Tbis013211.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- L
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010002357.1:7190-18100[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5e-06 8e-05 22.9 1.7 1 23 84 106 84 106 0.99 2 17 0.63 34 5.1 5.8 1 23 112 134 112 134 0.97 3 17 1.7e-06 9.1e-05 22.7 3.1 1 23 140 162 140 162 0.99 4 17 2.6e-05 0.0014 18.9 0.1 1 23 168 190 168 190 0.98 5 17 0.0018 0.096 13.2 0.3 2 23 203 225 202 225 0.94 6 17 6 3.3e+02 2.1 0.1 9 23 256 271 252 271 0.93 7 17 0.3 16 6.1 0.0 3 23 333 353 332 353 0.97 8 17 0.076 4.1 8.0 0.0 2 23 368 389 367 389 0.87 9 17 0.00083 0.045 14.2 0.3 1 23 397 420 397 420 0.94 10 17 0.032 1.8 9.2 0.1 1 23 425 448 425 448 0.92 11 17 0.06 3.2 8.4 0.0 1 23 508 533 508 533 0.91 12 17 0.0007 0.038 14.4 0.0 2 23 587 608 586 608 0.96 13 17 0.49 26 5.5 0.0 1 23 616 638 616 638 0.95 14 17 1.5 84 3.9 0.9 2 23 646 667 645 668 0.93 15 17 0.87 47 4.7 0.3 1 23 742 764 742 764 0.94 16 17 0.0035 0.19 12.2 0.1 1 20 772 791 772 794 0.95 17 17 0.19 10 6.8 0.6 1 23 801 823 801 823 0.93
Sequence Information
- Coding Sequence
- ATGATCATGCTGTTCAAAGGCAATAGCAGTAGGCTGGAGCATCTCATAGAGAAAATCCAGGCAAATAAAGAGAATCGTGATGTGGATATTAAAGAGGCCCTGGGTAGTGTAAGCAGTGCAGCGGGTAGCTCATGGCCATCATCTACGCCTGAACCGTCACCATCGCCGTCATCCACACCTACTTCAGCGGATGCCGGCGAGGGCGATGCAGACCCACCGTTCACTCTTGGTGCTACCGAACATACACCGTATCAATGTCAATTCTGTGATAAAGCCTTCCCCAGGCTATCTTATTTAAAGAAACATGAGCAGACACATTCGGATCAAATGCCGTTTCGTTGTGAATTCTGCTCGCGACTCTTCAAGCATAAACGATCTCGAGATCGTCATGTTAAGCTGCATACCGGAGATCGCAAGTACCGATGCGCTCACTGTGAAGCTGCATTTTCACGCAGTGATCATCTGAAAATCCATATGAAGACGCATGACAACCAGAAACCGTTTCAATGTACTGTCTGTAATCGTGGTTACAACACCGCAGCCGCTTTGACATCACATATGCAGGGCCATAAAAAAGATTGTGATCCTGAACGAAGACGGTCCATGCGTTGCTTGCGATGTGGAGATTCTTTTAGGAGGCTTGATTTGTTGCAAGCACACATGACCAACGTACACGGTGTAGAAGCACCCACATTAACGCCCCCTAGAAGAGTCGCCTCTCATCCTGCTCCGACTTTGTTAGCTTGTATATATTGTACCAGGGATACTTTTACAAGTATGGAACAATTACAACTGCACGTTCGAGCTGCACATTCAGCACTCCTAAATGGAGAATCCATGTCTGAACCTCCACGTATATCGCCGTCCTTACCGCCGCCTGAATCAACCCCAACAGACTTAAGTCGTAGAAGTTCTGAAGGACCGACTGCTAAAAGGCCACGATCTGGTTCTGGTTCGAGAACTCCACAAAAGACATTATCTCCGAATACACTTCTTTGTAATCAATGTGACGCTGCTCTTCCTGATTTTGAAGCGTTTCGAGCACATTTAAAAGGTCATTTAGAAGAAAATAATGGAGAAACGGGAAGAGAGAGTCCCACACCATGTCCCCATTGTGGTGCAACATTTGCAGATATAGCTGCGAGCGAACGTCACTTAGCTGCACATTATTTAGCAGCATCGTGTGAATATACTTGCCACAGCTGTGCTCGTAGCTTTCCGGCACCTGATGACTTACAGAAGCATTTACTTGATCTACACGCTCATCATCTTTATCGATGTTCACTTTGTAAAGAAATTTTTGATTCTAAAGTTGCTATTCAGGTACACTTTGCCGTAGCTCACAGTGGAGAAAATAAAGTTTGGATATGTCGTGGTTGCGGGGTTGGAGGAGGTACTTTACGATCAGAAGCTGAAGGAACCGCTCATGTTCGAGCTCGTCATGCGGCTAAGCGATGTGCTTGTGGAGCTGTGCTAGCTGGTGAAAGGGCTCTTAGAGCTCATACAGCTGCACATGCACATTATAGATGCCCGGCACCAGCATGTGCTGATACATTTGCCGTTCAATATTTACTTGAAAGACATATGCAATCACAACATTCATTACCCTTACATCAAGGGTTAAACGGAGATTCTGGGCGTGTGAAGCGTTTGGATAACAACAATGTGACGGACGGAGGAGAAGGTGCTTGTTCTCCTTGTATCATCGGTCCAGGAGTCGGCGAAGAAAGGCGACGTAAGAATGGCGCAGTTGCTCTACAGTGTGCATATTGTGGTGAAAGAGCAAGAACTAGAGCGGAATTGGAGGCTCACACGAGAGCTCATTCTGGCGCCTCTGCAGCGAGACATAAGTGTCTTATTTGTGACGAGGTCCTACCATCTGCTGGCATCCTAGCTGAACATAAACTTACTCATTGTAAGGTTGTAAGTGGAGATACTTGCGCCAGATGTCGTGTCCGCTTGGTTTCTGAAGAATCTTTTTTAACACATATGGCTCGTCACCACCCTGCACTACCCGCACCGTGTGTCGTCTGTCGTCAGACACTCGCTTCAGAAGCAGAAGCTCGCTTACATGCCCGCTTCCACCTTCGGTCTACTGGTGATGAACAACGCTGTGCAATATGTCTTCGCCCTTTAACTGAAGGAGAGGGTGGAGAAGGAGCTCGTGCTTGTAGTGCTTGTTATGCCCGTCATGCTGCGCCAGTCCCGCCTCCACCGGCAGAACACGATTGCAGATTGTGTCGACGTGCGCTTGGCTCCCCAACTAGACTACAAGCACATCTAATTGAACATACTTTTGCTGGTATGGGGGCGTTTACTTGTTACTTATGCTCAGCAGTGTTCACAAGTGCTGCAGGTCTACAACGTCATCTCCCAGAGCATGCAGCTGCTACACGACCTTATGACTGTGGACGATGTGGTCTAAAATTCTTTTTCCGCGCCGAACTTGATAATCATTCATTTGTACACCTCGAAGAAGCAGAAATCGCACAGAGAGCATTTTATGAAGCATATGCCCGGGGTGCGGCTTGGGCCGCTTTGGCTCCTCCAGAAAGCGCATTACCACCTCCGCTTATACCACCACCAGTAACGACAAATGAAGCTGAAATTAACCCACTAGTAAAAACTGAGCCTGAGATAAAGGAGGAACGTGTTAATGATGAGTATATAGAAGTATCATCACCACCACCCCCACAGACCCCTCCTCCAACGCTTTCTTCTTCGACGACAGCTCCAGTCGTCAAACAAGAGAAGAATGATGAAGAGTGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENRDVDIKEALGSVSSAAGSSWPSSTPEPSPSPSSTPTSADAGEGDADPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKKDCDPERRRSMRCLRCGDSFRRLDLLQAHMTNVHGVEAPTLTPPRRVASHPAPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGESMSEPPRISPSLPPPESTPTDLSRRSSEGPTAKRPRSGSGSRTPQKTLSPNTLLCNQCDAALPDFEAFRAHLKGHLEENNGETGRESPTPCPHCGATFADIAASERHLAAHYLAASCEYTCHSCARSFPAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWICRGCGVGGGTLRSEAEGTAHVRARHAAKRCACGAVLAGERALRAHTAAHAHYRCPAPACADTFAVQYLLERHMQSQHSLPLHQGLNGDSGRVKRLDNNNVTDGGEGACSPCIIGPGVGEERRRKNGAVALQCAYCGERARTRAELEAHTRAHSGASAARHKCLICDEVLPSAGILAEHKLTHCKVVSGDTCARCRVRLVSEESFLTHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRSTGDEQRCAICLRPLTEGEGGEGARACSACYARHAAPVPPPPAEHDCRLCRRALGSPTRLQAHLIEHTFAGMGAFTCYLCSAVFTSAAGLQRHLPEHAAATRPYDCGRCGLKFFFRAELDNHSFVHLEEAEIAQRAFYEAYARGAAWAALAPPESALPPPLIPPPVTTNEAEINPLVKTEPEIKEERVNDEYIEVSSPPPPQTPPPTLSSSTTAPVVKQEKNDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545077;
- 90% Identity
- iTF_01451722; iTF_01452589;
- 80% Identity
- -