Basic Information

Gene Symbol
-
Assembly
GCA_017607455.1
Location
JAANHZ010000349.1:1010439-1021270[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 5.4e-06 0.00027 20.3 1.0 1 23 252 274 252 274 0.98
2 32 0.0078 0.39 10.3 3.7 1 23 297 320 297 320 0.96
3 32 0.00052 0.027 14.0 0.5 2 23 327 349 326 349 0.96
4 32 0.00055 0.028 13.9 0.1 1 21 369 389 369 390 0.95
5 32 0.011 0.55 9.9 0.1 2 23 455 476 454 476 0.95
6 32 0.0028 0.14 11.7 0.4 1 23 482 505 482 505 0.91
7 32 0.00016 0.0081 15.6 0.2 1 23 575 598 575 598 0.96
8 32 0.058 2.9 7.6 3.1 1 23 604 627 604 627 0.95
9 32 0.1 5.2 6.8 1.5 1 23 640 662 640 662 0.97
10 32 3e-05 0.0015 17.9 0.9 3 23 707 728 706 728 0.96
11 32 2.5 1.3e+02 2.4 0.4 1 23 759 782 759 782 0.92
12 32 0.0045 0.23 11.1 1.0 2 23 789 812 788 812 0.94
13 32 0.77 39 4.0 0.0 2 23 821 843 821 843 0.90
14 32 0.022 1.1 8.9 0.0 2 23 850 872 849 872 0.93
15 32 7.7e-05 0.0039 16.6 3.2 1 23 880 902 880 902 0.97
16 32 0.03 1.5 8.5 1.3 3 23 940 962 938 962 0.93
17 32 0.00018 0.0091 15.5 3.3 1 23 965 988 965 988 0.97
18 32 0.00059 0.03 13.8 0.1 2 23 995 1017 994 1017 0.96
19 32 0.00079 0.04 13.4 3.9 1 21 1044 1064 1044 1065 0.95
20 32 0.0023 0.12 12.0 1.8 2 23 1079 1100 1078 1101 0.93
21 32 0.32 16 5.2 1.1 1 23 1104 1127 1104 1127 0.94
22 32 0.023 1.1 8.9 2.1 2 23 1134 1157 1133 1157 0.90
23 32 2.1 1e+02 2.7 0.1 2 23 1165 1187 1164 1187 0.94
24 32 2.8 1.4e+02 2.3 0.0 2 23 1194 1216 1193 1216 0.88
25 32 0.19 9.8 5.9 2.7 2 23 1225 1247 1225 1247 0.96
26 32 0.59 30 4.4 0.5 2 23 1253 1275 1252 1275 0.91
27 32 0.014 0.72 9.5 0.1 1 23 1337 1360 1337 1360 0.95
28 32 0.00015 0.0074 15.7 1.1 1 21 1388 1408 1388 1409 0.95
29 32 0.28 14 5.4 1.9 2 23 1510 1532 1509 1532 0.94
30 32 0.79 40 4.0 0.4 2 23 1539 1561 1538 1561 0.94
31 32 0.6 30 4.4 2.5 1 23 1572 1594 1572 1594 0.97
32 32 0.018 0.9 9.2 0.2 1 19 1598 1616 1598 1619 0.94

Sequence Information

Coding Sequence
