Basic Information

Insect: Tipula vernalis
Gene Symbol: stc
Assembly: GCA_958295665.1
Location: OY282558.1:169743524-169746509[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.8 1.8e+05 -4.0 1.6 15 19 294 298 293 298 0.81

2 16 0.084 8.2e+03 0.3 0.3 4 10 327 333 326 333 0.95

3 16 4.1e-07 0.04 17.3 17.3 3 19 340 356 339 356 0.93

4 16 1.9 1.9e+05 -4.1 1.8 6 10 382 386 382 386 0.97

5 16 3e-05 3 11.3 10.1 3 19 394 410 392 410 0.91

6 16 0.82 8e+04 -2.9 0.9 6 10 440 444 439 444 0.89

7 16 4.1e-07 0.04 17.3 14.5 1 19 450 468 450 468 0.93

8 16 0.3 3e+04 -1.5 0.9 5 10 498 503 498 503 0.96

9 16 4e-05 3.9 10.9 10.9 4 18 516 530 509 531 0.87

10 16 0.096 9.5e+03 0.1 10.4 1 11 571 581 571 593 0.91

11 16 7.2e-10 7.1e-05 26.1 15.3 1 18 598 615 598 616 0.97

12 16 0.93 9.2e+04 -3.1 1.1 6 10 645 649 644 650 0.82

13 16 2 2e+05 -6.4 7.0 15 18 669 672 660 673 0.76

14 16 0.00054 53 7.3 7.2 1 16 709 724 709 731 0.86

15 16 0.00029 28 8.2 12.4 2 19 742 760 741 760 0.91

16 16 1 9.9e+04 -3.2 1.7 8 12 776 780 769 780 0.65

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.8	1.8e+05	-4.0	1.6	15	19	294	298	293	298	0.81
2	16	0.084	8.2e+03	0.3	0.3	4	10	327	333	326	333	0.95
3	16	4.1e-07	0.04	17.3	17.3	3	19	340	356	339	356	0.93
4	16	1.9	1.9e+05	-4.1	1.8	6	10	382	386	382	386	0.97
5	16	3e-05	3	11.3	10.1	3	19	394	410	392	410	0.91
6	16	0.82	8e+04	-2.9	0.9	6	10	440	444	439	444	0.89
7	16	4.1e-07	0.04	17.3	14.5	1	19	450	468	450	468	0.93
8	16	0.3	3e+04	-1.5	0.9	5	10	498	503	498	503	0.96
9	16	4e-05	3.9	10.9	10.9	4	18	516	530	509	531	0.87
10	16	0.096	9.5e+03	0.1	10.4	1	11	571	581	571	593	0.91
11	16	7.2e-10	7.1e-05	26.1	15.3	1	18	598	615	598	616	0.97
12	16	0.93	9.2e+04	-3.1	1.1	6	10	645	649	644	650	0.82
13	16	2	2e+05	-6.4	7.0	15	18	669	672	660	673	0.76
14	16	0.00054	53	7.3	7.2	1	16	709	724	709	731	0.86
15	16	0.00029	28	8.2	12.4	2	19	742	760	741	760	0.91
16	16	1	9.9e+04	-3.2	1.7	8	12	776	780	769	780	0.65

