Ypad014767.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Yponomeuta padella
Gene Symbol
L_1
Assembly
GCA_947311075.1
Location
OX371230.1:10230818-10256669[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.7e-06 0.00011 22.9 1.7 1 23 85 107 85 107 0.99
2 17 0.71 48 5.2 5.8 1 23 113 135 113 135 0.97
3 17 9.6e-06 0.00064 20.5 4.1 1 23 141 163 141 163 0.99
4 17 3e-05 0.002 19.0 0.1 1 23 169 191 169 191 0.98
5 17 0.00013 0.0084 17.0 0.1 2 23 205 227 204 227 0.96
6 17 4.3 2.9e+02 2.7 0.1 9 23 258 273 254 273 0.93
7 17 0.47 31 5.7 0.1 3 23 329 349 328 349 0.97
8 17 0.015 0.99 10.5 0.0 3 23 365 385 364 385 0.94
9 17 2e-05 0.0014 19.5 0.6 1 23 393 416 393 416 0.94
10 17 0.037 2.5 9.2 0.1 1 23 421 444 421 444 0.92
11 17 0.022 1.5 9.9 0.0 1 23 505 530 505 530 0.94
12 17 0.00079 0.053 14.5 0.0 2 23 582 603 581 603 0.96
13 17 0.066 4.4 8.4 0.0 1 23 611 633 611 633 0.97
14 17 2.1 1.4e+02 3.7 0.7 2 23 641 662 640 663 0.93
15 17 1.5 99 4.2 0.6 1 23 741 763 741 763 0.94
16 17 0.0051 0.34 11.9 0.2 1 20 771 790 771 793 0.95
17 17 0.17 12 7.1 0.3 1 23 800 822 800 822 0.94

Sequence Information

Coding Sequence
ATGATCATGCTATTCAAAGGGAATAGCAGCAGGCTGGAGCATCTCATTGAAAAGATACAGGCGAACAAAGAGAACCACGACGTCTCACCGGACGACCTGAAAGAGGCCCTGGGCAGCGTGGGCAGCACGGCCGGCAGCTCGTGGCGCTCGTCGACGCCGGAGGCCTCGCCGTCCTCCACGCCGACGTCGGCCGACGCCGCCGACGCCGACGCCGACGCCAGCTTCACGCTCGGCGCCACCGAACACACGCCCTACCAGTGCCAGTTCTGCGACAAGGCCTTCCCGCGGCTCTCCTACTTGAAGAAGCATGAGCAGACACACTCGGACCAGATGCCGTTTCGATGCGAGTTTTGCTCGCGCTTGTTCAAGCACAAGCGCTCCCGAGACCGGCATGTGAAGCTGCACACCGGCGACCGCAAGTACCGGTGCGCGCACTGCGAGTCCGCCTTCTCGAGGAGTGATCACTTGAAGATCCACATGAAGACACACGACAACCAGAAACCGTTCCAATGTACCGTGTGTAACCGCGGCTACAATACGGCGGCTGCGCTGACGTCACACATGCAGGGTCACAAGAGGGACCGGACGGAGCCCGAGCGCCGGCGGGCGCTGCGCTGCTTGCGCTGTGGCGACGCCTTTCGGAGGCCTGATCTCTTACAGGCTCACATGATGACAGCGCACGGCGTTGATTCGGCGACTCTGACCCCACCTCGACGGGTCGCTTCCCAACCGCCTCCAACACTACTGGCTTGCATTTACTGCACTCGCGACACGTTCACCAGCATGGACCAACTTCAACTGCACGTTAGAGCAGTCCATTCGGCATTGATTAATGGAGATACACATTCGGAGACGTCAGCTCCTCAACCAGTGCCAACTGATCTCAGCAGAAAAGGTCAGGAGGAGGCTTCTACACCGAAGCGTCCCAGAACGGACTCTGGACCAGGAACTCCTCAACTTGCGCTATCTCCTAGTACGCTTCTGTGTAGCCAATGCGACGCAGCGTTGCCAGACTTTGAGTCTTTCCGAGTGCATCTAAAAGGGCATTTGGAGGAGGCCGGCGGAGAGTTGGGTCGGGCCAGCCCTGCCCCTTGTCCGCATTGCGGAGCTACCTTTGCTGAAGCGGCGGCAGCGGAGCGTCACCTGGCCGCACATTATTTGGCGGCTTCGTGTGAATACACATGTCACAATTGCGCTCGAAGCTTCCCGTCACCTGATGATCTGCAGAAGCACTTGCTGGATTTGCACGCGCACCACCTCTACCGCTGCTCCCTTTGCAAGGAGATCTTCGACTCTAAAGTCGCGATTCAGGTCCACTTCGCCGTGGCTCACAGCGGCGAGAGCAAGGTGTGGATCTGCCGCGCGTGCGGGCCGGGTCAGGGCGCGGCTCTTCGCTCCGAGGCGGAGGGTGCGGCGCACGTGCGCGCGCGACACGCGGCCCGCCGCTGCGCATGTGGCGCGGTGCTGGCGGGGGAGCGCGCGCTGCGGGCGCACGCGGCCGCCCACGCGCATTACCGGTGCCCCGCGCCCGCGTGCCCCGATACCTTCGCAGTCCAGTATCTGCTCGAGAGGCACATGCAGGCGCAGCATGCTACGCCACCGGGTGTCAATGGCGAGTCCGTGCGAGCGAAGCGGTTGGACAACAACAACGCCCCGGAAGCCAGCATAGACGGCGCGTGCTCCCCGTGCACGACCGGGCCGGCTACCGAGGAGCGGCGCCGCAAAAACGGAGCGGTCGCTCTGCAGTGCGCTTACTGCGGCGAGCGAGCCCGCACGAGGGCCGAGCTCGAGGCTCACACGCGGGCACATTCGGGCGCCGCCGCCGCCAGACACAAGTGCCTCATTTGCGACGAGGTCCTGCCTTCGGCTGCTGTGCTGGCCGAGCATAAATTAACGCATTGCAAGGTCGTGGCCGGAGACACTTGCGCCCGCTGCCGTGCTCGACTGCCGTCCGAAGAATCTTTCCTGAGTCACATGGCTCGGCACCACCCCGCGTTACCGGCACCATGCGTTGTCTGCCGCCAAACGCTTGCTTCCGAAGCCGAGGCGAGGCTCCACGCCCGATTTCATCTTCGAACGTCTGGCGACGAGAAGAGATGTGCAATCTGCCTGAGAGCTCTCCCAGAGGGTGAGACTGGCGGCGAAGGCGCCCGTGCTTGCTCGTCATGCTACGCTCGTCATGCGGCTCCAACTGTTCAGAGGCCGCCACTTCCGACAGAACATGATTGCCGTTTATGCCGTCGAGCTCTCGGATCCCCGACGCGGCTACAGACTCATCTCATCGAGCACACGTTCGCGGGTATCGGGGCATTCACTTGCTACTTGTGCTCCGCTGTGTTCACAAGCGCGAACGGATTGCAGCGCCATCTCCCTGAGCATGCAGCAGCTCCACGGCCATACGATTGTGCTCGCTGCGGATTGAAGTTTTTCTTCCGCGCTGAACTGGATAACCACGCGTTCGTACATCTGGAAGAAGCTGAGATAGCCCAGCGGGCTTTCTACGAGGCGTACGCGAGAGGTGCCGCGTGGGCAGCCATGGCGCCGCAAGAGCCGCCGTCGGTTTCAACTCCGGCTCCCCCTGTGGAAGCTCCGATTAAAAATGAGCCAGATATAAAAGAAGAGAAGAACAATGATGAGTATATCGAAGTGTCGTCGCCACCACCACCCTTGCCGCCGCCGCCAGTCCCCACCCCTCCGCCTGTAGTAAAACAAGAGAAGCCTGACGAAGACTGA
Protein Sequence
MIMLFKGNSSRLEHLIEKIQANKENHDVSPDDLKEALGSVGSTAGSSWRSSTPEASPSSTPTSADAADADADASFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRTEPERRRALRCLRCGDAFRRPDLLQAHMMTAHGVDSATLTPPRRVASQPPPTLLACIYCTRDTFTSMDQLQLHVRAVHSALINGDTHSETSAPQPVPTDLSRKGQEEASTPKRPRTDSGPGTPQLALSPSTLLCSQCDAALPDFESFRVHLKGHLEEAGGELGRASPAPCPHCGATFAEAAAAERHLAAHYLAASCEYTCHNCARSFPSPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWICRACGPGQGAALRSEAEGAAHVRARHAARRCACGAVLAGERALRAHAAAHAHYRCPAPACPDTFAVQYLLERHMQAQHATPPGVNGESVRAKRLDNNNAPEASIDGACSPCTTGPATEERRRKNGAVALQCAYCGERARTRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLSHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRTSGDEKRCAICLRALPEGETGGEGARACSSCYARHAAPTVQRPPLPTEHDCRLCRRALGSPTRLQTHLIEHTFAGIGAFTCYLCSAVFTSANGLQRHLPEHAAAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAAWAAMAPQEPPSVSTPAPPVEAPIKNEPDIKEEKNNDEYIEVSSPPPPLPPPPVPTPPPVVKQEKPDED