Tdic007911.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- egg
- Assembly
- GCA_014905495.1
- Location
- BNES01000022.1:6112372-6150486[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.73 3.6e+03 -1.9 0.0 17 35 470 488 470 489 0.85 2 3 0.35 1.7e+03 -0.9 0.0 31 42 688 699 653 703 0.85 3 3 2.5e-15 1.3e-11 44.4 0.1 5 75 729 792 726 794 0.91
Sequence Information
- Coding Sequence
- ATGGATGTAGAAATTATTGATGATGATAGCCCTCCCGGGGAACCGCCGAAACAATTAAACACATCAGAAAATGCAGATAAAACGCCTAACAACGAAGTGGTTATTTTGGACGACGACCCTATGTCAGAATGTGAAACAATTGATTTAGTTCGTTCAGAAATGACTGGAAATACCAAGTGCATCAACTACGCGTGCAAAGGCGGTGATCTGATGATTGAACCACCCGGATTTTGCCTCAGCTTCTACAGAGTGAAAAACAAaccaaataaaaaacaacagaTTTGCACCGACTGTTACGACAATGCAGTCGAACACTATGATAAGTTAGCCGAAGCATTGACAACAAAAGAATCTCTGCTAGATGTAGAATTACCATTCAGAAACGATGTGGTTGAGATAGAAGACTCGGATTCCGATGAGGAGAGTACGGATGATGTGCATCTCGATACTGAAACAGTGCAGATGTTAGAGGAACATTTCGATAGTGCGATGAGTACTGTTTTGAACAAGTACGATTTCAATGGTCAAATCGATAAGGCTTTAAATGCATTGAATAGGCGATGCAATACTATTAATGATTCCTTTCTGGAAGTTAAAACAATGTTTAAGAGTATACGAAGTGAAACAGATGAAATGATCTTTCAACTGTCCGATATCCTTCGACCAGATAATGTGGAACTGCTCCCGCTGGATATTACTAATGCTAAGACGCAGGTTGTCAGAAATCAACCAATTAGAAGAACAAAAGttGCTGCACCTGCTGTTCCAAGAACTCTAGTATTTCAAAATACCTCCCCCAGAGTGGTTCAGTCCACTTCAACTACTCCAACAGCATCGATTGCTAAGGGTCCAGTAATAACTCCTAAAACTCCAATATCATATGTGAGAACTCCTGCTCTACCTAAACCTCCAATTCTAGCTAAAGCTGCCCCGGTTCTATCTAAAATACCAGTACCACCTCTATCGGCTATAAAGTCAGCTGCAACTGCAGTAGGGTCAGGTTCATCGATTATACCTGATACAGATTCAAATCTCATAGTTCTACAAGAGTCTCAGAACGATTCAGGTGGCTTTGATATGCAGTCTGCATTTGGGGATGATCCCGATGGGCCACCTACTAATCTACCTCCAAAGGGACCGTTGGTAAAGCCTCCATTGATTGTAGGTGAAACCTACTATGCCAATAGATCGGAAATAATCGGAGCTTGGGTGAAGGTCACGCTGAAGGAGATAATTATCCCAGGCACACGGAGGGACGGTCAAATATACACGAACACCATGTACGTGGTCGCGATTGAAAGTAGACAGAAGATCATTAGACAGAAGATTGTAACCGGAAGAGAGATCGCTTACTCACAGCCGGCTAATGTGCAGTTAGATGTGGGTGCTCGCGTTATAGCCGTCTTCCGCGAAATACTCTTGCCGGAAGAGGCCAGTCAAAGGGTAAAGAAGGACGTCTTCTATCCGGGAATCGTAGCGGAGCCattgcaaattagcaacaagTTCCGGTATTTAATATTCTTCGACGACGGTTACGCTCAATACGTCAACTTTAATTTAGTGCATCCGATTTTCGAAGCGAGTAAAGAGGTTTGGGAGGATGTGAACATCAATTCTCGTGGCTTCATTAAGAAATACCTGGATAAATATCCGGAGAGGCCGATGGTAAAGTTACACAAGGATCAAGCTATCAGGACCGAATACAACGGGAAATGGTGGATAACGACCGTCATGAGCGTCGATTGCTCACTCGTTCAAATGTTCTTCGACGCTTCCGGTCGGATCGAATGGATATACAGAGGATCGACCAGATTGAATCCCATGTTTAAGGAGGAGCAAGCGGCCAGCAATAGGCTGCAGCATCGTCAGAGGATGACGAGGAAGGCTAATACTACTGCACCGTACGTCGAATATACACGCTCTGATCCGGAACAACCCGAACAACCACCACCCCAGCGATCTGTCGCTAGAAAGAGCACGTCGAGACCTCcttctaataataacaatattacctACAGAGTAAATCAATACTTGCCGGTACCGCATCGTGAAGCTCCAGCGACGAAGATTGTGTATTACACTCCGAGACGTCAAAAGCCGAAGACTAATGTCTATACTCCACATTCGTGTAACGCCAAATGCAAGGAGTACATGTACTGTTCGCTCTCGCGACTGAAAGGTTATAGTCCTCTGTCCAAGCCGTTACTCTGCGGATTCTACCGTTTGATGTACAAGTGCAAGAATAAGAAGAGCGTACTCTATAAGGCACCTTGCGGAAGAACGTTGCGTAACATGCAGGAGGTGCACATGTACTTGAGAGTCACCAGATCGGATTTGACGGTAGATCTCTTCGATTTCAACGTATACGTTCGTTGTTTGGCCGAATTCATGGTTGAGCAGAAGAATATTCTTATAAAAGATTTGTCGCAAGGGAAAGAAGAATGTCCGATTACAGTTGTTAACTATGTCAATTCGGCGCAGTTGAACTTCTGTAATTATTCTACTAGGAGGGAGCCTATGGAAGGTGTTAATCTCAATACGCATACTGAGTTTTTGACCGGATGTGACTGCACTGATGATTGCATTGATAGACAAAAGTGTTCATGTTGGCAACTAACTTTGCAATGTCTAAAATACATGGATAAGGATACCGATCCCCAGACAGTAGGCTACCAGTACAGGAGACTACCAGAGCCTATATTTTCAGGAATATACGAATGCAATAGGAAGTGCAAATGCGCCTCTACATGCTTGAATAGAGTCGTCCAAAACCCGCTCCACCACAAGCTTCAAATATTCCAAACCGACATGAAGGGTTGGGGAATTCGCTGCCTGAACGATATTCCGCAAGGTTCTTTCATCTGCATCTATGCTGGAGTGTTATTAACAGAAGATATGGCAAATAGgGACGGCAAATTCTATGGGGACGAATACTTAGCCGAATTAGACTTCATAGAGACCGCCGAACGGACCAAGGAAGATTACGAAGAGGACCCGTATCACGAGGAAGTGGAGAAGGACTTAAAGTCGCCGCATAGATCCCCCGAGGATAGCGCACCCGACGATGACGATGACTACGAGGAAGACGAGAGCATTAGAAACGCCGCGGACGATAGAGATTTCGTCCCGGCGAATTTTCAAGCTAAGAAACACAGCGAGTTGGATAGCGGGATTCGGACGAGGTTGAGGAAGCGGCAGGAAGAGGTGTTGATTAAGCAAGAGAAGAGGGCCGTCATTCCAGCAAGCATGACCGATGACGATACTGTTATGATCAGCGATGATGAAGATTACGTACCTAGAGAGCCGTCCAGCTTCAATCCTCAAGATTCCAGCCTTACCGAAGGAGGGGAAAGAAGGTACAAGTCCGTACGGGAGATGTTCGGCACGGACGAGGATGTTTACATTATGGACGCTAAAAATACGGGAAACATCGGCAGGTTCCTGAATCACTCCTGTTCGCCCAATATTTTCGTTCAAAACGTTTTCGTGGATACCCACGACTTGCGCTTCCCATGGGTCGCCTTCTTTACTCTCAGTTACGTGAGGGCCGGTACCGAGCTTACTTGGAACTACAATTACGATATAGGCAGTGTACCCGGAAAGGAACTATCTTGCTATTGTGGTTCGAGCGAGTGCAAGGGTcggttattgtaa
- Protein Sequence
- MDVEIIDDDSPPGEPPKQLNTSENADKTPNNEVVILDDDPMSECETIDLVRSEMTGNTKCINYACKGGDLMIEPPGFCLSFYRVKNKPNKKQQICTDCYDNAVEHYDKLAEALTTKESLLDVELPFRNDVVEIEDSDSDEESTDDVHLDTETVQMLEEHFDSAMSTVLNKYDFNGQIDKALNALNRRCNTINDSFLEVKTMFKSIRSETDEMIFQLSDILRPDNVELLPLDITNAKTQVVRNQPIRRTKVAAPAVPRTLVFQNTSPRVVQSTSTTPTASIAKGPVITPKTPISYVRTPALPKPPILAKAAPVLSKIPVPPLSAIKSAATAVGSGSSIIPDTDSNLIVLQESQNDSGGFDMQSAFGDDPDGPPTNLPPKGPLVKPPLIVGETYYANRSEIIGAWVKVTLKEIIIPGTRRDGQIYTNTMYVVAIESRQKIIRQKIVTGREIAYSQPANVQLDVGARVIAVFREILLPEEASQRVKKDVFYPGIVAEPLQISNKFRYLIFFDDGYAQYVNFNLVHPIFEASKEVWEDVNINSRGFIKKYLDKYPERPMVKLHKDQAIRTEYNGKWWITTVMSVDCSLVQMFFDASGRIEWIYRGSTRLNPMFKEEQAASNRLQHRQRMTRKANTTAPYVEYTRSDPEQPEQPPPQRSVARKSTSRPPSNNNNITYRVNQYLPVPHREAPATKIVYYTPRRQKPKTNVYTPHSCNAKCKEYMYCSLSRLKGYSPLSKPLLCGFYRLMYKCKNKKSVLYKAPCGRTLRNMQEVHMYLRVTRSDLTVDLFDFNVYVRCLAEFMVEQKNILIKDLSQGKEECPITVVNYVNSAQLNFCNYSTRREPMEGVNLNTHTEFLTGCDCTDDCIDRQKCSCWQLTLQCLKYMDKDTDPQTVGYQYRRLPEPIFSGIYECNRKCKCASTCLNRVVQNPLHHKLQIFQTDMKGWGIRCLNDIPQGSFICIYAGVLLTEDMANRDGKFYGDEYLAELDFIETAERTKEDYEEDPYHEEVEKDLKSPHRSPEDSAPDDDDDYEEDESIRNAADDRDFVPANFQAKKHSELDSGIRTRLRKRQEEVLIKQEKRAVIPASMTDDDTVMISDDEDYVPREPSSFNPQDSSLTEGGERRYKSVREMFGTDEDVYIMDAKNTGNIGRFLNHSCSPNIFVQNVFVDTHDLRFPWVAFFTLSYVRAGTELTWNYNYDIGSVPGKELSCYCGSSECKGRLL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627212; iTF_00956312; iTF_01120876; iTF_00626201; iTF_01252828;
- 90% Identity
- -
- 80% Identity
- -