Cran006288.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638382.1:18566099-18567529[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.8e-09 4.1e-06 26.7 0.1 3 37 16 50 15 58 0.89 2 3 3.8 4.1e+03 -2.1 0.0 25 30 327 332 326 332 0.86 3 3 3.9 4.2e+03 -2.1 0.2 31 39 440 449 439 451 0.82
Sequence Information
- Coding Sequence
- ATGCGTACATACAAGCGAAAAACTGAGAGAGCTGCTGCTTGTCAAGAACAGCTAAATACAGCTGCGAGATCTGTCttcgctaaaaaaaaatctctaagaGCAGCAGCGTCTGAATTTGGAATACCAAGAACAACCCTAAAAAGATATATTCTGAAAACAGAGTCGCAAGAAAATCCTCGTATGGGTTACGTTGCGCCAAGGCAAGTTTTCGATGCGCAACAAGAAATGTTATTAAAAGAATATTTGCTAAAAGCATCTTCTATATTTTATGGCTTAACGCCAAAGAATGTTCGCACGCTTGCCTACAAATGTGCAATCATATTCAAAATACGATTTCCTGATACCTGGAATGAAAACAAGATCGCTGGTAAAGATTGGCTTACGGGGTTTCTTAAAAGGAACCACCAACTGTCAATTAGGAAGCCGGAAGCTACGAGTATGGGCAGAGCCACCTCTTTCAACAAAACTAACGTGGATAGCTTTTTTGACAAACTATCTGAGGTTATGgatagaaaaagaaatataGGATCGGTGACTTCAGGCGGACGTGGTACAAACGTTACTTTAATAGTAGCCGTCTTAGCTTCTGGGGTTGCAATCCCAGCTACGTTTATTTTTCCTCGGAAAAATTACAAAGACCACTTTATTAACGGAGGTCCACCAGACTGCATTGCAACTGCAAATGCTAGCGGTTGGGCCACCAATGACGAATTTTTTGCTTTCATAGTTCACTTCATACAGCATGTGAAGCCAACTCAAGAATGCCCCGTATTACTGGTCCTGGACAATCATTCCTCTCACCTCTCAATTGAAACGCTAGAAATAGCCAAAGCCAACGGCATTGTCATGCTTTCGTTTCCACCTCATTGTAGCCATAGGCTTCAGCCCCTAGACGTTTCCGTATTTGGAccctttaaaaaatatttatctgGGGCACAAGATAGATGGCTACGTAGCAATCCAGGGCGGACAATTACAATTTATGACATTCCCCGAATTGTGGCTGAGTCTTTTCCTTTGGCTACATCTCCAATAAATATTATCAATGGATTTAAAAAGGCTGGGATATTTCCATACAACAGGGAGATTTTTACTCCCAGTGAATTCGACCCATCATATGTGACAGATCGTCCAGAAGCAGGTTCAGCTGTTCCCAATGAACTTCAAGAATCTATTATCCAGCAAACTGGGGCTGATATTGTTGTTGAGAACCCTGCTGAGAACACAGCAAATAACCCGTTGCCATCTACATCTCGAGGATTTCATACATTTTGGCCAGAAGTAGTTTTGCCGTTTCCAAAAGCTGGGCCAAGGAAGCAAACACTTACCAAAAGGAGGAAGAGACGAGCTGCAATCTTAACTGTCACCCCGGAAAAGGATGCCTTGCAAGAGgaacaaaaacaaaggaaaacgtGTTATGGTTCGGTGTAA
- Protein Sequence
- MRTYKRKTERAAACQEQLNTAARSVFAKKKSLRAAASEFGIPRTTLKRYILKTESQENPRMGYVAPRQVFDAQQEMLLKEYLLKASSIFYGLTPKNVRTLAYKCAIIFKIRFPDTWNENKIAGKDWLTGFLKRNHQLSIRKPEATSMGRATSFNKTNVDSFFDKLSEVMDRKRNIGSVTSGGRGTNVTLIVAVLASGVAIPATFIFPRKNYKDHFINGGPPDCIATANASGWATNDEFFAFIVHFIQHVKPTQECPVLLVLDNHSSHLSIETLEIAKANGIVMLSFPPHCSHRLQPLDVSVFGPFKKYLSGAQDRWLRSNPGRTITIYDIPRIVAESFPLATSPINIINGFKKAGIFPYNREIFTPSEFDPSYVTDRPEAGSAVPNELQESIIQQTGADIVVENPAENTANNPLPSTSRGFHTFWPEVVLPFPKAGPRKQTLTKRRKRRAAILTVTPEKDALQEEQKQRKTCYGSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01520954;
- 90% Identity
- -
- 80% Identity
- -