Tzet001395.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex zeteki
Gene Symbol
gfi1b
Assembly
GCA_001594055.1
Location
NW:26322-32699[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0043 0.28 11.0 2.8 2 23 434 456 433 456 0.95
2 13 0.00024 0.016 15.0 1.9 1 23 462 484 462 484 0.98
3 13 3.5e-06 0.00023 20.7 2.6 1 23 490 512 490 512 0.96
4 13 1.5e-05 0.001 18.7 2.9 1 23 521 543 521 543 0.97
5 13 0.00015 0.0098 15.6 3.6 1 23 549 571 549 571 0.97
6 13 8.4e-07 5.6e-05 22.7 1.1 1 23 576 598 576 598 0.98
7 13 0.0024 0.16 11.8 4.2 1 23 605 627 605 627 0.99
8 13 0.00066 0.043 13.6 0.3 2 23 647 668 646 668 0.96
9 13 3.8e-05 0.0025 17.5 1.0 1 23 674 697 674 697 0.97
10 13 0.0017 0.11 12.3 2.1 1 23 703 725 703 725 0.96
11 13 0.0013 0.088 12.6 3.1 1 23 731 753 731 753 0.98
12 13 3.5e-06 0.00023 20.7 3.6 1 23 759 781 759 781 0.98
13 13 3.2e-05 0.0021 17.7 0.8 1 21 787 807 787 808 0.95

Sequence Information

Coding Sequence
ATGAGAATTGTTTGCGCtgcattaaattgtaaatattcctCAGAAAATGAGGATTCCTCGAATgtcacttttataaattttcccaACGATGACACAGCCAAAGTTTGGGCAGAATGTTGCGGCAGATCGGATTTAGCTACAAAATCAAATGCGGAATTGcatttgaattattacatcTGTTCTCACCACATTGAAGATCGCTGTTATGTAAGCAAAACTATTCCCATTGTTGTAGAAGAAGGTACCATTCCTACTTTATTTAGGACTGACTTGACTACTGACGATGAAGACCCCATAAATATGTTTCATAAGGCACAGCATCTCCAAGAAATAGATGACAGTGTGCCTTTAACATATTGTGATATGAATGTTGAGATAGATGAGTATCATAATATCTCTGTTAAATTTACCAATTTATGTCGAATCTGTGGGACATCCACTTTGGATGGAATAGATATCTTTGCAAGCAAGGGCATAgaacttaaattaaaagaaagaataaatttacatatgccTATCTCAATTGACATGAACGATTCATTACCACAGAAAGTATGTACTGATTGCTGTAATAAATTGGAAGTTGCACATTCACTGGTCGTCTCATGTCTTAGGACTGACATGCGcttaaaacaatttctaaatattgacAAAGAGCCAGAATATGAAAATAAGTACAATGCATTGATTGATGAATGTTCCTTGGAGATAGTCCAAGAAATGTGTATGGATGATAATTTGCATCCTAAttcatttactataaataaaatgataaactCTGATTCAGAAAGTTTAAGAGGATTAGAAAATGGAGAATGTACTGAAatacagaataataattttcagaacaTTTCAAAAGATGTGCCATTAGAATTAAATACTCTAATCCAAACTTGTAGAGAAGTTAACAGTAAAAGTAATGCAAATGAGACTATCACAGAAGAGATATTAAACTTGCAACAAGATAAGATTCAAAATGGAAGTCTTAGCGTTATGTGTCTGCAATGCCAAACTTTCTGTGAAACACaggaaatatttgaaaatcataaaatagttTGTAATAAGGAGCAAAATGTCTCTGAACATGTAGACATGTATAAAACTGCAGAAAACAGGAACGAGAAACTTGATCGtgaaatagaaaattcccagACATGCAACAAAACATTTGATGGTAAGCAAGTTATTGATAAAAACTGTGAATCAGTGCATTGTACTGTTTGCAACCAAGCATTTAAATGTCATCAGGATTATGATGATCATAAACATCTTCATGGAAATCTTACCGAAACGAATAAAAGATGTGGTCATTGTGAAAAAGAATATCATAACAAAAAAGACTTGTTAATACATATCATGGAATCGCACGAGGgacgattattatttaagtgcTGTACATGCGATAAAACATATGAGAAGTGGTCTAGTTTAGATATTCACGAAGCTACTCACAGAGTAGATAAACCTTATCTTTGTGATCTGTgtggaaaaagttttaaacattctaataatttaaggGGTCATAAAAGAATTCATTTGGACGAAGCTATAAAGAAAAGACACGTGTGTGAGATCTGTGGCAATGCGTTTAGATCACGATTTCATTTGCGAGAACATATGAATCAGCATGATGACAACAGACCCTATTGTTGTGAACAATGCGGCAAAGCTTTTTACAAAAGGATTCAATTGCGACAACATAAATTATCGCATGGCTCTAATAGGCATACATGTTCGATTTGTGGTGCAACATTTAATCGTAGAGGGAACATGATCGCACACATGAAACGGCATAATAACGATAATGGAGGATATAGATGCAGcgtTTGTGCCTACAAATGTAAATCTATGAGCGAATTAAAGGTACATAGGAAAAAACATACCGAGGAGGAAATAGTGGACAGCATTAAGAAGAAATGTACCGATAAGCAGATATGGCGTTGTAACATTTGTAATAAGATATTCTCGAAGCGCGCCATTTTGTTAAATCACGAGCGCGTACACGAAGACGATAAGTTTTACGAATGTGATGTCTGCGGCAAGAAATTAGCAAGTAAAAGCTCGTTAATGTATCACAAGAAGTCGAAGCATTTGAGAGAGAAGCCGCATATGTGTCATTATTGCGGAAATTCGTTCGTTTCGAAAGAGGCGCGGTTGATTCATGAAAGGATACATACCGGTGAACGCCCTTACATTTGCAAGGTGTGCAATATGCAGTACAGATGCTCCAGTAATCTTAGCCAGCACATGAAGATCCACACGGGTCTGAAGCCGCATAAGTGCCATTTTTGCGACAAAGGTTTTACGCGCAAAGGCGCGCTAACCGTACACGAGAGAATCCACACGGGTGTTAAGCCTTATTCTTGCGAGACCTGTGGTAAAAACTTCTCACAGAAGAATGACATGTTAAAGCACGTCAAACGCACAACTGCAGATGGATGCAGCGCGGTTAGTGTAACCAGATCTTTAaacgaaagtaaaaatatgttaaagcACACTGTGACACACGAGCAAGATTCCTTAGTAATTTCGAATATCAATGCATGA
Protein Sequence
MRIVCAALNCKYSSENEDSSNVTFINFPNDDTAKVWAECCGRSDLATKSNAELHLNYYICSHHIEDRCYVSKTIPIVVEEGTIPTLFRTDLTTDDEDPINMFHKAQHLQEIDDSVPLTYCDMNVEIDEYHNISVKFTNLCRICGTSTLDGIDIFASKGIELKLKERINLHMPISIDMNDSLPQKVCTDCCNKLEVAHSLVVSCLRTDMRLKQFLNIDKEPEYENKYNALIDECSLEIVQEMCMDDNLHPNSFTINKMINSDSESLRGLENGECTEIQNNNFQNISKDVPLELNTLIQTCREVNSKSNANETITEEILNLQQDKIQNGSLSVMCLQCQTFCETQEIFENHKIVCNKEQNVSEHVDMYKTAENRNEKLDREIENSQTCNKTFDGKQVIDKNCESVHCTVCNQAFKCHQDYDDHKHLHGNLTETNKRCGHCEKEYHNKKDLLIHIMESHEGRLLFKCCTCDKTYEKWSSLDIHEATHRVDKPYLCDLCGKSFKHSNNLRGHKRIHLDEAIKKRHVCEICGNAFRSRFHLREHMNQHDDNRPYCCEQCGKAFYKRIQLRQHKLSHGSNRHTCSICGATFNRRGNMIAHMKRHNNDNGGYRCSVCAYKCKSMSELKVHRKKHTEEEIVDSIKKKCTDKQIWRCNICNKIFSKRAILLNHERVHEDDKFYECDVCGKKLASKSSLMYHKKSKHLREKPHMCHYCGNSFVSKEARLIHERIHTGERPYICKVCNMQYRCSSNLSQHMKIHTGLKPHKCHFCDKGFTRKGALTVHERIHTGVKPYSCETCGKNFSQKNDMLKHVKRTTADGCSAVSVTRSLNESKNMLKHTVTHEQDSLVISNINA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01477082;
90% Identity
iTF_00182779;
80% Identity
iTF_01477662;