ATGGCGACGATATCAACGATCACGACGACAACGTCGATGTCGACGTCAACGACGAGGATTGAGACAGCGATGGCGACAGAGCCGAGAAGGAACTATAACGAACTATGTCGCTTATGCGCTTCTTACGACGCCGTTAGGATGCACATATTTGGCCAGGAAGGCAAGAATCGTCAACTCGTCGACAAGATTGAAACGTGCTTGCCGTTCAAGATAATGGAAGATGATTATTTGCCAAAAGTCCTGTGTTATCGATGTATGTACAACTTGGAGAATTTCTATGACTTTAGGACTGCGTGTGTTAACGCAGCTGTTTTGTTGGAAAGAAATAGGCCGAAGGAAGGCGTGAGCGATGAAGGTGCAAATGACACTGCGCAATCCTGCGAGATGCGCGCGGCATttcttaagaaagaaaatatgccAGTACTTATCCCAGAAGCACCCGTAGTCAATCCCAATGCAGCATTGGGTACGCCACCGAGATTAAATTCGGATGGTGAAGCAGATCCCGAGATCGAAGAGATTCTTGACACAAGTGAAGGTACGGATGAAGcCACAGTGATCGACGATTCGGAAGATCGACGATCGGAATATGAGATGGCATACGAAATGGACATGGAGACGAATCCTAGCGACTTCTTGGAAATGACTCCGATGGTAACCGAAGAAAATGAAGAGGAATGTAGTACAAACAACACGAATGTCGCGACTGCTCAAGATACGGTTTTTCCACATACGTCACAACAACATGAGGTCTACGTCTGTTCTCTATGCAACAAAGCGTTCAGTTCCAAGGGTCACTTGTCCCTGCACGCGAGGATTCACGTGGGTGAGGGTGATGTGATTGGCGAAAGAGTAATTACCGACGACCATACTTCGTACCAACGACCGTATCAATGTGATCTTTGTCATAAATCGTATTCTACTGCGAAGCATCGCTGGGGACACGTTTCTACAACGCATCGAGGACATCCTGCAGTAACGTGTGCGTACTGTTCTCGTATATACTCGACGCGATATAATCTCGATGAACATATAAAATCACGACATGCTGGGCTACCACCACCTCCAGAATTATCGGTTCCTCTAACGCGTACGGAAACACGTTACCAGTGCCAAACATGTCCGATGGTGTTTACGGATCTAGCAGATTTCAATGCGCATCGTCAGATATGCATCCAGGAACAACGTACAGATTTATTAGGTCAAACCGAAGcgcagaataataaaattttcgccGATACATCCGACATCTCAAGAGATAATTTAAAACGGAATTTCGATGATGATGGTTCGACGTCTAGCGGCAAGccgaaaaaaatagttaagtcagAAGAAGGCGAGGCAAATCCTCAGAAGAGATGGTATTGTGAAGCTTGTCCACAAAGTTTTACATCAGTGGAGAGTTTAAAAGAACACGAGATTAGACACGATGCCGAAAAGCCATATATTTGCATACTATGCAACAaagattttgttttgaaatcttCATTAAATAGGCATATTACAATGTTACATGGTGTTGATCCTGCTCCTATCATCCACAGTGATAAGTGTCTAAAGGCAACAGTAATGTCTCAGAATTGGAACGATCGAGTGGACGTCAGCGTTTATGAGCAAAGTGAAATAAAAGACCCACCAGAGCTCTCGTCATCACCTGagataaatttagagAATGATGACAAGGATTATAAAAACCATGAGAATGTAGAAATTGAAACAGTATTTGTGTGTGAGACTTGTAAGCGAGATTTTAACGATCGAGCATCATTATGGCTGCACATACGAGCAATGCACAAGGAATATGCAGCATTTACCTGTGGAGTGTGTTTAAAGATGTGCTTTAATAATACACAACTTCAAAATCATGTCTTCATGTATCATGGAAGGTCTAAGCTTTTAATCTCGGAACAAAGAAGGTATAGTTGCACGATATGCGGTAGACAGCATGACTCGAGAAAAAAGCTAATCACTCATGTCTCGATACATAATGTCGATCCTGCCTATGATCCTGGAAGTTTTGTACAATTGAACAGTAATTATTACAACGAAAACTTGAATGGTAACGAAGGCAATGAACAAGTATTAGATTTTGACGGAGAAGATGGCGAGAAAGTTGATTGttacatttgttataaatcTTTTCCGACTGAGGATCATCTTATACGACATCAGAGAAATGCTCATAAGTCTGACCAGATTTCGTTAGGAGATGCTGCGAGTGGAAATACTCTAAGTGTCAATGGCAATGGTAATAGAGCGCAGTatcatttgttttttgtttgcgAGGTATGTGGTAGTTCACATTCGAGCAAATGGGAACGTTGGTTGCATATCAACAACACACATAATAATGAACCTTCTATTAAATGTGAATTGGAAAATTGCGGAAAAATATTTGCGACGAAATCGTTACGTAATGAACATCTTCAACATCATGCGATACAAGGACCCTCGCCAAACACCTGCGAGATATGTGGAAAATTATGGCCTACTCGCGTTGATTATTGGAAACACGTGATGGGCGTACACGCAGATACAGTGCCTCTAATTTGTGGCGTTTGTTTGAAAGTATTCTCCGACGTTATGCAATTGAGCGCACACGTTAAGGCGAAACATTGGCCACTAACCAGTGGTGATTTTTGTTGTGATATTTGCGGTAGACCATATTCCAATAAATCGAAAATGTCTCGGCATAGAAAGATCCATGGCTTGGAGGCGGCTATGGACGCTGCATGCGATAATAGCAGTTTTAATGAAACGACCAATGAATCGGTGAAACCTGATCACAGTAATGGCGCTTcagaaatagaattaaattgcGAGCAATGTCCTGAACTTAGTTTCACGACATTGGACAGTTTGTGTAATCATCGACGGATAACACATAATCTTTTCCCGTGCGATTTGTGTAACAAATGTTATGGCAGAACGTCACATTTATGGAAACATGTAAATAGGGTGCACAAAGGACACACAGACGTGACCTGTCCTTATTGCGCAAAGACAAGCGCATCAAGGGATCATCTAGCAGCACATATTGCAAAGATTCATAGGTTCATGCCCACAGTGGGTAAGGACAATCAAAACTGCGTCACTTCCAAGTCCTTGAGTGCAGACGATGGTGTCTTgcattattgtgaaaaatgtaacaaaggATTCCATAAACGCTACTTGCTCCGTCGTCATATGAAAGGTTGTCAAAACTATCGTAAAGATCCTGGGGCATTGTTGACTCGTTGCCGGGCCTGCGAGAGGATATTTAAAGATCGCGCGAGTCTGCAGAAACATATTGAAAATCATCATACTACATATACTTGCCATTTGTGTAATGAGACGATCACTTCCAAGCTAGGTATCATGACACACAATCGTATCAATCATATGGATCATCCGGATCTGACGTGCGACCATCCGAGCTGTAAAAAACTTTTCCGCACCAAAGAAGATTTGGAATCTCATCGAAAAGATCACAAATATCATAGCAATCTGGATGTTTGTGATTTTTGCGGTGACACCGTGGAAAATAAACTGAAACTGAAGATGCATGTATTATCATTGCATCGAAACGAGATCGGCGTATCCTGTGGGGTCTGTCTCATTCCAATGAAGGATCCCAAAGATTTGAAGAAACATGTCGAAGCGGTGCATAGCAGCGTTCTCTCTAAACCAAACACGTGTCAGGTATGTGGCAAGCAATATGCATCCAAATGGAAGGCTTTCGATCACACGAAGAAGTGTCATGGCAAAGTTTTTCTTACATGCAAACAGTGTTTAGCCGTTTTTACAGACGAGAATGATATACGCGATCACTATGAACATGTGCATAACGTTCCAAAGGACCAATTAGCTATTTTCGAATATAGAATGGATATTGGTGCAAAGAGGGAGGGTTACGAGACTCCTGATATCATTGTGAAGGAGGAACCTGATGATTTAGAGTTTGACGAAGAAATGTGTGACGAAAGTTCGAATGATTCTCGCAAACGTAGAAGATCGCCAAATGATACGTATGATTGCGAGATGTGTCCCGAGATCTTCCTCAATTCAGACACTCTCGCTAAGCATTATCAGAACGTCCATAATACAGACCCCGTCCGTATGTTCAAGAAATTCAGGAAGGATAATAGCGATGGCAAGCGCAAGATGAGAAATAGAAACAATTTTGAATGCAAGAATTGCAAAAAGCAATTCTCTACTAAGACTCTGTTCTGGAATCACATCAATGTATGTACACGACGAAACTCGATAGGTAGATTTGATATGCCGAATAATGTTCCGACATCAATTCTGGAGTCTCatctaaaaaacaataatcaGATTCAACGAGAAGAACCGGTACCGCTTACAAACGAGTCCAACTTGAACATTCCCGACTTCAATCTATTCGAAGACATCAATTTGCAATTGTCAGCTCAGAAACCTGTGCCGAATCTTATGCCATTGTCGCAGATGAAAGCAACGGGTAACGGCAAATGCTCGAGAAAAGACTCACGCAAGGTGTATGATGAATCAACCAATACCGAGTGTACGTGCGAAGTTTGCGGTAAACAATGGCCCGCCAAGAAACATTTGTGGCAACATCTAATTCGTTTCCATCGCGCTGAAGCTGCTGTTACATGTGGTGTATGTTTGAAATTGTGTAAATCTTATCAAGACTTGGCCGATCACCTGAAGGCTGAACATGCTCCCGTTTTGTCACCGGAGGGCAATAATTTCACATGTAAGACGTGCGGTAGATATCACAACGCGAGAAGCAAATTGCTGTTGCACATGAGCATCCATATCGGAAACTTCCGGTGTCAAAAGTGCCAGCAAGGTTTTGCAAGTGAGGAGAAACTCACCGAGCATGCAACGAGCTGCAATGGCAAATCGGAGTTTGAGGATAATACAGTGGCAGATGAAGATAATGCAAAGAATGACAACGACGAGAAGGGCAGTTTAATCGCCGATGAGACATCAGTCATTGAGGAAGCAGAGGAAGCGGAGGAAGCAGATTTTGAATCAGAAGGTGAAGGAAGTAGGGATATTCATGATAGAGATAATTCGGAAAATAGCGAAGAAGACAATTCGGAAAATAGTGATGATTCAGATAGCGATAGTAATAGTAGTTCGAGCGAAGACGAAAACGAAAATGAaggagaggaagaggaagaggaagaaaatgaaaacgaAAATGAATCTGATACGAGAACTACTAGTAGAGCGAGCGGTGATAGTGTATCATGTAATTCCGACAGTGACGATGAATCAGATATGGATGAAACGCAAGTGGACGCAACGGAAAAGAAAGCTATACAATTGAACGATATTAATAGATTCAGGATATGTGGTGACGGTATTCAAGAGAATATGCCAGTGGAGACAAATATTGAAGATCAGAAAACTGATCTTACATCCATAGCAACAGTTGCAGAACAGACTACatcgaataatttaaatgatctTTTGATTTCTAATGTACCTGGAAACATGGGCACTGACAAATTTGAAGCATTTCGTGTCGAAAAACTACAACAAGCTACGACGAGCGATGTAGACTCTGATAACGAAGACGATGATGATAACGAGGAAGATGATgaggaaaataatgaaaatgaagaagaagaagaagatgaggaagaagaagaggaagaagaggaggatGATGAAGATGACGATGATGGACCGCCTGTGTTAAGTCCAATAATGCCTTTGTTACCAGAAAATGAATCTGAGGAGTACAGCGGTACGACAGATCGCACGAGGCACAAGCTTAGTCCAATGGTTTCGTTGAGTATAGCTAAAGATCTAGAGGAGTGCGAAATAACCGAAATACCAAATGACACGGACAATATGTCAAACACAGTCAATTTCTTCGCggctaataataatgatttaccCGTAACATGGGACGAGAATTTGGATGGTAACGTAATCAACAATGACGATTGCAACTCTGACGCTGGAAACATGGAGAAAAATGAGGAATTTGATAAGGAATACGTAAAAATAGAAGTAAACGAAGGTGACTTTGAGGAAGATTCCGTGGATGAGAACGTAGTGGATAATAGAGAAGATGATGGAGATAATCAAGTGCATGAGGTGCATAATCTGGACGGAACAGTGTTAATGGTGACTAATGACGCGGAAggtaatcaaattttgatagaaCAAAACGTGTTAGATATTGATAACGAGGACTCTAATATCGAAGCGGCCCAGTATATTTATCCAGAGAACACTTACGAGATCGAGGAAGAGGATTATCCAACGCGAAACGAAACCGACGTCATGCAGACGGACGAGATGCAAGGTAGTATGTCCTACGTTCAGGATACTTCGGAAAACGAAGATAGTATGCAGAATGATATCGAGGAAAACAGTGATGTGCAAAAACAG
Protein Sequence
