Obor014785.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- egg
- Assembly
- GCA_902654985.1
- Location
- LR736874.1:6218849-6233639[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.29 1.3e+03 -0.9 0.0 31 42 710 721 678 725 0.87 2 2 3.3e-16 1.5e-12 47.0 0.1 5 75 751 814 748 816 0.91
Sequence Information
- Coding Sequence
- aTGGAAGAACCAATGGACGTGGAAATTATTGACGATGATACTCCTCCCAATGAACCGGCAAAAGAATCAGATATCTCAAAAACAGCCGATACAACATCTAACAATGAAGTGGTTGTTTTGGACGACGAAATTTCACCAGAGTGCGAAACAATTGATTTGGTCCATTCAGAGATGACAGGAAACACGAAATGTATAAACTATGCATGCAAAGGTGGTGATATGATGATAGAACCACCCGGATTTTGCCTCAGCTTCTATAGAGTGAAAAACAAACCTAATAAGAAACAACAGATTTGCACTGATTGTTACGATAATGCAATAGAGCATTATGATAAATTAGCCGAAGCATTGATGACAAAAGGATCTCTGTTAGATGTAGAATTACCATTTAGAAATGATGTAGTTGAAATAGAAGATTCCGATTCCGATGAAGAAAGTACAGACGATGTGCATCTGGATTCCGAAACGGTGCAGATGTTGGAAGAACATTTCGATAGTGCGATGAGTGCTGTTATGAACAAGTATGATTTCGATGAACAGATTAATAAAGCTTTAAATGCATTGAATACACGGTGCGATGCTGTTAAGGATTCCTTCGTGGAAGTTAAAtcaatgttcaaaaatatacgGTCGGAAACGGATAATATGATTTTTCAACTGTCCGATATGCTTCGACCGGATAATGTGGAATTACTGCCGTTGGATATTACCAATAATAAAGCACAAGTAGTCAGAAATCAACCAGTTAGAAGAACGAAAGCTGGTTCGTCAGTTACTCCGCCAGCATCTCCAAGGCCACTTGTATTTCAAAAGACTCCTACTAGAGCAGTCCAATCCACTTCCACTACTGCGACCATGTCAACTGCTAAGGGTTCAGGACCAATTTCAAAAACTCAGACACCCAAAACTCCAGTtctgcccaaatcttcaattcTACCTAAGGGTCCAGTTCAACCCAAGACTCCAATTCTATCTAAGACTCCAGTTGTGCCTAAACCTCCAGCTCTGTCCAGAGTAGTACCGCCTCTGACAATGATGAAAGCAACTACCGCTTCGGTAGTGTCAAATACAATAACTCCTGATACGGATTCAAATCTTATAGTTTTGCAAGAGGTTAAGAAGGATTCAAGTGGCTTTGACGCTCAGTCTTCATTCACAGGTGATCCAGATGCACCACCTGGTAATCTACCTTCAAGGGGACAGTTAATAAAACCTCCGTTAATTGTAGGTGAAACTTACTACGCCAACAGATCTGAAATAATCGGAGCTTGGATTAAAGTCACATTGAAGGAGATAATCGTCCCAGGTACGCGGAGGGATGGTCAAATATATACCAACACTATGTACGTAGTAGCAATCGAGAACAGGCAAAAGATCATTAGACAGAAGATTGTAACCGGTAGAGAAATCGCTTATTCCGTGCCGGCTAATGTGCAGTTGGACGTTGGCGCGCGAGTGATAGCTGTCTTCCGCGAAGTGCTGTTACCGGAAGAAGCTAGAGACAGAATAAAGAAGGACGTCTTCTATCCGGGAATAGTAGCTGAACCATTGCAATCTAGCAATAAATAcaggtatctaatattttttgatgatgGTTACGCGCAATACGTCAACTTCAGTTTGGTGCATCCGATTTACGAGGCGAGCAAAGATGTTTGGGAAGACGTGAACATCAATTCTCGcggttttattaagaaatatctCGAGAAGTATCCGGAAAGGCCCATGGTGAAGTTACACAAGGATCAAACGATCAGAACTGAATATAATGGAAAATGGTGGATAACAACCGTGATGAGCGTGGATTGTTCCCTTGTCCAGATGTTCTTCGATGCTTCCGGTAGAATAGAATGGATCTATAGAGGATCGACGCGATTGAATCCCATGTTTAAGGAGGAGCAAGCTGCCAGTAATAGGTTGCAACATCGCCAGAGAATGACCAGAAAAGCTAACACTACGGAGCCCTATGTTGAATACACAAGATCTGATCCTCAGCAACCCGAACAACCACCACCCCAACGGTCTGTTGCTAGGAAGAGCACGTCAAGGCCtccttctaataataataatataacgtaTAGGGTGAATCATTTCTTACCAATTGCGACTCCCCGAGAAGCTCCGGCAACAAAGATCGTGtattacACTCCAAGACGACAGAAACCAAAAACCAACGTCTATACTCCACACTCATGCGCTTCCAAATGCAAGGAATACATGTATTGTTCTCTATCCCGTCTAAAAGGTTATAGTCCGCTGTCCAAGCCGTTACTCTGCGGGTTCTACCGATTGATGTACAAGTGTAAGAATAAGAAGTGCGTACTGTACAAAGCGCCTTGCGGAAGAACCTTACGTAACATGCAAGAGGTGCATATGTACTTGAGGACCACCAAATCGGATTTAACGGTGGACCTCTTCGATTTCAACGTCTACGTACGATGTCTGGCCGAGTTCATGGTCGAGCAGAAGAATATTCTTATAAAAGATCTCTCACAAGGAAAGGAAGAGTGCCCAATTACAGTTGTTAATTATGTCAATTCCGCGCAGTTGAATTTCTGTAATTATTCCACAAAGAGGGAGCCGATGGAGCAGGTTAATCTCAATACGAATACCGAGTTCCTAACTGGGTGTGATTGCACTGATGATTGTATTgatagaCAGAAGTGTTCATGTTGGCAATTAACTTTGCAATGTCTAAAATATATGGATAAGGATACCGATCCCGAGTCAGTAGGGTACCAATACAGGAGATTGCCAGAACCCATATTTTCAGGAATATATGAATGTAATAGGAAGTGCAAATGCGCATCCACATGCTTGAATAGAGTCGTCCAAAATCCACTCCACCACAAGCTTCAAATATTCCAAACCGACATGAAAGGTTGGGGAATCCGCTGCTTAAACGACATCCCACAAGGTTCTTTCATTTGCATCTACGCGGGAGTCCTATTAACAGAAGATATGGCAAACAGGgaCGGCAAATTCTACGGAGATGAGTACTTAGCAGAGCTAGACTTTATAGAAACCGCCGAAAGGACTAAAGAAGATTACGAAGAGGACCCGTATCACGACGAGGTGGAAAGGGACTCGAAGTCGCCGCATAGGTCTCCGGAAGATAGCGGACCGGACGATGATGAGGAAGATGACCATATCGGACGTACTGCGGATGATAGGGATTTCATTCCGAGTTTTCAGGCGAAGAAACATAGCGAACACGATAGTGGGATCAGGACGAGGTTGAGGAAACGGCAGGAAGCCGTGACCATTAAGCAAGAAAAGAGAGCTGTTATTCCTTCGAATATGACGGATGATGATACTGTTATGATTAGCGATGATGAGGATTATGTCCCCAGGGAGCCTTCCAGCTTCAATCCCAAACAAGATTCCAGTCTAACCGAAGGGGGTGAAGGAAAGTACAAATCAGTAAGAGAATTGTTCGGCACAGACGAGGATGTTTACATTATGGACGCTAAAAACACCGGAAACATCGGCAGGTTCCTGAATCACTCGTGTTCGCCGAACATTTTCGTGCAAAACGTTTTCGTCGATACTCACGACTTACGTTTCCCGTGGGTTGCCTTCTTCACTCTGAGTTACGTCAGGGCCGGTACCGAACTTACTTGGAACTACAATTACGATATCGGCAGTGTCCCCGGAAAGGAGCTATCTTGTTATTGTGGTTCGAGTGAGTGCAAAGGTCGCTTGTTGTAA
- Protein Sequence
- MEEPMDVEIIDDDTPPNEPAKESDISKTADTTSNNEVVVLDDEISPECETIDLVHSEMTGNTKCINYACKGGDMMIEPPGFCLSFYRVKNKPNKKQQICTDCYDNAIEHYDKLAEALMTKGSLLDVELPFRNDVVEIEDSDSDEESTDDVHLDSETVQMLEEHFDSAMSAVMNKYDFDEQINKALNALNTRCDAVKDSFVEVKSMFKNIRSETDNMIFQLSDMLRPDNVELLPLDITNNKAQVVRNQPVRRTKAGSSVTPPASPRPLVFQKTPTRAVQSTSTTATMSTAKGSGPISKTQTPKTPVLPKSSILPKGPVQPKTPILSKTPVVPKPPALSRVVPPLTMMKATTASVVSNTITPDTDSNLIVLQEVKKDSSGFDAQSSFTGDPDAPPGNLPSRGQLIKPPLIVGETYYANRSEIIGAWIKVTLKEIIVPGTRRDGQIYTNTMYVVAIENRQKIIRQKIVTGREIAYSVPANVQLDVGARVIAVFREVLLPEEARDRIKKDVFYPGIVAEPLQSSNKYRYLIFFDDGYAQYVNFSLVHPIYEASKDVWEDVNINSRGFIKKYLEKYPERPMVKLHKDQTIRTEYNGKWWITTVMSVDCSLVQMFFDASGRIEWIYRGSTRLNPMFKEEQAASNRLQHRQRMTRKANTTEPYVEYTRSDPQQPEQPPPQRSVARKSTSRPPSNNNNITYRVNHFLPIATPREAPATKIVYYTPRRQKPKTNVYTPHSCASKCKEYMYCSLSRLKGYSPLSKPLLCGFYRLMYKCKNKKCVLYKAPCGRTLRNMQEVHMYLRTTKSDLTVDLFDFNVYVRCLAEFMVEQKNILIKDLSQGKEECPITVVNYVNSAQLNFCNYSTKREPMEQVNLNTNTEFLTGCDCTDDCIDRQKCSCWQLTLQCLKYMDKDTDPESVGYQYRRLPEPIFSGIYECNRKCKCASTCLNRVVQNPLHHKLQIFQTDMKGWGIRCLNDIPQGSFICIYAGVLLTEDMANRDGKFYGDEYLAELDFIETAERTKEDYEEDPYHDEVERDSKSPHRSPEDSGPDDDEEDDHIGRTADDRDFIPSFQAKKHSEHDSGIRTRLRKRQEAVTIKQEKRAVIPSNMTDDDTVMISDDEDYVPREPSSFNPKQDSSLTEGGEGKYKSVRELFGTDEDVYIMDAKNTGNIGRFLNHSCSPNIFVQNVFVDTHDLRFPWVAFFTLSYVRAGTELTWNYNYDIGSVPGKELSCYCGSSECKGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01498889;
- 90% Identity
- iTF_00956312;
- 80% Identity
- -