Xrho032575.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestia rhomboidea
Gene Symbol
-
Assembly
GCA_963853795.1
Location
OY970784.1:8201092-8203431[+]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.051 1.1e+02 4.0 5.7 18 43 9 31 3 37 0.91
2 21 0.048 1e+02 4.1 0.3 17 44 36 60 32 60 0.80
3 21 0.0007 1.5 10.0 0.1 18 43 68 90 65 91 0.87
4 21 4.8e-05 0.1 13.7 1.5 17 44 98 122 95 122 0.91
5 21 0.00031 0.65 11.1 1.2 18 44 129 152 127 152 0.94
6 21 4.2e-05 0.089 13.9 1.5 14 43 156 182 153 183 0.89
7 21 0.0027 5.7 8.1 0.4 18 44 189 212 185 212 0.90
8 21 0.041 87 4.3 5.6 17 43 219 242 213 278 0.91
9 21 0.75 1.6e+03 0.3 0.8 15 41 300 323 284 326 0.68
10 21 3.4 7.1e+03 -1.8 0.2 18 29 333 344 328 351 0.77
11 21 0.13 2.8e+02 2.7 0.0 15 27 359 371 355 385 0.80
12 21 0.17 3.6e+02 2.3 4.7 17 43 406 429 399 430 0.89
13 21 0.037 79 4.4 2.2 14 30 432 452 430 458 0.76
14 21 0.0022 4.6 8.4 3.0 13 43 460 487 447 488 0.79
15 21 0.047 1e+02 4.1 0.8 17 44 493 517 489 517 0.85
16 21 0.27 5.8e+02 1.7 1.7 15 28 521 534 518 547 0.75
17 21 2 4.2e+03 -1.1 0.6 19 43 555 576 551 577 0.73
18 21 9.1 1.9e+04 -3.2 0.1 14 28 580 594 578 596 0.78
19 21 4.3e-05 0.091 13.8 1.9 5 43 605 642 604 643 0.85
20 21 1.2 2.6e+03 -0.4 0.2 15 40 660 687 652 696 0.85
21 21 4.1 8.7e+03 -2.1 0.4 12 27 687 702 676 703 0.76

Sequence Information

Coding Sequence
ATGTACACAAATCATTTGGATTTCGTTTGCGATTACTGTTCAAGAACTTTCACAAGAAAATATAACTTACAGACTCATATAGAAAACTGTCATATAAACTCATCGTGTCACTGTGATATTTGTGGCCAGAATTTCGGCAGTCCAGCGGGATTACTACAACACTTATCCCGGGGACACAATAGTTATGGTCAGCCGTTCCCAGAATGTGAACTGTGCGGCAGAATttttacaagaaaacaaaatatcactTCTCATATGATAACTGTTCATCTGCAGGGGTTAGGATACGAAATTCGGTGCCGTTTGTGTGAGAAAACTTTCACAACAGAAAGGAATTTAAAAAGACATATAAATCAATTGCATAATCCGGATGTTGAGTATCCTACTTGTAACGATTGCCATAAAGTTTTCAAAGGGAAACACTCGCTTATAGCTCATATTCAATCGGTCCATAATATCAGCGAGAAAGATGCAATTAAATGCCACTTGTGCGAAAAAGTGTACACTAACAATAGGAATTTGAAAAGGCATATAGAAATGTTTCATGGTGTAAAGGGGGAGTTCAGATGTGATATCTGCCCTAAAGTGTATACTTCTAACCAGAGTTTGCGTCGGCATGCCCGAACGAGACATAGTACTGAAAATCAGGAACATTTTACATGCAACTATTGCATGAAAGTGATAATAGGCCGAGAGAATTTCGAAAGCCACGTGCAATTCCATCACCAGGACGCCGAAATGGATAACAAAAACGGCGAATACGTCTGCGAATCGTGCGGTCAAAGTTTCGAAGAAGAACCTGTACTGCGACAGCACGTGAAATCAGAGCATTCTTTTAAAACTTTCTACAAGTACTGCAAGAAATCCTTGCTGAAACAGTACGGGATGGACACACAAAACATATACAACTGTGAATATTGTGATAACTCCTTTTTAACGGTCTACGAGTTGAAAGATCATATGCGGGTGCACCACGATATTGAGTACTCCCTTTCAACCTGCAATGTCTGCTTCAATAAGTTTTTCAGTCATGAAACGAGACGCGCACATAGCAACATCTGTCTACCTCCGCCAAACGTCAACACTTGCAGTTACTGTGATAAATTATTCACGGATATTTCCAGCTTAGAGTTCCATACGAGGATCTTTCATCCTCAATCTCAAATCGCAGACTCCAACATTTCATCGACGAATATTGATGAGGAGATCCTCTCGTTCAAATGCGAGCATTGCGATCGCATTTACTACAGCGAGAGATCCCTCAAACATCATATAAAGCTAAAACATACGACAGATGAGGAAGTGGAATGTCAACTCTGCGGCAAAATTTGCAGCAACAAGTACTACTTAGCGTCACATACAAAAATAGTCCATAACAACGATTCTTGGTCCCGCTGCGAGTACTGCGATAAACAGTTTAAATCTAAAAGAAATATCCGAAGACATATTGAGTACACTCATTTGGGCATGCAAAGATACAAATGTATTGAATGCGAGACCTTGTTTAAAGAAAAACGGAGCCTAAGAAAACATGTGCGGACGAAACATCCCAATTCTGCCACTTTCCCGCAGTGCCATATATGTCATAAACGGTTTGAATCCGCCAAATCTTGTAAGATACATCTGAAACTGGTGCATTCTTTTAATATGAACACATATCCTTGCCACTTATGTTCAGTGTCATTCAGTTCCAACGAGGCCCTGACTATACATTTAGAAACGAAGCATTTAGCCGAAGATCAGATCTATAAATGCGAAGAATGCAACTTGGTCTTCAAAGGGCAGGAAAAATTCGACGCTCACAATGACGTTTGTCACGTCAACCTAGTTCCTACGATCAAGCAGAAAGTCCTACCAAGATGTATACTCTGCATGAAAGATTTTAGCACGCGGAAAACATTGAAACGCCACATCAAAAAGTTCCATGAAGAATTTGACGTTGACGAATTGGCGACTTTTGGTTCGAGACGCAGAACTTTCACAGTAGATTGCGAAGACTGTATCAAGAATTTCAACGACGATTTTCATTTGAACGTATATAACAAGGTGAAACATCTAAGGGACTCTGAGATATTTCAATGTATAACTTGTTTCGAGTCATACAATTCCCTAGAGTACGCCATTCAAAGGTATAAGCTAACGAACGCAGATGCCTGCAAATCCAAGATGATTCTAAGCGAGTTATGCACAACTGAGATGAGCGAGGAGGAGAATGATTTCTCTCATTTCGGGGCGTTACATGACATGCTGCCTGAGAGTACGACAAGTGAACTTATCATCAAATCAGAGCCTGAAGATAGTAGAGAGTCAGAGGTAAAGATGGAAATGGATTCGCCGTAA
Protein Sequence
MYTNHLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCDICGQNFGSPAGLLQHLSRGHNSYGQPFPECELCGRIFTRKQNITSHMITVHLQGLGYEIRCRLCEKTFTTERNLKRHINQLHNPDVEYPTCNDCHKVFKGKHSLIAHIQSVHNISEKDAIKCHLCEKVYTNNRNLKRHIEMFHGVKGEFRCDICPKVYTSNQSLRRHARTRHSTENQEHFTCNYCMKVIIGRENFESHVQFHHQDAEMDNKNGEYVCESCGQSFEEEPVLRQHVKSEHSFKTFYKYCKKSLLKQYGMDTQNIYNCEYCDNSFLTVYELKDHMRVHHDIEYSLSTCNVCFNKFFSHETRRAHSNICLPPPNVNTCSYCDKLFTDISSLEFHTRIFHPQSQIADSNISSTNIDEEILSFKCEHCDRIYYSERSLKHHIKLKHTTDEEVECQLCGKICSNKYYLASHTKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSATFPQCHICHKRFESAKSCKIHLKLVHSFNMNTYPCHLCSVSFSSNEALTIHLETKHLAEDQIYKCEECNLVFKGQEKFDAHNDVCHVNLVPTIKQKVLPRCILCMKDFSTRKTLKRHIKKFHEEFDVDELATFGSRRRTFTVDCEDCIKNFNDDFHLNVYNKVKHLRDSEIFQCITCFESYNSLEYAIQRYKLTNADACKSKMILSELCTTEMSEEENDFSHFGALHDMLPESTTSELIIKSEPEDSRESEVKMEMDSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00447464;
90% Identity
iTF_01535147;
80% Identity
iTF_01533266;