MATISTITTTTSMSTSTTRIETAMATEPRRNYNELCRLCASYDAVRMHIFGQEGKNRQLVDKIETCLPFKIMEDDYLPKVLCYRCMYNLENFYDFRTACVNAAVLLERNRPKEGVSDEGANDTAQSCEMRAAFLKKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEECSTNNTNVATAQDTVFPHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPLTRTETRYQCQTCPMVFTDLADFNAHRQICIQEQRTDLLGQTEAQNNKIFADTSDISRDNLKRNFDDDGSTSSGKPKKIVKSEEGEANPQKRWYCEACPQSFTSVESLKEHEIRHDAEKPYICILCNKDFVLKSSLNRHITMLHGVDPAPIIHSDKCLKATVMSQNWNDRVDVSVYEQSEIKDPPELSSSPEINLENDDKDYKNHENVEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFNNTQLQNHVFMYHGRSKLLISEQRRYSCTICGRQHDSRKKLITHVSIHNVDPAYDPGSFVQLNSNYYNENLNGNEGNEQVLDFDGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQISLGDAASGNTLSVNGNGNRAQYHLFFVCEVCGSSHSSKWERWLHINNTHNNEPSIKCELENCGKIFATKSLRNEHLQHHAIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEAAMDAACDNSSFNETTNESVKPDHSNGASEIELNCEQCPELSFTTLDSLCNHRRITHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHTDVTCPYCAKTSASRDHLAAHIAKIHRFMPTVGKDNQNCVTSKSLSADDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHTTYTCHLCNETITSKLGIMTHNRINHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNLDVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAVHSSVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHVHNVPKDQLAIFEYRMDIGAKREGYETPDIIVKEEPDDLEFDEEMCDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFRKDNSDGKRKMRNRNNFECKNCKKQFSTKTLFWNHINVCTRRNSIGRFDMPNNVPTSILESHLKNNNQIQREEPVPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQMKATGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASEEKLTEHATSCNGKSEFEDNTVADEDNAKNDNDEKGSLIADETSVIEEAEEAEEADFESEGEGSRDIHDRDNSENSEEDNSENSDDSDSDSNSSSSEDENENEGEEEEEEENENENESDTRTTSRASGDSVSCNSDSDDESDMDETQVDATEKKAIQLNDINRFRICGDGIQENMPVETNIEDQKTDLTSIATVAEQTTSNNLNDLLISNVPGNMGTDKFEAFRVEKLQQATTSDVDSDNEDDDDNEEDDEENNENEEEEEDEEEEEEEEEDDEDDDDGPPVLSPIMPLLPENESEEYSGTTDRTRHKLSPMVSLSIAKDLEECEITEIPNDTDNMSNTVNFFAANNNDLPVTWDENLDGNVINNDDCNSDAGNMEKNEEFDKEYVKIEVNEGDFEEDSVDENVVDNREDDGDNQVHEVHNLDGTVLMVTNDAEGNQILIEQNVLDIDNEDSNIEAAQYIYPENTYEIEEEDYPTRNETDVMQTDEMQGSMSYVQDTSENEDSMQNDIEENSDVQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01355612;
90% Identity
iTF_00015543;
80% Identity
-