Vbom061960.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422143.1:1614886-1616377[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-08 3e-05 26.0 0.2 5 42 18 55 16 58 0.88
Sequence Information
- Coding Sequence
- ATGCGTACATACAAGCGAAAAACTGAGAGagctgctgcttgtcaaaaacaGCTTCATACAGCTGCGAGATCTGTCTtggctaaagaaaaatctataaGAGCTGCAGCGGCTGAATTTGGAATACCAAGAACAACACTAAAAAGATATATTCAGAAATCAGAGTCGCAAGAAAATCCTCCATCTTCTATATTTTATGGCTTAACGCCAAAGAATGTTCGCACACTTGCCTACAAATGtgcaatcaaattcaaaatacaatttCCTCATACCTGGAATGAAAACAAGATCGCTGGTAAAGATTGGATTACGGGGTTTCTGAAAAGGAACCACCAACTGTCAATAAGGAAGCCGGAAGCTACGAGTATGGGCAGGGCCACCACTTTCAACAAAACTAACGTGGATAGCTTTTTCGACAAACTATCTGAGGCTATGGATAGAAACAAGTTCAGTGCTTCAAGCATATTGAACGTTGATGAGACTGGAGTATCCACCGTGTGCAAACCAGGCAAAATAGTTGCGGCTAAGTGCAACAGGAATGTAGGATCAGTGACTTCAGGCGAACGTGGTACAAACGTAACTTTAATAGTAGCCGTCTCAGCTTCTGAGGTTGCAATCCCAGCTATGTTTATTTTTCCtcggaaaaattataaagaccACTTTATTAACGGTGGTCCACCAGACTGCATTGGAACTGCGAATGCTAGCGGTTGGGCCACTAATGAcgaattttttgctttcatgGTTCACTGCATACGGCATGTGAAGCCAACTCAAGAATGCCCCGTATTACTGGTCTTGGACAATCATTCCTCTCACCTCTCAATTGAAACGCTAGAAATAGCCAAAGCCAACGGGATTGTCATGCTCTCGTTTCCACCTCATTGTAGCCACAGGCTTCAGCCCCTAGACGTTTCCGTATttggaccctttaaaaaatatctatccGGGGCACAAGATGGATGGCTACGTAGCAATCCAGGGAGGACAATAACAATTTATGACATTCCCCGAATTGTAGCTGAGTCTCTTCCTTTAGCTACATctccaataaatattattaatggatttaaaaagGCTGGGATATTTCCATACAATAGGGAGATTTTTACTCCCAGTGATTTCGATCCATCATATGTGACAGATCGTCCAGAAACAGGTTCAGTTGTTCCCACTGAACTTCAGGAATCTATTTGCACGCAAACTGGGGCTGATATTGTTGTTGAGAACCCCGCTGAGAACACAGCAAATAACCGTTTGCCGTCTACATCTCGAGGATTCCATACATTTTCGCCAGAAGTAGTTTTGCCGTTTCCAAAAGCTGGGCCAAGGAAGCAAACACTTACCAAAAGAAGGAAGAGATGA
- Protein Sequence
- MRTYKRKTERAAACQKQLHTAARSVLAKEKSIRAAAAEFGIPRTTLKRYIQKSESQENPPSSIFYGLTPKNVRTLAYKCAIKFKIQFPHTWNENKIAGKDWITGFLKRNHQLSIRKPEATSMGRATTFNKTNVDSFFDKLSEAMDRNKFSASSILNVDETGVSTVCKPGKIVAAKCNRNVGSVTSGERGTNVTLIVAVSASEVAIPAMFIFPRKNYKDHFINGGPPDCIGTANASGWATNDEFFAFMVHCIRHVKPTQECPVLLVLDNHSSHLSIETLEIAKANGIVMLSFPPHCSHRLQPLDVSVFGPFKKYLSGAQDGWLRSNPGRTITIYDIPRIVAESLPLATSPINIINGFKKAGIFPYNREIFTPSDFDPSYVTDRPETGSVVPTELQESICTQTGADIVVENPAENTANNRLPSTSRGFHTFSPEVVLPFPKAGPRKQTLTKRRKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00389544; iTF_01520968; iTF_01520971; iTF_01520974; iTF_01520958; iTF_01520970; iTF_01520983; iTF_01520959; iTF_01520972; iTF_01520973; iTF_00688565; iTF_01520950; iTF_01520982; iTF_01116375; iTF_00688566; iTF_00688571; iTF_01520947; iTF_01520953; iTF_01520957; iTF_01520960;
- 90% Identity
- iTF_01520970;
- 80% Identity
- -