaagaaagaaaatatgccAGTACTTATCCCAGAAGCACCCGTAGTCAATCCCAATGCAGCATTGGGTACGCCACCGAGATTAAATTCGGATGGTGAAGCAGATCCCGAGATCGAAGAGATTCTTGACACAAGTGAAGGTACGGATGAAGcCACAGTGATCGATGATTCGGAAGATCGGCGATCGGAATATGAGATGGCATACGAAATGGACATGGAGACGAATCCTAGCGACTTCTTGGAAATGACCCCGATGGTAACCGAAGAAAATGAAGAGGAATGTAGTACAAACAACACGAATGCTGCGACTGCTCAAGATACCACGGTTTTCCCACATACGTCACAACAACATGAGGTCTACGTCTGTTCTCTATGCAACAAAGCGTTCAGTTCCAAGGGTCACTTGTCCCTGCACGCGAGGATTCACGTGGGTGAGGGTGATGTGATTGGCGAAAGAGTAATTACCGACGACCATACTTCGTACCAACGACCGTATCAATGTGATCTTTGTCATAAATCGTATTCTACTGCGAAGCATCGCTGGGGACACGTTTCTACAACGCATCGGGGACATCCTGCAGTAACGTGTGCGTACTGTTCTCGTATATACTCGACGCGATATAATCTCGATGAACATATAAAATCACGACATGCTGGGCTACCACCACCTCCAGAATTATCGGTTCCTCTAACGCGTACGGAAACACGTTACCAGTGCCAAACATGTCCGATGGTGTTTACGGATCTAGCAGATTTCAATGCGCATCGTCAGATATGCATTCAGGAACAACGTACAGATTTATTAGGTCAAACCGAAGcgcagaataataaaattttcgccGATACATCCGACGTCTCGAGTATAGATTTGGATGATGAGAATAAAGACTTTAAGAATGCCGAGGCTAAATTGGCGAAAAATCCACAGTTAACCATATTGAAACAGGCGCTGACTAAAGGAGATAATTTAAAACGGAATTTCGATGATGATGGTTCGACGTCTAGCGGCAAGccgaaaaaaatagttaagtcagAAGAAGGCGAGGCAAATCCTCAGAAGAGATGGTATTGTGAAGCTTGTCCACAAAGTTTTACATCAGTGGAGAGTTTAAAAGAACACGAGATTAGACACGATGCCGAAAAGCCATATATTTGCATACTATGCAACAaagattttgttttgaaatcttCATTAATTAGGCATATTACAGTGTTACATGGTGTTGATCCTACTCCTATCATCGACAGTGATAAGTGTCTAAAGGCAACAGTAATGTCTCAGAATTGGAACGATCGAGTGGACGTCAGCGTTTATGAGCAAAGTGAAATAAAAGACCCACCAGAGCTCTCGTCGTCACCTGagataaatttagagAATGATGACAAGGATTATAAAAACAACCATGAGAATGTAGAAATTGAAACAGTATTTGTGTGTGAGACTTGTAAGCGAGATTTTAACGATCGAGCATCATTATGGCTGCACATACGAGCAATGCACAAGGAATATGCAGCATTTACCTGTGGAGTGTGTTTAAAGATGTGCTTTAATAATACACAACTTCAAAATCATGTCTTCATGTATCATGGAAGGTCTAAGCTTTTAATCTCGGAACAAAGAAGGTATAGTTGCACGATATGCGGTAGACAGCATGACTCGAGAAAAAAGCTAATCACTCATGTCTCGATACATAATGTCGATCCTGCCTATGATCCTGGAAGTTTTGTACAATTGAACAGTAATTATTACAACGAAAACTTGAATGGTAACGAAGGCAATGAACAAGTATTAGATTTTGACGGAGAAGATGGCGAGAAAGTTGATTGttacatttgttataaatcTTTTCCGACTGAGGATCATCTTATACGACATCAGAGAAATGCTCATAAGTCTGACCAGATTTCGTTAGGAGATGCTGCGGGTGGTGGAAATACTCTAAGTGTCAATGGCAATGGTAATAGAGCGCAGTatcatttgttttttgtttgcgAAGTATGTGGTAGTTCACATTCGAGCAAATGGGAACGTTGGTTGCATATCAATAACACACATAACAATGAACCTTCTATTAAATGTGAATTGGAAAATTGCGGAAAAATATTTGCGACGAAATCGTTACGTAATGAACATCTTCAGCATCATGCGATACAAGGACCTTCGCCAAACACCTGCGAGATATGTGGAAAATTATGGCCTACTCGCGTTGATTATTGGAAACATGTGATGGGCGTACACGCAGATACAGTGCCTCTAATTTGTGGCGTTTGTTTGAAAGTATTCTCCGACGTTATGCAATTGAGCGCACACGTTAAGGCGAAACATTGGCCACTAACCAGTGGTGATTTTTGTTGTGATATTTGCGGTAGACCATATTCCAATAAATCGAAAATGTCTCGGCATAGAAAGATCCATGGCTTGGAAGCGGCTATGGACGCTGCATGCGATAATAGCAGTTTTAATGAAACGACCAATGAATCGGTGAAACCTGATCACAGTAATGGCGCTTcagaaatagaattaaattgcGAGCAGTGCCCTGAACTTAGTTTCACGACATTAGACAGTTTGTGTAATCATCGACGGATAACGCACAATCTTTTCCCGTGCGATTTGTGTAACAAATGTTATGGCAGAACGTCACATTTATGGAAACATGTAAATAGGGTGCACAAAGGACACACAGACGTGACCTGTCCTTATTGTGCAAAGACAAGCGCGTCAAGGGATCATCTGGCAGCACATATTGCAAAGATTCATAGGTTCATATCCACAGTGAGTAAGGACAATCAAAACTGCGTCACTTCCAAGTCCTTGAGTGCAGACGATGGTGTCTTgcattattgtgaaaaatgtaacaaaggATTCCATAAACGCTATTTGCTCCGTCGTCATATGAAAGGTTGTCAAAACTATCGTAAAGATCCTGGGGCATTGTTGACTCGTTGCCGAGCCTGCGAGAGGATATTTAAAGATCGTGCGAGTCTGCAGAAACATATTGAAAATCATCATACTACATATACTTGCCATTTGTGTAATGAGACGATCACTTCCAAGCTAGGTATCATGACACACAATCGTATCAATCATATGGATCATCCGGATCTGACGTGCGACCATCCGAGCTGTAAAAAACTTTTCCGCACTAAAGAAGATTTGGAATCTCATCGAAAAGATCACAAATATCATAGCAATCTGGACGTTTGTGATTTTTGCGGTGACACcgtggaaaataaattgaaactgAAGATGCATGTATTATCGTTGCATCGAAACGAGATCGGTGTATCCTGTGGGGTCTGTCTCATTCCAATGAAGGATCCCaaagatttgaaaaaacaTGTCGAAGCGGTGCATAGCAGCGTTCTCTCTAAACCAAACACGTGTCAGGTATGTGGCAAGCAATATGCATCCAAATGGAAGGCTTTCGATCACACGAAGAAGTGTCATGGCAAAGTTTTTCTCACATGCAAACAGTGTTTAGCCGTTTTTACAGACGAGAATGATATACGCGATCACTATGAACATGTGCATAACGTTCCAAAGGACCAATTAGCTATTTTCGAATATAGAATGGATATTGGTGCAAAGAGGGAGGGTTACGAGACTCCTGATATCATTGTGAAGGAGGAACCTGATGATTTAGAGTTTGACGAAGAAATGTGTGACGAAAGTTCGAATGATTCTCGCAAACGTAGAAGATCGCCAAACGATACGTATGATTGCGAGATGTGTCCCGAGATCTTCCTCAATTCAGACACTCTCGCTAAGCATTATCAGAACGTCCATAATACAGACCCCGTCCGTATGTTCAAGAAATTCAGAAAGGATAATAGCGATGGCAAGCGCAAGATGAGAAATAGAAACAACTTTGAATGCAAGAATTGCAAAAAGCAATTCTCTACTAAGACTCTGTTCTGGAATCACATCAATATATGTACACGACGAAACTCGATAGGTAGATTTGACATGCCGAATAATGTTCCGACATCAATTCTGGAGTCTCATCTGAAAAACAATAATCAGATTCAACGAGAAGAACCGGTACCGCTTACGAACGAGTCCAACTTGAACATTCCCGACTTCAATCTATTCGAAGACATCAATTTGCAATTGTCAGCTCAGAAACCTGTGCCGAATCTTATGCCATTGTCGCAGATGAAAGTGACGGGTAACGGCAAATGCTCGAGAAAAGACTCACGCAAGGTGTATGATGAATCAACCAATACCGAGTGCACGTGCGAAGTTTGTGGTAAACAATGGCCCGCCAAGAAACATTTGTGGCAACATCTAATTCGTTTCCACCGCGCTGAAGCTGCTGTTACGTGTGGTGTATGTTTGAAACTGTGTAAATCTTACCAAGACTTGGCCGATCACCTGAAGGCTGAGCATGCTCCTGTTTTGTCACCGGAGGGCAATAATTTCACATGTAAGACATGCGGTAGATATCACAACGCGAGAAGCAAATTGCTGTTGCACATGAGCATCCATATCGGAAACTTCCGGTGTCAAAAGTGCCAGCAAGGTTTTGCAAGTGAGGAGAAACTCACCGAGCATGCAACGAGCTGCAATGGCAAATCGGAGTTTGAGGATAATACAGTGGCAGATGAAGATAATGCAAAGAATGACAACGACGAGAAGGGCAGTTTAATCGCCGACGAGACATCAGTCATTGAGGAAGCAGAGGAAGCGGAGGAAGCAGATTTTGAATCAGAAGGTGAAGGAAGTAGGGATATTCACGATAGAGATAATTCGGAAAATAGTGAAGAAGACAATTCGGAAAATAGTGATGATTCAGATAGCGATAGTAATAGTAGTTCGAGCGAAGACGAAAACGAAAATGAaggagaggaagaggaggaggaagaggaagagaatgAAAACGAAAATGAATCTGATACGAGAACTACTAGTAGAGCGAGCGGTGATAGTGTATCATGTAATTCCGATAGTGACGATGAATCAGATATGGATGAAACGCAAGTGGACGCAACGGAAAAGAAAGCTGTACAATTGAACGATATTAATAGATTCAGGATATGTAGTGACGGTATTCAAGAGAATGTGCCAGTGGAGACAAATATCGAAGATCAGAAAACTGATCTTACATCCATAGCAACAGTTGCAGAACAGACTAcatcgaataatttaaatgatctTTTGATTTCTAATGTACCTGGAAACATGGGCACCGACAAATTTGAGGTATTTCGTGTCGAAAAACTACAACAAGCTACGAGCGATGTAGACTCTGATAACGAAGACGATGATGATAACGAGGAAGATGATgaggaaaataatgaaaatgaagaagaggaagaagatgaggaagaagaagaggaagaagaggaggatGATGAAGATGACGATGATGGACCGCCTGTGTTAAGTCCAATAATGCCTTTGTTACCAGAAAACGAATCTGAGGAGTACAGCGGTACGACAGATCGCACGAGGCACAAGCTTAGTCCAATGGTTTCGTTGAGTATAGCTAAAGATCTAGAGGAGTGCGAAATAACCGAAATACCAAATGACACGGACAATGTGTCAAACACAGTCAATTTCTTCGCggctaataataatgatttgcCCGTAACATGGGACGAGAATTTGGATGGTAACGTAATCAACAATGACGATTGCAACTCCGACGCTGGAAACAGGGAGAAAAATGAGGAACTTGATAAGGAATACGTAAAAATAGAAGTAAACGAAGGCGACTTTGAGGAAGATTCCATGGATGAGAACGTAGTGGATAACAGAGAAGATGATGGAGACAATCAAGTGCATGAGGTGCATAATCTGGACGGAACTGTGTTAATGGTGACTAATGACGCGGAAggtaatcaaattttgatagaaCAAAATGTGTTAGATATCGATAACGAGGACTCTAATATCGAAGCAGCCCAGTATATTTATCCAGAGAACACTTACGAGATCGAGGAAGAAGATTATCCAACGCGAAACGAAACCGATGTCATGCAGACGGACGAGATGCAAGGTAGTATGTCCTACGTTCAGGATACTTCGGAAAACGAAGATAGTATGCAGAATGATATCGAGGGAAACAGTGATGTGCAAAAACAG
Protein Sequence
