Vbom044448.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422141.1:150684096-150685685[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-08 3.5e-05 25.8 0.2 5 42 18 55 16 58 0.88 2 2 6.5 4.9e+03 -0.3 0.1 25 31 357 363 356 364 0.85
Sequence Information
- Coding Sequence
- ATGCGTACATACAAGCGAAAAACTGAGAGagctgctgcttgtcaaaaacaGCTTCATACAGCTGCGAGATCTGTCTtggctaaagaaaaatctataaGAGCTGCAGCGGCTGAATTTGGAATACCAAGAACAACACTAAAAAGATATATTCAGAAATCAGAGTCGCAAGAAAATCCTCGTATGGGTTACGTTGCGCCAAGGCAAGTTTTCGATGCGCAACAAGAAAGTTTATTAAAGGAATATTTGCTAAAACCATCTTCTATATTTTATGGCTTAACGCCAAAGAATGTTCGCACACTTGCCTACAAATGtgcaatcaaattcaaaatacgaTTTCCTGATACCTGGAATGAAAACAAGATCGCTGGTAAAGATTGGCTTACGGGGTTTCTGAAAAGGAACCACCAACTGTCAATAAGGAAGCCGGAAGCTACGAGTATGGGCAGGGCCACCTCTTTCAACAAAACTAACGTGGATAGCTTTTTCGACAAACTATCTGAGGCTATGGATAGAAACAAGTTCAGTGCTTCAAGCATATGGAACGTTGATGAGACTGGAGTATCCACCGTGTGCAAACCAGACAAAATAGTTGCGGCTAAGGGCAAAAGGAATGTAGGATCAGTGACTTCAGGCGAACGTGGTACAAACGTAACTTTAATAGTAGCCGTCTCAGCTTCTGGGGTTGCAATCCCAGCTATGTTTATTTTTCCtcggaaaaattataaagaccACTTTATTAACGGTGGTCCACCAGACTGCATTGGAACTGCGAATGCTAGCGGTTGGGCCATTAATGAcgaattttttgctttcatgGTTCACTTCATACGGCATGTGAAGCGAACTCAAGAATGCCCCGTATTACTGGTCTTGGACAATCATTCCTCTCACCTCTCAATTGAAACGCTAGAAATAGCCAAAGCCAACGGGATTGTCATGCTCTCGTTTCCATCTCATTGTAGCCACAGGCTTCAGCCCCTAGACGTTTCCGTATttggaccctttaaaaaatatctatccGGAGCACAAGATGGATGGCTACGTAGCAATCCAGGGAGGACAATAACAATTTATGACATTCCCCGAAATGTAGCGGATTCTCTTCTTTTAGCTACATCttcaataaatattattaatggatttaaaaagGCTGGGATATTTCCATACAATAGGGAGATTTTTACTCCCAGTGATTTCGACCCATCATATGTGACAGATCGTCCAGAAACAGGTTCAGTTGTTCCCACTGAACTTCAGGAATCTATTTCCACGCAAACTGGGGCTGATATTGTTGTTGAGAACCCCGCTGAGAACACAGCAAATAACCGTTTGCCGTCTACATCTCGAGGATTCCATACATTTTCGACAGAAGTAGTTTTGCCGTTTCCAAAATCTGGGCCAAGGAAGCAAACACTTACCAAAAGAAGGAAGAGACGAACTGCAATCTTAACCGACACCCCAGAAAAGGAAGAATTTCATAAAGAACCCAGATGTTCATTCTTTTCATTGATCCTAGCCTCATAG
- Protein Sequence
- MRTYKRKTERAAACQKQLHTAARSVLAKEKSIRAAAAEFGIPRTTLKRYIQKSESQENPRMGYVAPRQVFDAQQESLLKEYLLKPSSIFYGLTPKNVRTLAYKCAIKFKIRFPDTWNENKIAGKDWLTGFLKRNHQLSIRKPEATSMGRATSFNKTNVDSFFDKLSEAMDRNKFSASSIWNVDETGVSTVCKPDKIVAAKGKRNVGSVTSGERGTNVTLIVAVSASGVAIPAMFIFPRKNYKDHFINGGPPDCIGTANASGWAINDEFFAFMVHFIRHVKRTQECPVLLVLDNHSSHLSIETLEIAKANGIVMLSFPSHCSHRLQPLDVSVFGPFKKYLSGAQDGWLRSNPGRTITIYDIPRNVADSLLLATSSINIINGFKKAGIFPYNREIFTPSDFDPSYVTDRPETGSVVPTELQESISTQTGADIVVENPAENTANNRLPSTSRGFHTFSTEVVLPFPKSGPRKQTLTKRRKRRTAILTDTPEKEEFHKEPRCSFFSLILAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01520954;
- 90% Identity
- iTF_01520970;
- 80% Identity
- -