Tsep000719.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex septentrionalis
Gene Symbol
-
Assembly
GCA_001594115.1
Location
NW:3906251-3912107[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.02 1.3 9.0 1.9 2 23 407 428 406 428 0.94
2 14 0.0017 0.11 12.3 2.4 2 23 437 459 436 459 0.91
3 14 0.00013 0.0082 15.8 0.3 2 23 466 487 465 487 0.96
4 14 3.6e-06 0.00023 20.7 2.6 1 23 493 515 493 515 0.96
5 14 9e-05 0.0057 16.3 4.2 1 23 524 546 524 546 0.97
6 14 3e-05 0.0019 17.8 3.2 1 23 552 574 552 574 0.97
7 14 4.3e-05 0.0027 17.4 0.9 1 23 579 601 579 601 0.98
8 14 0.0056 0.35 10.7 1.2 1 23 608 630 608 630 0.97
9 14 0.00072 0.045 13.5 0.3 2 23 650 671 649 671 0.96
10 14 2.5e-05 0.0016 18.1 0.8 1 23 677 700 677 700 0.97
11 14 0.0027 0.17 11.7 2.0 1 23 706 728 706 728 0.96
12 14 2e-06 0.00013 21.5 1.3 1 23 734 756 734 756 0.98
13 14 3.5e-06 0.00022 20.7 3.5 1 23 762 784 762 784 0.98
14 14 1.5e-06 9.6e-05 21.9 1.0 1 22 790 811 790 811 0.96

Sequence Information

Coding Sequence
ATGAGAATTGTTTGCGCTGcgttaaattgcaaatattccTCAGAAAACAAGGATTCTTCGAGTGTcacttttatcaattttccCAACAATGACACagcCAAAGTATGGGCAGAATGTTGTGGCAGATCGGATTTAGCTACAAAATCGAATGCAGAATTGCATttgaattattacatttgttcTCGTCACATTGAAGATCGCTGTTATATAAGCAAAACTATTCCCATTGTTGTAGAAGAAGGGACCATTCCCACTTTATTTGAGACTGACTTGACTACTGACGATGAAGACTCAATGAATATGTTTCATAAGGCACAGCATCTCCAAGAAATAGGTGACAATGTGCCTTTAACATATTGCGATATGAATGTTGAAATAGACGAATATCATAATATCTCTGTCAAATTTGCCAATTTATGTCGAATCTGTGGAATATCCGCTTTGGATGGAATAGATATCTTTGCAACCAAGGGTATAgaacttaaattaaaagaaagaataaatttacatatgccTATCTCGATTGACATAAATGATTCATTACCACGGAAAGTATGTACCGATTGCTGTAATAAATTGGAAGTTGCACATTCACTAGTTGTCTCATGTCTTAAAACTGACATGCGcttaaaacaatttctaaatattgacAGAGAGcCAGAATATGAAAATAAGTACAATTCATTGATTGACGAATGTTCCTTAGAGATAGTCCAAGAAATGTGTATCCAAGAAATGGACGATAATTTGCATCCTAATtcatttactataaataaaatgataaactCTGATTCAGAAAGTTTAAGAGAATTAGAAAATGGAGAATGTACTGAAATACAGAATAATGATTTTCAAagcatttcaaaaaatgtgcCGTTAGAACTAAATACTCTAATCCAAACTTGTAGAGAAGTTAACAGTAAAAGTAATGCAAGTGAGACTATCAGAgaagagatattaaatttgcaaCAAGATAAGACCAAAAATGGAAGTCTTAATGTTATATGTCTACAGTGCCAAACTTTCTGTGAAACACaggaaatatttgaaaatcataaaatagttTGTAATAAGACACAAGATATCTCTGAACATGTAGATATGTGTAAAACTCCAGAAAACGGAAATCAGCAACTtaatcatgaaataaaaaatttccagGCAcgcaaaaaaacatttgatgATAAGCAAGTTACTGATAAAAACTGCGAATCAGTGTATTGTACTGTTTGCAACCAAGCGTTTAAATATCAGCAGGATTATGATAATCATAAACATCTTCATGTAAATCTTActgaaatgaataaaagatgTGGTCATTGTGAAAAAGTATatcataacaaaaaaaatttgttaatacatATTGTGGAATCGCACGAGGGACGATTATTATTGAAGTGCTCTACATGCGATAAAACATATGAGAAGTGGTCTAGTTTAGATATTCACGAAGCTACTCACAGAATAGATAAACCCTATCTTTGCGATCTGTGTGGAAAAAGTTTTAAGCATTCCAATAATTTAAGGGGTCATAAAAGAATTCATTTGGACGAAGCTATAAAGAAAAGACATGTGTGTGAGACCTGTGGCAATATGTTTAGATCACgATTTCATTTGCAAGAACATATGAATCAGCACGATGATAACAGACCCTATTGTTGTGAACAATGCGGCAAAgctttttacaaaagaattcAGTTGCGACAGCACCAATTATCGCATGGCTCTAATAGGCATACATGTTTGATTTGCGGTGCAATGTTTAATCGTAGAGGGAACATGATCGCACACACGAAACGGCATAATAACGATAATGGAGGATATAGATGTAgtgtTTGTGCCTACAAATCTAAATCTATGAGCGAATTAAAGATACACAGGAAAGACCATACCGAGGAGGAAATAGTGGACAGCATTAAGAAGAGATGTACCGATAAGGACATATGGCGTTGtaacatttgtaataaaatattctcaaagCGCGCCATCTTGTTAAATCACGAGCGCATACATGGAGACGATAAGTTTTACGAATGTGATGAATGCGGCAAGAAATTAGCAAGTAAAAGCTCgttaatatatcataagaaGTCGAAACATTTGAGAGAGAGGCCGCATATGTGTCATTATTGCGGAAATTCGTTCGTTTCGAGAGAGGCACGGCTGATTCATGAAAGGATACATACCGGTGAACGCCCTTACATTTGCAAGGTGTGCAATACGCAGTACAGATCTTCCAGTAATCTTAGCCAGCACATGAAGATCCACACGGGTCTGAAGCCGCATAAGTGCCATTTTTGCGACAAAGGTTTTACGCGTAAAGCCGCGCTAACCGTACACGAGAGAATCCACACGGGTGTTAAGCCTTATTCTTGCGAGACCTGTGGTAAAAGCTTCTCACAGAAGAATGACATGTTAAAGCATATGAAACGCACAACTGCAGATGGATGCAGCGCGGTTATTGTAACTAAATCattaaacgaaaataaaaatatgttaaagcACACTGTGATGCACGAGCAAGACTCCTTAGTAATTTCGAATATCAATGCATGA
Protein Sequence
MRIVCAALNCKYSSENKDSSSVTFINFPNNDTAKVWAECCGRSDLATKSNAELHLNYYICSRHIEDRCYISKTIPIVVEEGTIPTLFETDLTTDDEDSMNMFHKAQHLQEIGDNVPLTYCDMNVEIDEYHNISVKFANLCRICGISALDGIDIFATKGIELKLKERINLHMPISIDINDSLPRKVCTDCCNKLEVAHSLVVSCLKTDMRLKQFLNIDREPEYENKYNSLIDECSLEIVQEMCIQEMDDNLHPNSFTINKMINSDSESLRELENGECTEIQNNDFQSISKNVPLELNTLIQTCREVNSKSNASETIREEILNLQQDKTKNGSLNVICLQCQTFCETQEIFENHKIVCNKTQDISEHVDMCKTPENGNQQLNHEIKNFQARKKTFDDKQVTDKNCESVYCTVCNQAFKYQQDYDNHKHLHVNLTEMNKRCGHCEKVYHNKKNLLIHIVESHEGRLLLKCSTCDKTYEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDEAIKKRHVCETCGNMFRSRFHLQEHMNQHDDNRPYCCEQCGKAFYKRIQLRQHQLSHGSNRHTCLICGAMFNRRGNMIAHTKRHNNDNGGYRCSVCAYKSKSMSELKIHRKDHTEEEIVDSIKKRCTDKDIWRCNICNKIFSKRAILLNHERIHGDDKFYECDECGKKLASKSSLIYHKKSKHLRERPHMCHYCGNSFVSREARLIHERIHTGERPYICKVCNTQYRSSSNLSQHMKIHTGLKPHKCHFCDKGFTRKAALTVHERIHTGVKPYSCETCGKSFSQKNDMLKHMKRTTADGCSAVIVTKSLNENKNMLKHTVMHEQDSLVISNINA