Acep005723.1
Basic Information
- Insect
- Atta cephalotes
- Gene Symbol
- -
- Assembly
- GCA_000143395.2
- Location
- NW:1052127-1055162[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1 63 3.6 2.4 5 23 408 426 400 426 0.85 2 14 0.00058 0.033 13.8 2.8 2 23 435 457 434 457 0.95 3 14 1.2e-05 0.00068 19.2 0.3 1 23 463 485 463 485 0.98 4 14 3.8e-06 0.00022 20.7 2.6 1 23 491 513 491 513 0.96 5 14 1.6e-05 0.00094 18.7 2.9 1 23 522 544 522 544 0.97 6 14 0.00016 0.0092 15.6 3.6 1 23 550 572 550 572 0.97 7 14 9.1e-07 5.2e-05 22.7 1.1 1 23 577 599 577 599 0.98 8 14 0.0046 0.27 11.0 3.7 1 23 606 628 606 628 0.98 9 14 0.00071 0.041 13.6 0.3 2 23 648 669 647 669 0.96 10 14 3.4e-05 0.0019 17.7 0.9 1 23 675 698 675 698 0.97 11 14 0.0028 0.16 11.7 2.0 1 23 704 726 704 726 0.96 12 14 0.0013 0.074 12.8 3.4 1 23 732 754 732 754 0.98 13 14 3.7e-06 0.00022 20.7 3.6 1 23 760 782 760 782 0.98 14 14 3.2e-06 0.00018 21.0 0.8 1 22 788 809 788 809 0.96
Sequence Information
- Coding Sequence
- ATGAGAATTGTTTGCGCTGCgttaaattgcaaatattccTCAGAAAACGAGGATTCCTCGAATGTcacttttatcaattttccCAACAATGACACagcCAAAGTATGGGCAGAATGTTGTGGCAGATCGGATTTAGCTACAAAATCGAATGCGGAATTGcatttgaattattacatttgttcTCATCACATTGAAGATCGCTGTTATATAAGCAAAACTATTCCCATTGTTGTAGAAGAAGGGACCATTCCCACTTTATTTGCGACTGACTTGACTACTGACGATGaagattcaataaatatatttcataaggCACAGCATCTCCAAGAAATAGGTGATAATGTGCCTTTAACATATTGTGATATGAATGTCGAGATAGACGAGtatcataatatttctgtCAAATTTGCCAATTTATGTCGAATCTGTGGAATATCTACTTTAGATGGAATAGATATCTTTGCAACTAAGGGCATAgaacttaaattaaaagatagaataaatttacatatgccTATCTCGATTAACATAAACGATTCATTACCACGGAAAGTATGTACCGATTGCTGTAATAAATTGGAAGTTGCTCATTCACTAGTTGTTTCATGTCTTAGAACTGATATACGCTTAAaacaatttctaaatattgacAGAGAGCCGGAATACGAAAATAAGTACAATGCATTGATTGACGAATGTTCCTTAGAGATAGTCCAAGAAATGTGTATGGATGATAATTTGCATCCTAATtcatttactataaataaaataataaactctgATTCAGAAAGTTTAAGAGAATTAGAAAATGGAGAATGTACTGaaatacagaataataattttcaaagcatttcgaaaaatattgtgCCGTTAGAATTAAATACTCTAATCCAAACTTGTAGAGAAGTTAACAGTAAAAGTAATGCAAGTGAGACTATCACAGAAGAGATATTAAACTTGCAACAAGATAAGATCCAAAATGGAAGTCTTAGCGTTATATGTCTACAGTGCCAAACTTTCTGTGAAACACaggaaatatttgaaaatcataaaatagttTGTAATAAGATACAAGATATTTCTGAACATGTAGATATGTGTAAAACTGCAGAAAACGGAAATCAGCAACTTAAtcatgaaatagaaaattttcagacatgcaaaaaaacatttgatggTAAGCAAGTTACTGATAAAAATTGCGAATCAATGCATTGTATTGTTTGCAACCAAGCGTTTAAAAGTCAGCAGGATTATGATAATCACAAATATCTTCATGAAAACCTTActgaaatgaataaaagatgTGGTCATTGTGAAAAAGTGTATcataacaaaaaaaacttgttaatacatattatggaATTACACGAgggacaattattatttaagtgcTCTATATGCGATAAAACATATGAGAAGTGGTCTAGTTTAGATATTCACGAAGCTACTCACAGAGTAGATAAACCCTATCTTTGCGATCTGTGTGGAAAAAGTTTTAAGCATTCCAATAATTTAAGGGGCcataaaagaattcatttgGACGAAACTATAAAGAAAAGACACGTGTGTGAGATCTGTGGCAATGCGTTTAGATCAcgATTTCATTTGCGAGAACATATGAATCAGCATGATGATAACAGACCCTATTGTTGTGAACAATGCGGCAAAGCTTTTTATAAAAGGATTCAATTGCGACAACACAAATTATCACATGGCTCTAATAGGCATACATGTTCGATTTGCGGTGCAACGTTTAATCGTAGAGGGAACATGATCGCACACATGAAACGGCATAATAACGATAATGGAGGATATAGATGTAgtgttTGTGCCTACAAATGTAAATCTATGAGCGAATTAAAGATACACAGGAAAAATCATTCCGAGGAGGAAATAGTGGACagcattaagaaaaaatgtactgATAAGGACATATGGCGTTGtaacatttgtaataaaatattctcaaagCGCGCCATCTTGTTAAATCACGAGCGTGTACATGGAGACGATAAGTTTTATGAATGTGATGAATGCGGCAAGAAATTAGCAAGTAAAAGTTCGTTAATGTATCATAAGAATTCGAAGCATTTGAGAGAAAAACCGCATATGTGTCATTATTGCGGAAATTCGTTCGTTTCGAGAGAGGCGCGGCTGATTCATGAAAGGATACATACCGGTGAACGCCCTTACATTTGCAAGGTGTGCAATACGCAGTACAGATGTTCCAGTAATCTTAGCCAGCACATGAAGATCCACACGGGTCTGAAACCGCATAAGTGCCATTTTTGCGACAAAGGTTTTACGCGTAAAGGCGCGCTAACTGTACACGAGAGAATCCACATGGGTGTTAAGCCTTATTCTTGCGAGACCTGTGGTAAAAGTTTCTCACAGAAGAATGATATGTTAAAGCATATCAAACGCACAACTGCAACAGATGGATGCAACGCGGTTATTGTAACTAAATCattaaacgaaaataaaaatatgttaaagcACACTGTGATGCATGAGCAAGACTCCTTAGTAATTTCGAATATCAATGCATGA
- Protein Sequence
- MRIVCAALNCKYSSENEDSSNVTFINFPNNDTAKVWAECCGRSDLATKSNAELHLNYYICSHHIEDRCYISKTIPIVVEEGTIPTLFATDLTTDDEDSINIFHKAQHLQEIGDNVPLTYCDMNVEIDEYHNISVKFANLCRICGISTLDGIDIFATKGIELKLKDRINLHMPISININDSLPRKVCTDCCNKLEVAHSLVVSCLRTDIRLKQFLNIDREPEYENKYNALIDECSLEIVQEMCMDDNLHPNSFTINKIINSDSESLRELENGECTEIQNNNFQSISKNIVPLELNTLIQTCREVNSKSNASETITEEILNLQQDKIQNGSLSVICLQCQTFCETQEIFENHKIVCNKIQDISEHVDMCKTAENGNQQLNHEIENFQTCKKTFDGKQVTDKNCESMHCIVCNQAFKSQQDYDNHKYLHENLTEMNKRCGHCEKVYHNKKNLLIHIMELHEGQLLFKCSICDKTYEKWSSLDIHEATHRVDKPYLCDLCGKSFKHSNNLRGHKRIHLDETIKKRHVCEICGNAFRSRFHLREHMNQHDDNRPYCCEQCGKAFYKRIQLRQHKLSHGSNRHTCSICGATFNRRGNMIAHMKRHNNDNGGYRCSVCAYKCKSMSELKIHRKNHSEEEIVDSIKKKCTDKDIWRCNICNKIFSKRAILLNHERVHGDDKFYECDECGKKLASKSSLMYHKNSKHLREKPHMCHYCGNSFVSREARLIHERIHTGERPYICKVCNTQYRCSSNLSQHMKIHTGLKPHKCHFCDKGFTRKGALTVHERIHMGVKPYSCETCGKSFSQKNDMLKHIKRTTATDGCNAVIVTKSLNENKNMLKHTVMHEQDSLVISNINA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01477082;
- 90% Identity
- iTF_00182779;
- 80% Identity
- -