Tcor010473.1
Basic Information
- Insect
- Trachymyrmex cornetzi
- Gene Symbol
- -
- Assembly
- GCA_001594075.1
- Location
- NW:1304186-1308113[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.7e-05 0.0025 17.6 1.7 2 23 433 455 432 455 0.95 2 13 0.0001 0.0071 16.2 0.7 1 23 461 483 461 483 0.98 3 13 3.7e-06 0.00026 20.7 2.6 1 23 489 511 489 511 0.96 4 13 1.6e-05 0.0011 18.7 2.9 1 23 520 542 520 542 0.97 5 13 0.00016 0.011 15.6 3.6 1 23 548 570 548 570 0.97 6 13 2.1e-06 0.00014 21.5 1.3 1 23 575 597 575 597 0.98 7 13 0.0021 0.14 12.1 4.8 1 23 604 626 604 626 0.98 8 13 7.5e-05 0.0052 16.6 0.3 2 23 646 667 645 667 0.97 9 13 2.9e-05 0.002 17.9 1.1 1 23 673 696 673 696 0.97 10 13 0.0028 0.19 11.7 2.0 1 23 702 724 702 724 0.96 11 13 0.0013 0.087 12.8 3.4 1 23 730 752 730 752 0.98 12 13 4.3e-06 0.0003 20.5 3.6 1 23 758 780 758 780 0.98 13 13 1.1e-05 0.00075 19.3 0.6 1 21 786 806 786 807 0.94
Sequence Information
- Coding Sequence
- ATGAGAATTGTTTGCGCTGCGTTAAATTGCAAATATTCTTCAGAAAACGAGGATTCCTCGAGTGTCACTTTTATCAATTTTCCCAACAATGACACagcTAAAGTATGGGCAGAATGTTGCGGCAGATCGGATTTAgctacaaaatcaaatgcagaattgcatttaaattattacatttgttCTCATCACATTGAAGATCGCTGTTATATAAGCAAAACTATTCCCATTGTTGTAGAAGAAGGGACCATTCCCACTTTATTTGGGACTGACTTGACTACTGATGATGAAGACTCAATAAATATGTTTCATAAGGCACAGCAACTCCAAGAAATAGATGACAATATGCCTTTAACATATTGCGATATGAATGTCGAAATAGACGAGTATCATAATATCTCTGTCAAACTTGCCAATTTCTGTCGAATCTGTGGAACATCCACTTTGGATGGAATAGATATCTTTGCAACCAAGGGCATAGaacttaaattaaaagaaagaataaatttacatatgcCTATCTCGATTGACATAAACGATTCATTACCACGGAAAGTATGTACTGATTGCTGTAATAAATTGGAAGTTACACATTCATTAGTTGTCTCATGTCTTAGAACTGACATGCGCTTAAAACAATTTCTAAATATTGACAGAGAGccAGAATACGAAAATAAGTACAATGCATTGATTGACGAATGTTCCTTAGAGATAGTCCAAGAAATGTGTATGGATGATAATTTGCATCCTAATtcatttactataaataaaatgataaactCTGATGAAAGTTTACGAGAATTAGAAAATGGAGAATGTACTGAAATacagaataataattttcaaagcaTTTCGAAAAATGTGCCGTTAGAACTAAATACTCTAATCCAAACTTGTAGAGAAGTTAACAGTAAAAATAATGCAAGTGAGACTATCACAGAAGAGATATTAAATTTGCAACAAGATAAGATTCAAAATGGAAGTCTTAGTGTTATATGTCTACAGTGTCAAACTTTCTGTGAAACACaggaaatatttgaaaatcataaaatagtttGTAATAAGAAACAAGATATCTCTGAACATGTAGATATGTGTAAAACTGCAGAAAACGGAAATCAGCAACTTAAtcgtaaaatagaaaatttccAGACACGCAAAAAAACATTTGATGGTAAGCAAGTTACTGATACAAACAGCGGATCCGTGCATTGTACTGTTTGCAACCAAGCGTTTAAATGTCAGCAGGATTATGATAATCACAAACATCTTCatgaaaattttactgaaatgaataaaagatgtgGTCATTGTGAAAAAGTGTATCGTAACAAAAAAAACTTGTTAATACATATTATGGAATCGCACGAGGGACGATTATTATTTAAGTGCTTTACATGCGATAAAACATATGAGAAGTGGTCTAGTTTAGATATTCACGAAGCTACTCACAGAGTAGATAAACCCTATCTTTGCGATCTGTGTGGAAAAAGTTTTAAGCATTCCAATAATTTAAGGGGCCATAAAAGAATTCATTTGGATGAAGCTATAAAGAAAAGACATGTGTGTGAGATCTGTGGCAATGCGTTTAGATCACGATTTCATTTGCGAGAACATATGAATCAGCACGATGATAATAGACCCTATTGTTGTGAACAATGCGGCAAAGCTTTTTACAAAAGGATTCAATTGCGACAGCACAAATTATCACATGGCTCTAATAGGCATACATGTTCAATTTGCGATGCAACGTTTAATCGTAGAGGGAACATGATCGCACACATGAAACGGCATAATAACGATAATGGAGGATATAGATGTAGtGTTTGTACCTACAAATGTAAATCTATGAGCGAATTAAAGATACACAGGAAAAACCATACCGAGGAGGAAATAGTGGACAGCATTAAGAAGAAATGTACCGATAAGGAGATATGGCGttgtaacatttgtaataaaatattctcgaaGCGCGCCGTCTTGTTAAATCACGAGCGCGTACATGGAGACGATAAGTTTTATGAATGTGATGAATGCGGCAAGAAATTAGCAAGTAAAAGTTCGTTAATGTATCATAAGAAATCGAAGCATTTGAGAGAGAAGCCGCATATGTGTCATTATTGCGGAAATTCGTTCGTTTCGAGAGAGGCGCGGCTGATTCATGAAAGGATACATACCGGTGAACGCCCTTACATTTGCAAGGTGTGCAATACGCAGTACAGATGTTCCAGTAATCTTAGCCAGCACATGAAGATCCACACGGGTCTGAAGCCGCATAAGTGCCATTTTTGTGACAAAGGTTTTACGCGTAAAGGCGCGCTAACCATACACGAGAGAATCCACACGGGTGTTAAACCTTATTCTTGCGAGACCTGTGGTAAAAGCTTCTCACAGAAGAATGACATGTTAAGGCATGCCAAACGCACAACTGCAGATGGATGCAGCGCGGTTACTGTAACTAGatctttaaacaaaaataaaaatatgttaaagcACACTGTGATGCACGAGCAAGACTCCTTAGTAATTTCGAATATCAATGCATGA
- Protein Sequence
- MRIVCAALNCKYSSENEDSSSVTFINFPNNDTAKVWAECCGRSDLATKSNAELHLNYYICSHHIEDRCYISKTIPIVVEEGTIPTLFGTDLTTDDEDSINMFHKAQQLQEIDDNMPLTYCDMNVEIDEYHNISVKLANFCRICGTSTLDGIDIFATKGIELKLKERINLHMPISIDINDSLPRKVCTDCCNKLEVTHSLVVSCLRTDMRLKQFLNIDREPEYENKYNALIDECSLEIVQEMCMDDNLHPNSFTINKMINSDESLRELENGECTEIQNNNFQSISKNVPLELNTLIQTCREVNSKNNASETITEEILNLQQDKIQNGSLSVICLQCQTFCETQEIFENHKIVCNKKQDISEHVDMCKTAENGNQQLNRKIENFQTRKKTFDGKQVTDTNSGSVHCTVCNQAFKCQQDYDNHKHLHENFTEMNKRCGHCEKVYRNKKNLLIHIMESHEGRLLFKCFTCDKTYEKWSSLDIHEATHRVDKPYLCDLCGKSFKHSNNLRGHKRIHLDEAIKKRHVCEICGNAFRSRFHLREHMNQHDDNRPYCCEQCGKAFYKRIQLRQHKLSHGSNRHTCSICDATFNRRGNMIAHMKRHNNDNGGYRCSVCTYKCKSMSELKIHRKNHTEEEIVDSIKKKCTDKEIWRCNICNKIFSKRAVLLNHERVHGDDKFYECDECGKKLASKSSLMYHKKSKHLREKPHMCHYCGNSFVSREARLIHERIHTGERPYICKVCNTQYRCSSNLSQHMKIHTGLKPHKCHFCDKGFTRKGALTIHERIHTGVKPYSCETCGKSFSQKNDMLRHAKRTTADGCSAVTVTRSLNKNKNMLKHTVMHEQDSLVISNINA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01477082;
- 90% Identity
- iTF_00182779;
- 80% Identity
- -