Ccot008507.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cyphomyrmex costatus
Gene Symbol
-
Assembly
GCA_001594065.1
Location
NW:1914042-1917314[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 7.5 4.6e+02 1.0 3.5 3 19 399 415 397 419 0.79
2 14 0.0015 0.095 12.6 2.7 2 23 427 449 426 449 0.95
3 14 1.3e-05 0.00078 19.2 0.3 1 23 455 477 455 477 0.98
4 14 4.1e-06 0.00025 20.7 2.6 1 23 483 505 483 505 0.96
5 14 3.7e-05 0.0023 17.7 3.5 1 23 514 536 514 536 0.97
6 14 2.3e-05 0.0014 18.4 1.5 1 23 542 564 542 564 0.98
7 14 5.1e-06 0.00032 20.4 0.8 1 23 569 591 569 591 0.98
8 14 0.0025 0.16 12.0 4.3 1 23 598 620 598 620 0.99
9 14 0.00076 0.047 13.6 0.3 2 23 640 661 639 661 0.96
10 14 0.00015 0.0091 15.8 1.1 1 23 667 690 667 690 0.97
11 14 0.002 0.12 12.3 2.1 1 23 696 718 696 718 0.96
12 14 0.0014 0.084 12.8 3.4 1 23 724 746 724 746 0.98
13 14 2.2e-05 0.0013 18.5 4.1 1 23 752 774 752 774 0.98
14 14 9.9e-06 0.00061 19.5 0.8 1 21 780 800 780 801 0.95

Sequence Information

Coding Sequence
ATGAGAATCGTTTGCGCTGCgttaaattgcaaatattccTCAGAAAATGAGGATTCGTCGAATGTcacttttatcaattttccCAACAATGATACagcCAAAGTATGGGCAGAATGTTGCGGCAGATCAGATTTAACTACAAAATCAAATGCAgaattgcatttaaattattacatttgttccCATCACATTGAAGATCGCTGTTATGTAAGCAAAACTATTCCCATTATTGTAGAAGAAGGTACCATTCCTACTTTATTTGGGACCGAATTGACTACTGATGATGAAGattcaataaatatgtttcatAAGGCACAGAATTTCCAAGAAATAAGTGACAGTGTGTCTTTAACATATTGCGATATGAATGTCGAGATAGATGAGTATCATAACGTCTCCATCAAATTTGCCAATTTATGTCGAATCTGTGGGACATCCACTTTGGATGGAATAGATATTTTTGCAACCAAGGGCATAGagcttaaattaaaagaaagaataaatttgcACATGCCTATTTCAATTGACATAAATGATTCATTGCCACAGAAAGTATGTACTGATTGCTGtaataaattgcaaattgcACATTTACTAGTTGTTTCGTGCCTGAGAACTGACATGCGcttaaaacaatttctaaatattgacAGAGAGCCAGAATACGAAAACAAGTACAATGCATTGATTGACGAATGTTCCTTAGAGATGGTTCAAGAAATGTGTATGGATGATAATTTGCATCCTAATtcatttactataaataaaattataaactctGATTCAGAAAATTTAAGAGAATTAGGAAATAGAGAATGTTCTGAAATACAGAATAATTTCCAAAGCATTTCGAAGGATGTTGTGCCATTAGAACTAAATACTCTGATCCAAACTTGTAGAGAAGTTGACAGTAAAAATGAAACTATCACAAAAGAGATATTAAACTTGCAACAAGATAAGATCCAAAATGGAAGTCTTAGTGTTATCTGTTTGCACTGCCAAACTTTCTGTGAAACACaggaaatatttgataatcataaaatagttTGTAATAAGGAACAAAATGAACATGTAGGTATGTGTAAAACTGTAGAAAACGGAAACGAGCAACTTAATCGTGAAATAGAAAATCCCCAAACATGCAAAACATTTGATGGTAAGCAAGTTATCAATAAAAACTGTGAATCAATGCATTGTACTGTTTGCAATCAAACATTTAAATGTCAGCAGGATTATGATAATCATAAACATCTTAGAAATCTCACTGAAACGAATAAAAGATGTGGTCATTGTGAAAAAGTATATCATAACAAGAAAGACTTGTTAATTCATATCATGGAGTCACACGAGAgacgattattatttaaatgctcTATATGTGATAAAACTTACGAGAAGTGGTCTAGTTTAGACATTCACGAAGCTACTCACAGAGTAGACAAGCCTTATCTTTGTGATCTGTGTGGAAAAAGTTTTAAGCACTCCAATAATTTAAGGGGTCACAAAAGAATTCATTTGGACGAAACTATAAAGAAAAGACACATGTGTGACATCTGTGGCAATGCATTTAGATCACGATTTCATTTGCGAGAACATATGAATCAACACGATGATAACAGACCCTATTCTTGTGAACAATGTGGCAAAGCTTTTTACAAAAGGATTCAATTGCGACAGCACAAATTATCGCATGGTTCTAATAGGCATACATGTCCGATTTGCAGTGCAATGTTTAATCGTAGAGGAAATATGATCGCACACATGAAACGACACAGTAACGATAACGGAGGATATAAATGCAGtGTTTGTGCCTACAAATGTAAATCTATGAGCGAATTAAAGATACACAGGAAAAAACATACCGAGGAGGAAATAGTTGACAGCATTAAGAAGAAATGTATCGATAAGGAGATATGGCGTTGTAACATTTGCAATAAGATATTCTCGAAGCGCGCCATCTTGTTGAATCATGAGCGCGTACACGaagatgataaattttatgaatgtgAGGAATGTGGTAAGAAATTAGCGAGTAAAAACTCATTAATGTATCACAAGAAATCGAAGCATTTGAGAGAGAAGCCACATATGTGTCATTATTGCGGAAATTCGTTCGTTTCGAAAGAGGCACGGTTGATCCATGAGAGGATACATACCGGTGAACGCCCTTACATTTGCAAGGTGTGCAATACGCAGTACAGATGCTCCAGTAATCTTAGCCAGCACATGAAGATCCACACGGGTCTGAAGCCGCATAAGTGCCATTTTTGCAGCAAAGGTTTTACGCGCAAAGGCGCGCTAACCGTACACGAGAGAATCCACACGGGTGTTAAGCCTTATTCTTGCGAGACCTGTGGTAAAAGCTTCTCACAGAAGAATGACATGTTAAAACACGTCAAACGCGCAACTGCAGATGGATGCTGCGCGGTTAGTGTAACCAGattaaacgaaaaagaaaatatgttaaagcATACTGCGATGCAAGAGTCCTTAGTAATTTCGAATAACAATGCATGA
Protein Sequence
MRIVCAALNCKYSSENEDSSNVTFINFPNNDTAKVWAECCGRSDLTTKSNAELHLNYYICSHHIEDRCYVSKTIPIIVEEGTIPTLFGTELTTDDEDSINMFHKAQNFQEISDSVSLTYCDMNVEIDEYHNVSIKFANLCRICGTSTLDGIDIFATKGIELKLKERINLHMPISIDINDSLPQKVCTDCCNKLQIAHLLVVSCLRTDMRLKQFLNIDREPEYENKYNALIDECSLEMVQEMCMDDNLHPNSFTINKIINSDSENLRELGNRECSEIQNNFQSISKDVVPLELNTLIQTCREVDSKNETITKEILNLQQDKIQNGSLSVICLHCQTFCETQEIFDNHKIVCNKEQNEHVGMCKTVENGNEQLNREIENPQTCKTFDGKQVINKNCESMHCTVCNQTFKCQQDYDNHKHLRNLTETNKRCGHCEKVYHNKKDLLIHIMESHERRLLFKCSICDKTYEKWSSLDIHEATHRVDKPYLCDLCGKSFKHSNNLRGHKRIHLDETIKKRHMCDICGNAFRSRFHLREHMNQHDDNRPYSCEQCGKAFYKRIQLRQHKLSHGSNRHTCPICSAMFNRRGNMIAHMKRHSNDNGGYKCSVCAYKCKSMSELKIHRKKHTEEEIVDSIKKKCIDKEIWRCNICNKIFSKRAILLNHERVHEDDKFYECEECGKKLASKNSLMYHKKSKHLREKPHMCHYCGNSFVSKEARLIHERIHTGERPYICKVCNTQYRCSSNLSQHMKIHTGLKPHKCHFCSKGFTRKGALTVHERIHTGVKPYSCETCGKSFSQKNDMLKHVKRATADGCCAVSVTRLNEKENMLKHTAMQESLVISNNNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01477082;
90% Identity
-
80% Identity
-