Onob003227.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- -
- Assembly
- GCA_963555765.1
- Location
- OY743224.1:75421533-75423234[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-09 1e-06 28.9 0.2 3 42 16 55 15 58 0.91 2 2 5.1 4.9e+03 -2.1 0.0 25 30 357 362 356 362 0.86
Sequence Information
- Coding Sequence
- ATGCGTACATACAAGCGAAAAACTGAGAGAGCTGCTGCTTGTCAAGAACAGCTAAATACAGCTGCGAGATCTGTCTTGGCTAAAGAAAAATCTATAAGAGCAGCAGCGGCTGAATTTGGAATACCAAGAACAACACTAAAAAGATATATTCAGAAAGCAGAGTCACAAGAAAATCCTCGTATGGGTTACGTTGCGCCAAGGCAAGTTTTCGATGCGCAACAAGAAATGTTATTGAAGGAATATTTGCTAAAAGCATCTTCTATATTTTATGGCTTAACGCCAAAAAATGTTCGCACGCTTGCCTACAAATgcgcaatcaaattcaaaatacgaTCTCCTGATACCTGGAATGAAAACAAGATCGCTGGTAAAGATTGGCTTACAGGTTTTCTGAAAAGGAACCACCAACTGTCAATTAGGAAGCCGGAAGCTACGAGTCTGGGCAGAGCGACCTCTTTCAACAAAACCAACGTGGATGGCTTTTTTGACAAACTATCTGAGGCTATGGATAGGAACAAGTTCAGTGCTTCAAACATATGGAACGTTGATGAGACTGGTGTATCCACCGTGTGCAAACCAGGCAAAATAGTTGCGGCTAAGGGCAAAAAGAATATAGGATCAGTGACTTCAGGCGAACGTGGTACAAATGTAACACTAATAGTAGCCGTCTCAGCTTCTGGGGTTGCAATCCCAGCTATGTTTATTTTTCCTCGGAAAAATTACAAAGACCACTTTATTAACGTTGGTCCACCAGACTGTATTGGAACTGCGAATGCTAGCGGTTGGGCCACCAATGACGAATTTTTTGCTTTCATGGTTCACTTCATACGGCATGTGAAGCCAACTCAAGAATGCCCCGTGTTACTGGTCCTAGACAATCATTCCTCTCATCTCTCAATTGAAACGCTAGAAGTAGCCAAAACCAACGGGATTGTCATGCTCTCGTTTCCTCCTCATTGCAGCAATAGGCTTCAGCCCCTAGACGTTTCCGTATTTGGACcctttaaaaaatatctatccGGGGCACAAGATGGTTGGCTACGTAGCAATCCAGGGAGGACGATTACAATTTATGACATTCCCCGAATTGTAGCTGAGTCTCTTCCTTTAGCTACATCtccaataaatattattaatggaTTTAGAAAGGCTGGGATATTTCCATACAACAGGGAGATTTTCACCCCCAGTGAATTCGACCCATCATATGTGACCGATCGTCCAGAAACAGtgttgcAAAAATCAAGTTCCGAAGAGGAAGAAGAGCCGGAATGTTTTTGTCTAATGTGCATGGAAGCATTCTCAGAAAGTTTACCGGGCGAGGAGTGGGTACAATGCCATACTTGCCGAAATTGGGCTCATACGAAGTGCTCACATGGACTTGgggttgtttttatttgcattaactGCAATAGCGACTACGATtcctaa
- Protein Sequence
- MRTYKRKTERAAACQEQLNTAARSVLAKEKSIRAAAAEFGIPRTTLKRYIQKAESQENPRMGYVAPRQVFDAQQEMLLKEYLLKASSIFYGLTPKNVRTLAYKCAIKFKIRSPDTWNENKIAGKDWLTGFLKRNHQLSIRKPEATSLGRATSFNKTNVDGFFDKLSEAMDRNKFSASNIWNVDETGVSTVCKPGKIVAAKGKKNIGSVTSGERGTNVTLIVAVSASGVAIPAMFIFPRKNYKDHFINVGPPDCIGTANASGWATNDEFFAFMVHFIRHVKPTQECPVLLVLDNHSSHLSIETLEVAKTNGIVMLSFPPHCSNRLQPLDVSVFGPFKKYLSGAQDGWLRSNPGRTITIYDIPRIVAESLPLATSPINIINGFRKAGIFPYNREIFTPSEFDPSYVTDRPETVLQKSSSEEEEEPECFCLMCMEAFSESLPGEEWVQCHTCRNWAHTKCSHGLGVVFICINCNSDYDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01520954;
- 90% Identity
- -
- 80% Identity
- -