Sequence Information

Coding Sequence: ATGTCACAAAATTATTATGGACCTTATTGTGATGGAGCCCAGTTTTTtaaccaatttcaaaataatgtggATGCGCAGTATTACTACCATGTTAATGGGGTACCTCAGTACAACTACTATGGGAATGAGTTTACGCCTCCGCAACAAAGGCAAcagcaacaaattaattatcaGTCTCAGTATGTCCCGCCATCGACACAATatagttttcaaattgaaaattccaCCTTGGTTCCGACAGCTGCCGAATTTGTGCCAAGCTGGTTGAATAAAGAAGGTGCCACTACCTCGAATGGGACCAGCTCGCATGATGTCCAGCAAGACGTATCGAATACTACAGATGAGCTGTCGAATTTATCATTGAATCCGTCGAATAAAAATGATCGTGATTATCGAGTGGATAATAACCAAAGAGGATTAGGTAATAGAAGGATCACATACAAAGATAATCGAAATGATTTTCGTGAGAATGATGGATATCGGAATAATCATCGGCCCCGTTATGACAATAATAACTATAATAACAGTCGTTTTAATAATTATCGTTACGAAGATAATTctcgttacaacaacaatcgatCACGGAATACTTACAAAAAGGATAATGGCAAGCCACTACATAAATCAAAATCTGGCTTACAATCGGGAGTACAATCATCTTCCTCAGCCGAATCTGTTCCTgatccaaaaattgaaaaactttcgcaACGTGATAATTTATCGCATGAAATCGATTCGGGTAAGCTGGAATGTCTTGTTTGCTGTGAAAATATTAAGCCCTATCAATCGATATGGTCGTGCAGCAATTGCTATCATATTCTGCATTTGAATTGTACCATAAAATGGGCACACAGTTCGAAATCAGATGATGGATGGCGGTGTCCAGCTTGTCAGaatgtttcacaaaaaattccacGTGACTATTACTGCTTTTGTGGCAAGACAAAAAATCCACAGAATAATTATAATGATTTGGCACACAGTTGTGGTGAATTGTGCGAACGTAAAAATGGTTGTGAACATAGTTGTACCCAACTGTGCCATCCAGGACCATGTCCACCATGTCAGGCAACCGTTACACGGTATTGCGGTTGTGGAAAAACGAATCGGATCATGCAATGCAATCTAAAGAATGATATCGTTTGTGAGCAGATTTGTGAGAAGCTGCTTAGTTGTGAACTACATGATTGCAAATTAAAATGCCACCAAGGAGATTGTGAAGTATGCAAAGAGAAATTTACGTTCAAATGCTACTGTAGCAAAAATACGCGTGAGGTTCCGTGCGACATCGATAATACTACTTTGGCTAATTATAGTTGTGAGAAGATCTGCAATCGTATGTTGTCGTGTCAAAATCATCGTTGCCAACAAATTTGTCATCCCGGCGAATGCGGTGATTGTAAACTATCTCCGGACACGATTAAATCTTGTCCGTGTGGAAAGACTCGGATAGTTGCGGGACAACGTAAATCGTGTCTCGATCCAGTGCCAACGTGTAATCGCGTCTGCAAAAAGCCGCTTCCGTGTGGACCTCGTCGTGCACCTCATACGTGTACTGGAAAATGTCATTCCGGGAATTGCTTGGCCTGCAATAAGGAAACCGCTGTTAAATGTCGTTGTGGTCAAATGGATCAGATGGTAAAATGTCGTGAGCTTCAAACTCGCGCTGATGATGCTCGTTGTAAAAAGAGATGCACTAAAAAACGGAATTGTGGCAAGCACAAGTGTAATCTAGAGTGCTGCATCGATATCGATCATATTTGTCCTATACCGTGCAATCACCAATTGTCATGTGGCAAACATAAATGCGATAAGCCGTGTCATAAAGGGCGTTGTCCACCATGTTATCGTAGCTCTTTTGAAGAACTGTACTGTGAATGTGGTGTCAATGTTATATATCCTCCAGTGCCTTGCGGAACAAAACGGCCCGAATGTGAAAATCCGTGTACGCGACAACATCCGTGTGATCATCCTGTGCAACATAATTGCCATTCGATTGCCGTCTGTCCTCCGTGTATGATCTTAACTACAAAATTCTGTTATGGGAAACATGAACAGCGCAAAACTATTCCATGTAGTCAAGAAGATTTTAGTTGCGGCATGCCGTGCAATAAACCACTAAATTGTAATCGCCACAAATGTATTCGAAGTTGTCACAAAGATGCTTGTGCCGTTGATGGTGAGGTATGTAAACAGAATTGTACCACGATACGTTCTACTTGTGCTCATAAATGTAATGCACCTTGTCATGAGAGTGAATGTCCTGATACGCCATGTCGGGAAACGGTTGAAGTCACCTGCCAATGTGGTCATCGGAAACAAACTCGTACCTGTCATGATTTTGCAAAAGATTTCCGACGCATTGCAACTGCCAATTTAGCATCATCCATGCAAGAAATGCAACGGGGCCAATCGGTGGAGCTAAGTGATATATTCGGTCCAGTACGAGTAAACGCGAGTAGTAACAAAACACTAGAATGTACAGAAGAATGTCGTGTTATTGATCGAAATCGTCGACTTGATATTGCGCTTCAGATTCGAAATCCTGATGTTTCATCAAAACTTCAGCCAAAGTATTCCGATTACCTAAGATCCTGGGGCAAAAAGGATCCCAAATTTTTGGAGACTGTACACGATAAAATAACGGAATTGGTAAAATTGTCGAAGGACAGTAAACAAAAATCTCGTAGTCATTCATTCCCAACGATGAATCGTGATAAGCGGCAAGTGATTCATGAAATGTGTAGTATGTTTGGCGTTGAATCGGTGGCATATGATGCAGAACCAAACCGTAATGTTGTGGCCACGGCTTATAAGGATCGGtCGTGGCTACCAGCTATGAGTGTCCTTGAAGTTTTACAGCGCGAGGGTGGTCAACGACGAATACCCGTTCCGCAGAACGCGTGGGGTATAAAAAAATGA
Protein Sequence: MSQNYYGPYCDGAQFFNQFQNNVDAQYYYHVNGVPQYNYYGNEFTPPQQRQQQQINYQSQYVPPSTQYSFQIENSTLVPTAAEFVPSWLNKEGATTSNGTSSHDVQQDVSNTTDELSNLSLNPSNKNDRDYRVDNNQRGLGNRRITYKDNRNDFRENDGYRNNHRPRYDNNNYNNSRFNNYRYEDNSRYNNNRSRNTYKKDNGKPLHKSKSGLQSGVQSSSSAESVPDPKIEKLSQRDNLSHEIDSGKLECLVCCENIKPYQSIWSCSNCYHILHLNCTIKWAHSSKSDDGWRCPACQNVSQKIPRDYYCFCGKTKNPQNNYNDLAHSCGELCERKNGCEHSCTQLCHPGPCPPCQATVTRYCGCGKTNRIMQCNLKNDIVCEQICEKLLSCELHDCKLKCHQGDCEVCKEKFTFKCYCSKNTREVPCDIDNTTLANYSCEKICNRMLSCQNHRCQQICHPGECGDCKLSPDTIKSCPCGKTRIVAGQRKSCLDPVPTCNRVCKKPLPCGPRRAPHTCTGKCHSGNCLACNKETAVKCRCGQMDQMVKCRELQTRADDARCKKRCTKKRNCGKHKCNLECCIDIDHICPIPCNHQLSCGKHKCDKPCHKGRCPPCYRSSFEELYCECGVNVIYPPVPCGTKRPECENPCTRQHPCDHPVQHNCHSIAVCPPCMILTTKFCYGKHEQRKTIPCSQEDFSCGMPCNKPLNCNRHKCIRSCHKDACAVDGEVCKQNCTTIRSTCAHKCNAPCHESECPDTPCRETVEVTCQCGHRKQTRTCHDFAKDFRRIATANLASSMQEMQRGQSVELSDIFGPVRVNASSNKTLECTEECRVIDRNRRLDIALQIRNPDVSSKLQPKYSDYLRSWGKKDPKFLETVHDKITELVKLSKDSKQKSRSHSFPTMNRDKRQVIHEMCSMFGVESVAYDAEPNRNVVATAYKDRSWLPAMSVLEVLQREGGQRRIPVPQNAWGIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01457025; iTF_01054913; iTF_01052866; iTF_01054012; iTF_01054013; iTF_01459166; iTF_01458034; iTF_01455352;
90% Identity: iTF_01459166;
80% Identity: -