Ains006245.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acromyrmex insinuator
Gene Symbol
-
Assembly
GCA_017607455.1
Location
JAANHZ010000870.1:1281091-1284094[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 9.2 4.6e+02 0.6 2.7 3 23 402 422 400 422 0.82
2 14 0.00068 0.034 13.6 2.7 2 23 431 453 430 453 0.95
3 14 5.5e-05 0.0028 17.1 0.7 1 23 459 481 459 481 0.98
4 14 3.8e-06 0.00019 20.7 2.6 1 23 487 509 487 509 0.96
5 14 1.6e-05 0.00083 18.7 2.9 1 23 518 540 518 540 0.97
6 14 0.00016 0.0081 15.6 3.6 1 23 546 568 546 568 0.97
7 14 5e-07 2.5e-05 23.5 1.8 1 23 573 595 573 595 0.98
8 14 0.0035 0.18 11.4 3.9 1 23 602 624 602 624 0.98
9 14 0.00076 0.038 13.5 0.3 2 23 644 665 643 665 0.96
10 14 6.9e-05 0.0035 16.8 1.3 1 23 671 694 671 694 0.97
11 14 0.0028 0.14 11.7 2.0 1 23 700 722 700 722 0.96
12 14 0.0013 0.065 12.8 3.4 1 23 728 750 728 750 0.98
13 14 3.7e-06 0.00019 20.8 3.6 1 23 756 778 756 778 0.98
14 14 3.2e-06 0.00016 21.0 0.8 1 22 784 805 784 805 0.96

Sequence Information

Coding Sequence
ATGAAAATTGTTTGTGCTGCgttaaattgcaaatattctTCAGAAAACGAGGATTCCTCGAATGttacttttatcaattttccCAACAATGACAcagcCAAAGTATGGGCAGAATGTTGTGGCAGATTGGATTTAGCTACAAAATCAAATGCGGAATTGCATTCgaattattacatttgttcTCATCACATTGAAGATCGCTGTTATATAAGCAAAACTATTCCCATTGTTGTAGAAGAAGGAACCATTCCCACTTTATTTGGGACTAGCTTGACTACTGACGATGAAGATTCGATAAATATGTTTCATAAGGCACAGCATCTCCAAGAAATAGATGACAATGTGCCTTTAACATATTGCGATATGAATGTCGAGATAGacgaatatcataatatctcTGTCAAATTTGCCAATTTATGTCGAATCTGTGGAATATCCACTTTGGATGGAATAGATATCTTTGCAACCAAGGGCATAgaacttaaattaaaagaaagaataaatttacatatgccTATCTTGATTGATGTAAACGATTCATTACCACGGAAAGTATGTACCGATTGCTGTAATAAATTGGAAGTTGTACATTCACTAGTTGTCTCATGTCTTAGAACTGACATGCGcttaaaacaatttctaaatattgacAGAGAACCAGAATACGAAAATAAGTACAATGCATTGATTGACGAATGTTCCTTAGAGATAGTCCAAGAAATGTGTATGGACGATAATTTGCATCCTAATTCATTTactatgaataaaatgataaactcTGATTCAGAAAGTTTAAGAGAATTAGAAAATGGAGAATGTACTGAAatacagaataataattttcaaagcaTTTCGAAAAATGTGCCGTTAGAACTAAATACTCTAATCCAAACTTGTAGAGAAGTTAACAGTAAAAGTAATGCAAATGAGACTATCACAGAAGAGATATTAAACTTGCAACAAGATAAGATCCAAAATGGAAGTCTTAGTGTTATATGTCTACAATGCCAAACTTTCTGTGAAACACaggaaatatttgaaaatcataaaataatttgtaataagacACAAGATATCTCTGAACATGTAGATATGTGTAAAACTCCAGAAAATCAACTTAATcgtgaaagagaaaattttcagacacataaaaaaacattttatgataAGCAAGTTACTGATAAAAACTACGAATCAGTGCATTGTACTGTTTGCAACCAAGCGTTTGCATGTCAGCAGGATTATGATAATCACAAATATCTTCATGAAAATCTTATTGAAACGAATAAAAGATGTGGTCATTGTGAAAAAGTATAtcatgacaaaaaaaatttgttaatacacATTATGGAATCGCACGAGggacaattattatttaagtgcTCTACATGCAATAAAACATATGAGAAGTGGTCTAGTTTAGATATTCACGAAGCTACTCATAGAATAGATAAACCCTATCTTTGCGATCTGTGTGGAAAAAGTTTTAAGCATTCCAATAATTTAAGGGGCCATAAAAGAATTCATTTGGACGAAGCTATAAAGAAAAGACACGTGTGTGAGATCTGTGGTAATGCATTTAGATCACGATTTCATTTGCGAGAACATATGAATCAGCACGATGATAACAGACCCTATTGTTGTGAACAATGCGGCAAAGCTTTTTACAAAAGGATTCAATTGCGACAGCACAAATTATCACATGGCTCTAATAGGCATACATGTTCGATTTGCGGTACAACGTTTAATCGTAGAGGGAATATGATCGCACACATGAAACGGCATAATAACGATAATGGAGGATATAAATGTAgtgtTTGTGCCTACAAATGTAAATCTATGAGCGAATTAAAGATACACAGGAAAAATCATACCGAGGAGGAAATAGTGGACAGCATTAAGAAGAAATGTACCGATAAGGACATATGGCgttgtaatatttgtaataaaatattctcaaagCGCGCCATCTTGTTAAATCACGAGCGCATACATGAAGATGATAAGTTTTATGAATGTGATGAATGCGATAAGAAATTAGCAAGTAAAAGCTCGTTAATGTATCATAAGAAGTCGAAACATTTGAGAGAGAAGCCGCATATGTGTCATTATTGCGGAAATTCGTTTGTTTCGAGAGAGGCGCGGCTAATTCATGAAAGGATACATACCGGTGAACGCCCTTACATTTGCAAGGTGTGCAATACGCAGTACAGATGTTCCAGTAATCTTAGCCAGCATATGAAGATCCACACGGGTCTGAAGCCGCATAAGTGCCATTTTTGCGACAAAGGTTTTACGCGTAAAGGCGCGCTAACTGTACACGAAAGAATCCACACGGGTGTTAAGCCTTATTCTTGCGAGACCTGTGGTAAAAGCTTCTCACAGAAGAATGATATGTTAAAGCATATTAAACGCACAACTGCAGATGGATGCAGCGCAGTTATTGTAACTAAATCattaaacgaaaataaaaatatgttaaagcACACTGTGATGCATGAGCAAGACTCCTTAGTAATTTCGAATATCAATGca
Protein Sequence
MKIVCAALNCKYSSENEDSSNVTFINFPNNDTAKVWAECCGRLDLATKSNAELHSNYYICSHHIEDRCYISKTIPIVVEEGTIPTLFGTSLTTDDEDSINMFHKAQHLQEIDDNVPLTYCDMNVEIDEYHNISVKFANLCRICGISTLDGIDIFATKGIELKLKERINLHMPILIDVNDSLPRKVCTDCCNKLEVVHSLVVSCLRTDMRLKQFLNIDREPEYENKYNALIDECSLEIVQEMCMDDNLHPNSFTMNKMINSDSESLRELENGECTEIQNNNFQSISKNVPLELNTLIQTCREVNSKSNANETITEEILNLQQDKIQNGSLSVICLQCQTFCETQEIFENHKIICNKTQDISEHVDMCKTPENQLNRERENFQTHKKTFYDKQVTDKNYESVHCTVCNQAFACQQDYDNHKYLHENLIETNKRCGHCEKVYHDKKNLLIHIMESHEGQLLFKCSTCNKTYEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDEAIKKRHVCEICGNAFRSRFHLREHMNQHDDNRPYCCEQCGKAFYKRIQLRQHKLSHGSNRHTCSICGTTFNRRGNMIAHMKRHNNDNGGYKCSVCAYKCKSMSELKIHRKNHTEEEIVDSIKKKCTDKDIWRCNICNKIFSKRAILLNHERIHEDDKFYECDECDKKLASKSSLMYHKKSKHLREKPHMCHYCGNSFVSREARLIHERIHTGERPYICKVCNTQYRCSSNLSQHMKIHTGLKPHKCHFCDKGFTRKGALTVHERIHTGVKPYSCETCGKSFSQKNDMLKHIKRTTADGCSAVIVTKSLNENKNMLKHTVMHEQDSLVISNINA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01477082;
90% Identity
iTF_00182779;
80% Identity
iTF_00016731;