LKRLGDITMATISTITTTTSMSMSTTRIETAMATEPRRNYNELCRLCASYDAVRMHIFGQEGKNRQLVDKIETCLPFKIMEDDYLPKVLCYRCMYNLENFYDFRTACVNAAVLLERNRPKEGVSDEGANDTAQSCEMRAAFLKKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEECSTNNTNAATAQDTTVFPHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPLTRTETRYQCQTCPMVFTDLADFNAHRQICIQEQRTDLLGQTEAQNNKIFADTSDVSSIDLDDENKDFKNAEAKLAKNPQLTILKQALTKGDNLKRNFDDDGSTSSGKPKKIVKSEEGEANPQKRWYCEACPQSFTSVESLKEHEIRHDAEKPYICILCNKDFVLKSSLIRHITVLHGVDPTPIIDSDKCLKATVMSQNWNDRVDVSVYEQSEIKDPPELSSSPEINLENDDKDYKNNHENVEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFNNTQLQNHVFMYHGRSKLLISEQRRYSCTICGRQHDSRKKLITHVSIHNVDPAYDPGSFVQLNSNYYNENLNGNEGNEQVLDFDGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQISLGDAAGGGNTLSVNGNGNRAQYHLFFVCEVCGSSHSSKWERWLHINNTHNNEPSIKCELENCGKIFATKSLRNEHLQHHAIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEAAMDAACDNSSFNETTNESVKPDHSNGASEIELNCEQCPELSFTTLDSLCNHRRITHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHTDVTCPYCAKTSASRDHLAAHIAKIHRFISTVSKDNQNCVTSKSLSADDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTTYTCHLCNETITSKLGIMTHNRINHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNLDVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAVHSSVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHVHNVPKDQLAIFEYRMDIGAKREGYETPDIIVKEEPDDLEFDEEMCDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFRKDNSDGKRKMRNRNNFECKNCKKQFSTKTLFWNHINICTRRNSIGRFDMPNNVPTSILESHLKNNNQIQREEPVPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQMKVTGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASEEKLTEHATSCNGKSEFEDNTVADEDNAKNDNDEKGSLIADETSVIEEAEEAEEADFESEGEGSRDIHDRDNSENSEEDNSENSDDSDSDSNSSSSEDENENEGEEEEEEEEENENENESDTRTTSRASGDSVSCNSDSDDESDMDETQVDATEKKAVQLNDINRFRICSDGIQENVPVETNIEDQKTDLTSIATVAEQTTSNNLNDLLISNVPGNMGTDKFEVFRVEKLQQATSDVDSDNEDDDDNEEDDEENNENEEEEEDEEEEEEEEEDDEDDDDGPPVLSPIMPLLPENESEEYSGTTDRTRHKLSPMVSLSIAKDLEECEITEIPNDTDNVSNTVNFFAANNNDLPVTWDENLDGNVINNDDCNSDAGNREKNEELDKEYVKIEVNEGDFEEDSMDENVVDNREDDGDNQVHEVHNLDGTVLMVTNDAEGNQILIEQNVLDIDNEDSNIEAAQYIYPENTYEIEEEDYPTRNETDVMQTDEMQGSMSYVQDTSENEDSMQNDIEGNSDVQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01476424;
90% Identity
iTF_00015543;
80% Identity
-