Vbom004584.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422140.1:33422455-33424259[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.5e-08 6.4e-05 24.9 0.1 7 42 20 55 16 58 0.87
Sequence Information
- Coding Sequence
- ATGCGTACATACAAGCGAAAAACTGAGAGagctgctgcttgtcaaaaacaGCTTCATCCAGCTGCGAGATCTGTCTtggctaaagaaaaatctataaGAGCTGCAGCGGCTGAATTTGGAATACCAAGAACAACACTAAAAAGATATATTCAGAAATCAGAGTCGCAAGAAAATCCTCGTATGGGTTACGTTGCGCCAAGGCAAGTTTTCGATGCGCAACAAGAAAGTTTATTAAAGGAATATTTGCTAAAAGCATCTTCTATATTTTATGGCTTAACGCCAAAGAACGTTCGCACACTTGCCTACAAATGtgcaatcaaattcaaaatacaatttCCTGATACCTGGAATGAAAACAAGATCGCTGGTAAAGATTGGCTTACGGGGTTTCTGAAAAGGAACCACCAACTGTCAATAAGGAAGCCGGAAGCTACGACTTTTTCGACAAACTATCTGAGGCTATGGATAGAAACAAGTTCAGTGCTTCAAGCATATGGAACGACTGGAGTATCCACCGTGTGCAAACCAGGCAAAATAGTTGCGGCTAAGGGCAAAAGGAATGTAGGATCAGTGACTTCAGGCGAACGTGGTACAAACGTAACTTTAATAGTAGCCGTCTCAGCTTCTGGGGTTGCAATCCCAGCTATGTTTATTTTTCCtcggaaaaattataaagaccACTTTATTAACGGTGGTCCACCAGACTGCATTGGAACTGCGAATGCTAGCGGTTGGGCCACTAATGAcgaattttttgctttcatgGTTCACTTCATACGGCATGTGAAGCCAACTCAAGAATGCCCCGTATTACTGGTCTTGGACAATCATTTCTCTCACCTCTCAATTGAAACGCTAGAAATAGCCAAAGCCAACGGGATTGTCATGCTCTCGTTTCCACCTCATTGTAGCCACAGGCTTCAGCCCCTAGACGTTTCCGTATttggaccctttaaaaaatatctatccGGGGCACAAGATGGACGTAGCAATCCAGTGAGGACAATAACAATTTATGACATTCCCCGAATTGTAGCTGAGTCTCTTCCTTTAGCTACATctccaataaatattattaatggatttaaaaagGCTGGGACATTTCCATACAATAGGGAGATTTTTACTCCCAGTGATTTCGACCCATCATATGTGACAGATCGTCCAGAAACAGGTTCAGTTGTTCCCACTGAACTTCAGGAATCTATTTCCAGGCAAACTGGGGCTGATATTGTTGTTGAGAACCCCGCTGAGAACACAGCAAATAACCGTTTGCCGTCTACATCTCGAGGATTCCATACATTTTCGCCAGAAGTAGTTTTGCCGTTTCCAAAAGCTGGGCCAAGGAAGCAAACACTTACCAAAAGAAGGAAGAGACGAGCTGCAATCTTAACCGACACCCCAGAAAAGGATGCCTTGCAAgaggaacaaaaacaaaggaaaacggcCAAAGGAAaagttgacaaaaagaaaaaaacacaaatcaagaaaaaagtgttgcaaaaatcaagttccgaagaggaagaagagcCGGAATGTTTTTGTCTAATGTGCATGGAAGCATTCTCTGAAAGTTTACCGGGCGAGGAGTGGGTACAGTGCCATACTTGCCGAAATTGGGCTCATACGAAGTGCTCACATGGACTTGGGGTcgattttatttgcattaattgCAATAGCGACTATGATtcctaa
- Protein Sequence
- MRTYKRKTERAAACQKQLHPAARSVLAKEKSIRAAAAEFGIPRTTLKRYIQKSESQENPRMGYVAPRQVFDAQQESLLKEYLLKASSIFYGLTPKNVRTLAYKCAIKFKIQFPDTWNENKIAGKDWLTGFLKRNHQLSIRKPEATTFSTNYLRLWIETSSVLQAYGTTGVSTVCKPGKIVAAKGKRNVGSVTSGERGTNVTLIVAVSASGVAIPAMFIFPRKNYKDHFINGGPPDCIGTANASGWATNDEFFAFMVHFIRHVKPTQECPVLLVLDNHFSHLSIETLEIAKANGIVMLSFPPHCSHRLQPLDVSVFGPFKKYLSGAQDGRSNPVRTITIYDIPRIVAESLPLATSPINIINGFKKAGTFPYNREIFTPSDFDPSYVTDRPETGSVVPTELQESISRQTGADIVVENPAENTANNRLPSTSRGFHTFSPEVVLPFPKAGPRKQTLTKRRKRRAAILTDTPEKDALQEEQKQRKTAKGKVDKKKKTQIKKKVLQKSSSEEEEEPECFCLMCMEAFSESLPGEEWVQCHTCRNWAHTKCSHGLGVDFICINCNSDYDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01520954;
- 90% Identity
- iTF_01520970;
- 80% Identity
- -