Pjap005532.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- egg
- Assembly
- GCA_004785975.1
- Location
- SMLS01064145.1:31678-37863[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5 1.6e+04 -3.6 0.0 17 35 451 469 451 469 0.85 2 3 0.16 1.7e+03 -0.5 0.1 30 42 670 682 636 686 0.82 3 3 1.6e-15 1.7e-11 44.3 0.1 5 75 712 775 709 777 0.90
Sequence Information
- Coding Sequence
- ATGGATGAACCGATGGACGTACAAATTATCGAGGATGATACACCGCCGGATAAGCCAGCAAAACAAACAGAAACCCCCACAGTAGCAGCCAAATCATCTACTAGCGATATAGTCATTTTAGACGACGATGTTGTCGCAGaatgTGAAACCATAGATTTAGTTCGAGCAGAAATGACGGGTAACACAAAATGTATTAATTACGCCTGTAAAGGCGGCACATCAATGATAGAACCGCCCGGATTCTGCCTCAGCTTCTACAGAGTTAAGAACAAACCTAATAAAAAGCAGCAAATATGCACGGACTGCTACGAGAACGCTGTACAACATTACGATAAGTTAGCCGAGGCTTTATCGCTAAAAGAACCCTTATTCAATGTTGAGATACCCTTCAGAAATGATGTGGTGGAAATCGATGACTCAGATTCTGATGATGAAAAGATAGAGGATGTGCATCTTGATAGCGATACCGTAGATATGTTAGAGGAACATTTCGATAGCGCGATGAGTAGTGTTCTGAATaaatacgattttgaagatcaaATTGAGAAAGCCCTACTCGCtttgaataaaaaatgtgataCGATTAACGATTCATTTCTTGAGgttaaaactatgtttaaaaGCATCCGATCTGAAACCGATGAAATGATCTTCCAATTATCCGATATTCTCCGACCGGATAACGTGGAACTCCTCGCATTGGACATAACACACAAGAAGACGTCAATTATTAAGAACACACCGAATAGACGGCAGTCAAATGCTTCTCCCAGAGTATTTCCATCTACTCCGAATAAATCGGTACAATCCACATCTGCTAGCCCGTCACAGATTCATGGGAAACCTCAATTACCTAAAACTCCGGTAATACCTGTGAGACCTCCTGCGTTAGCCGCAAAAATTGTAGCTCCGACCTCTGAGCTGCCGAAAGTGCCAGCTCTAACTCCGATTCCACTGACTGGGAACGATTCGAATCTTATCATGTTGCAAGAATCGGATAATGATCCTACAGCTTTAGATACTCATTCGATCATGACGGATGATCCGAATGCACCTCCACCTAATCTACCACCTCGTTGGCCATTATCGAAGCCGTCTCTAGTCGTAGGTGAAACTTATTATGCCAACCGATCTGAGATAATTGGAGCTTGGGTGAAAGTTACGCTAAAGGAGATAATCGTGCCGGGGACGCGCCGGGACGGCCAGATATATACTAGCACAATGTACATGGTCGCTATCGAGAACAAGCAGAAGACGATCAGACAGAAAATCGTCACTGGGAGGGAGATAGCGTATTCGCAACCGGCGAACGTTCAGTTAGATGTGGGTGCTCGCGTTATTGCGGTGTTTCGTGAAACTCTCACGCCGGAAGAAGCTAGGGAGAGGATCAAGAAGGATGTGTTTTACCCTGGGATTGTCGCCGAACCGTTGCAGGCCTCGAATAAGTACAGGTATTTAATCTTCTTCGATGACGGCTACGCCCAATACGTCGATTTCAATCTGGTGCATCCGATTTACGAGGCGAGTAAGGATGTGTGGGAGGATGTCAATGTTAACTCTAGAAGTTTCATCAAGAAATATTTGGAGAAGTACCCGGAGAGACCTATGGTGAAGTTGCACAAAGATCAAACGATTCGAACGGAATTTAATGGGAAATGGTGGGTTACAACAGTGATGAGCGTGGACTGCTCGCTGGTGCAGATGTTCTTCGATGCTTCGGGGAGGGTGGAATGGATCTATAGAGGATCGACGCGATTGAATCCAATGTTTAAGGAGGAGCAAGCCGCTAGTAATAGGTTGCAGTACCGTCAACGGATGACTAGGAAGGCGAATACTTCAGAGCCGTACGTCGAATATACCCGCCCTAACAATGCGGAGCAGGTGGAACAGCCCTCACCTCCACAGAGATCTGTCGCTAGGAAGAGCACTTCGAGGCCTCCTTCGTCGAAAAACAATATCACCTACAGGGTGCATCAATTTCTGCCGACTCCCGCCCGCGAAGCTCCAGCCACGAAGATTGTTtattatACTCCGAGGCGGCAAAAGCCGAAAACCAACGTTTACACCCCCCACACCTGCGGACCAAAATGCAAGGAATTCATGTACTGCTCCCTATCACGGCTTAAAGGTTATAGCCCACTATCGAAGCCTCTCCTCTGCGGATTCTACAGGCTGATGTATAAGTGCAAGAACAAGAAGCTAGTCCTGTATAAAGCGCCCTGCGGACGGACTTTGCGGACAATGCAGGAGGTGCACACTTATTTGAGGATAACCAAGTCGAACTTGACGGTGGATCTGTTCGATTTCAACATGTACGTTCGCTGTTTAGCCGAATTTATGGTCGAGCAGAAGAATGTTTTAATTAAGGATTTATCGCAAGGTAAAGAGGAATGTCCGATCACCGTGGTTAATTACGTGAATCTAGCCCAATTGAATTTCTGCAATTATTCGACGCGGAGGGAACCGATGGAGGGGGTCAATCTCAATACTAATACCGAATTCTTAACGGGGTGCGATTGCACCGATGATTGCatcGATAGGAAGAAGTGTTCGTGTTGGCAATTGACGTTGCAATGCTTGAAGTATATGGATAAGGATACCGACCCGGATACGGTGGGGTATCAGTATAGGAGATTGCCCGAGCCGATATTTACGGGGATATACGAGTGCAATAAGAAgtGCAAGTGTGCAGCGACCTGTTTAAACAGAGTCGTCCAGAACCCGCTCCACCACAAACTGCAAATCTTCCAAACTGACATGAAAGGGTGGGGAATCCGCTGTCTGAACGACATCCCTCAAGGATCATTCATATGCATCTACGCCGGGGTGTTATTAACTGAAGATATGGCGAATCGAGATGGTAAATTTTACGGGGATGAATATCTAGCCGAGTTAGACTTTATAGAAACTGCCGAGAGGACCAAAGAGGATTACGAAGAAGATCCCTACCACGAAGAAGTGGAGAAAGATTCAAAAACGCCGGAAAGGTCTCCGGAGGAGAGCGGACCCGACGAAGACGACGAGGAGGACGTTGTTACCAACACCGCGGATGATAGGGATTTCGTGCCGATGAATTTCCAAGCCAGGAAACCAGCGGGGGAAGATAGCGGGATCCGGACTAGATTGAGGAAACGCCAGCCGGAGAAGGTCGTTGTTAAGCAAGAGAAGAAGATTACAATTACAGCTAAACCAACCGACGATAATGATACTGTTATGATCAGCGACGATGAGGATTACGCGCCAAGAGAGCCGTCCAGTTTTAATCCGAAACAAGATTCTAGCTTATCGGAAGACGAACGAAAGTATAAATCCGTTAGGGAATTATTCGGTACAGCCGAGGACGTTTATATTATGGACGCGAAGAATACCGGGAATATAGGTAGATTCCTGAATCACTCTTGTTCGCCCAACATCTTCGTTCAAAATGTGTTCGTCGATACGCACGATCTGCGCTTCCCGTGGGTGGCTTTCTTCACTCTAAGTTACGTCAGAGCCGGCACGGAATTAACGTGGAATTACAATTACGATATTGGCAGCGTTCCCGATAAAGAATTGTCGTGTTATTGCGGATCTAGTGAGTGTAAAGGGCgattgttgtaa
- Protein Sequence
- MDEPMDVQIIEDDTPPDKPAKQTETPTVAAKSSTSDIVILDDDVVAECETIDLVRAEMTGNTKCINYACKGGTSMIEPPGFCLSFYRVKNKPNKKQQICTDCYENAVQHYDKLAEALSLKEPLFNVEIPFRNDVVEIDDSDSDDEKIEDVHLDSDTVDMLEEHFDSAMSSVLNKYDFEDQIEKALLALNKKCDTINDSFLEVKTMFKSIRSETDEMIFQLSDILRPDNVELLALDITHKKTSIIKNTPNRRQSNASPRVFPSTPNKSVQSTSASPSQIHGKPQLPKTPVIPVRPPALAAKIVAPTSELPKVPALTPIPLTGNDSNLIMLQESDNDPTALDTHSIMTDDPNAPPPNLPPRWPLSKPSLVVGETYYANRSEIIGAWVKVTLKEIIVPGTRRDGQIYTSTMYMVAIENKQKTIRQKIVTGREIAYSQPANVQLDVGARVIAVFRETLTPEEARERIKKDVFYPGIVAEPLQASNKYRYLIFFDDGYAQYVDFNLVHPIYEASKDVWEDVNVNSRSFIKKYLEKYPERPMVKLHKDQTIRTEFNGKWWVTTVMSVDCSLVQMFFDASGRVEWIYRGSTRLNPMFKEEQAASNRLQYRQRMTRKANTSEPYVEYTRPNNAEQVEQPSPPQRSVARKSTSRPPSSKNNITYRVHQFLPTPAREAPATKIVYYTPRRQKPKTNVYTPHTCGPKCKEFMYCSLSRLKGYSPLSKPLLCGFYRLMYKCKNKKLVLYKAPCGRTLRTMQEVHTYLRITKSNLTVDLFDFNMYVRCLAEFMVEQKNVLIKDLSQGKEECPITVVNYVNLAQLNFCNYSTRREPMEGVNLNTNTEFLTGCDCTDDCIDRKKCSCWQLTLQCLKYMDKDTDPDTVGYQYRRLPEPIFTGIYECNKKCKCAATCLNRVVQNPLHHKLQIFQTDMKGWGIRCLNDIPQGSFICIYAGVLLTEDMANRDGKFYGDEYLAELDFIETAERTKEDYEEDPYHEEVEKDSKTPERSPEESGPDEDDEEDVVTNTADDRDFVPMNFQARKPAGEDSGIRTRLRKRQPEKVVVKQEKKITITAKPTDDNDTVMISDDEDYAPREPSSFNPKQDSSLSEDERKYKSVRELFGTAEDVYIMDAKNTGNIGRFLNHSCSPNIFVQNVFVDTHDLRFPWVAFFTLSYVRAGTELTWNYNYDIGSVPDKELSCYCGSSECKGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01498889;
- 90% Identity
- -
- 80% Identity
- -