Xxan035012.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestia xanthographa
Gene Symbol
-
Assembly
GCA_905147715.1
Location
LR990654.1:20633038-20635377[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 4.5e-06 0.0009 21.5 4.2 1 23 8 31 8 31 0.95
2 19 0.0016 0.32 13.5 0.7 2 23 37 59 36 59 0.94
3 19 2e-05 0.0039 19.5 0.3 2 23 68 90 68 90 0.97
4 19 1.9e-06 0.00038 22.7 1.6 2 23 99 121 98 121 0.95
5 19 1.7e-05 0.0034 19.7 2.5 2 23 129 151 129 151 0.96
6 19 5.4e-06 0.0011 21.3 2.4 2 23 160 182 159 182 0.96
7 19 6.6e-07 0.00013 24.2 0.9 1 23 188 211 188 211 0.98
8 19 0.92 1.8e+02 4.8 0.9 2 23 220 241 219 242 0.93
9 19 0.004 0.79 12.3 0.1 1 23 254 277 254 277 0.98
10 19 0.0041 0.82 12.2 4.1 1 23 302 324 302 325 0.96
11 19 0.0063 1.3 11.6 0.8 2 23 362 384 362 384 0.95
12 19 0.00078 0.16 14.5 5.5 1 23 406 429 406 429 0.97
13 19 0.00017 0.034 16.6 0.8 2 23 436 458 435 458 0.96
14 19 4e-05 0.008 18.5 2.1 2 23 465 487 464 487 0.94
15 19 0.008 1.6 11.3 2.2 1 23 493 516 493 516 0.97
16 19 0.073 14 8.3 4.6 2 23 524 546 524 546 0.95
17 19 0.00013 0.025 17.0 0.5 1 23 553 576 553 576 0.97
18 19 0.017 3.4 10.3 1.4 1 23 583 606 583 606 0.89
19 19 0.041 8.1 9.1 2.8 5 23 623 642 620 642 0.90

Sequence Information

Coding Sequence
ATGTACACAAATCATCTGGATTTCGTTTGTGATTACTGTTCTAGAACTTTCACAAGAAAATACAATTTACAGACTCATATAGAAAACTGTCATATAAACTCTTCGTGTCACTGTGATATTTGTGGCCAGAATTTCGGTAGTCCAGCGGGATTACTACAACACCTATCCCGGGGACATAATAATTATGGTCAACCTTTCCCAGAATGTGAACTGTGCGGTAGAATTTTtacaagaaaacaaaatattactTCTCATATGATAACTGTACATCTACAGGGTTTAGGATACGAAATTCGATGCAGTTTGTGTGAGAAAACTTTCACAACTGAAAGGAATTTAAAAAGACATATGAATCAATTACATAATCCGGATGTTGAGTatcctacctgtaacgattgtcataAAGTTTTCAAAGGGAAACACTCGCTTATCGCTCATATTCAATCAGTTCATAATATCAGCGAGAAAGATGCAATTAAATGCCACTTGTGCGAAAAAGTGTACACTAACAACAGGAACCTAAAAAGGCATATAGAAATGTTTCACGGTGTCAAAGGAGAGTTCAGATGCGATATCTGCCCTAAAGTGTATACTTCAAACCAGAGTTTGCGACGTCATGCCCGAACGAGCCATAGTACTGAAAATCAGGAACATTTAACATGCAACTATTGCATGAAAGTGATAATAGGCCGAGAGAATTTCGAAAGCCACGTGCAATTCCATCACCAGGACACGGAAATGGATAACAAAAACGGAGAATACGTCTGCGAATCGTGCGGTCAAAGTTTCGAAGAAGAACCTGTACTGCGACAGCACGTGAAAACAGAGCATTCTTTTAAAACTTTCTACAAGTACTGCAAGAAATCCTTGCTGAAACAGTATGGGATGGACACACAAAACATATACAATTGTGAATATTGTCATAACTCCTTCTTAACGGTCTACGAGTTGAAGGATCATATGCGGGTGCACCACGATATAGACTACTCCCTTTCAACTTGCAATGTCTGCTTCAATAAGTTTTTCAGTCATGAAACGAGACGCGCACATAGCAACATCTGTTTACCGCCGCCAAACGTCAACACTTGCAGTTACTGTGATAAATTATTCACTGATATTTCCAGTTTAGAGTTCCATACGAGGATCTTTCATCCTCAATCTCAAATCGCAGACTCCAACATTTCATCGACGAATATTGATGAGGAGATCCTCTCGTTTAAATGCGAGCATTGCGATCGCATTTACTACAGCGAGAGATCTCTTAAACACCATATTAAGCTAAAACATACGACAGATGAGGAAGTAGAATGTCAACTCTGCGGCAAAATTTGCAGCAACAAGTACTATTTAGCGTCACATACAAAAATAGTGCATAACAATGATTCTTGGTCCCGCTGCGAGTACTGCGATAAACAGTTTAAATCTAAAAGAAATATCCGAAGACATATTGAGTACACTCATTTAGGCATGCAAAGATACAAATGTATCGAATGCGAGACCTTGTTTAAAGAAAAACGGAGTCTAAGAAAGCATGTGCGGACGAAACATCCCAATTCTGCCACTTTCCCGCAGTGCCATATATGTCAGAAACGGTTTGAATCCGCCAAATCGTGTAAGATACATCTGAAACTGGTGCATTCTTTCAATATGAACACATATCCTTGCCACTTATGTTCTGTGTCATTCAGTTCCAACGAGGCTCTGTCTATACATTTAGAAACGAAGCATTTAGCCGAAGATCAGATCTACAAATGCGAGGAATGCAACTTAGTCTTCAAAGGGCAGGAAAAATTCGACGCTCACAATGACGTTTGTCACGTCAATTTAGTCCCTACGATCAAGCAGAAAGTCCTTCCAAGATGTATACTCTGCATGAAAGATTTTAGCACGCGGAAAACATTGAAACGCCACATCAAAAAGTTCCATGAAGAATTTGACGTTGACGAATTGGCTACTTTCGGTTCGAGACGCAGAACTTTTACAGTGGATTGCGAAGACTGTATCAAGAATTTTAACGACGATTTTCATTTGAACGTATATAACAAGGTGAAACATCTAAGGGACTCTGAGATATTTCAATGTATAACTTGTTTCGAGACATACAATTGCCTAGAGTACGCCATACAAAGGTATAAGCTAACGAACGCAGATTCTTGCAAATCCAAGATGATTCTAAGCGAGCTATGTACAACTGAGATGAGCGAGGAGGAGAATGATTTCTCTCATTTCGGGGCGTTACATGACATGTTGCCTGAGAGTACGACAAGTGAACTTATCATCAAATCGGAACCTGAAGATAGTAGAGAGTCAACGGTAAAGATGGAAGTGGAATCTCCGTAA
Protein Sequence
MYTNHLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCDICGQNFGSPAGLLQHLSRGHNNYGQPFPECELCGRIFTRKQNITSHMITVHLQGLGYEIRCSLCEKTFTTERNLKRHMNQLHNPDVEYPTCNDCHKVFKGKHSLIAHIQSVHNISEKDAIKCHLCEKVYTNNRNLKRHIEMFHGVKGEFRCDICPKVYTSNQSLRRHARTSHSTENQEHLTCNYCMKVIIGRENFESHVQFHHQDTEMDNKNGEYVCESCGQSFEEEPVLRQHVKTEHSFKTFYKYCKKSLLKQYGMDTQNIYNCEYCHNSFLTVYELKDHMRVHHDIDYSLSTCNVCFNKFFSHETRRAHSNICLPPPNVNTCSYCDKLFTDISSLEFHTRIFHPQSQIADSNISSTNIDEEILSFKCEHCDRIYYSERSLKHHIKLKHTTDEEVECQLCGKICSNKYYLASHTKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSATFPQCHICQKRFESAKSCKIHLKLVHSFNMNTYPCHLCSVSFSSNEALSIHLETKHLAEDQIYKCEECNLVFKGQEKFDAHNDVCHVNLVPTIKQKVLPRCILCMKDFSTRKTLKRHIKKFHEEFDVDELATFGSRRRTFTVDCEDCIKNFNDDFHLNVYNKVKHLRDSEIFQCITCFETYNCLEYAIQRYKLTNADSCKSKMILSELCTTEMSEEENDFSHFGALHDMLPESTTSELIIKSEPEDSRESTVKMEVESP*