Thel060249.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula helvola
Gene Symbol
stc
Assembly
GCA_963556165.1
Location
OY744482.1:133985259-133988243[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.8 1.2e+05 -4.0 1.6 15 19 294 298 293 298 0.81
2 16 0.084 5.8e+03 0.3 0.3 4 10 327 333 326 333 0.95
3 16 4.1e-07 0.028 17.3 17.3 3 19 340 356 339 356 0.93
4 16 1.9 1.3e+05 -4.1 1.8 6 10 382 386 382 386 0.97
5 16 3e-05 2.1 11.3 10.1 3 19 394 410 392 410 0.91
6 16 0.82 5.6e+04 -2.9 0.9 6 10 440 444 439 444 0.89
7 16 5.8e-07 0.04 16.8 12.4 1 19 450 468 450 468 0.93
8 16 0.3 2.1e+04 -1.5 0.9 5 10 498 503 498 503 0.96
9 16 4e-05 2.8 10.9 10.9 4 18 516 530 509 531 0.87
10 16 0.096 6.6e+03 0.1 10.4 1 11 571 581 571 593 0.91
11 16 7.2e-10 5e-05 26.1 15.3 1 18 598 615 598 616 0.97
12 16 0.93 6.4e+04 -3.1 1.1 6 10 645 649 644 650 0.82
13 16 2 1.4e+05 -6.4 7.0 15 18 669 672 660 673 0.76
14 16 0.00079 55 6.8 8.6 1 16 709 724 709 731 0.87
15 16 0.00029 20 8.1 12.3 2 19 742 760 741 760 0.91
16 16 1 6.9e+04 -3.2 1.7 8 12 776 780 769 780 0.65

Sequence Information

Coding Sequence
ATGTCACAAAATTATTACGGACCTTATTGTGATGGAGCTCAgttttttaaccaatttcaaaataatgtgGATGCGCAGTATTACTACCATGTTAATGGGGTACCTCAGTACAATTACTATGGGAATGAGTTTACGCCTCCGCAACAAAGGCAACAGCAACAAATTAATTATCAGTCTCAGTATGTCCCGCCATCGACACAATAcagttttcaaattgaaaattccacGTTGGTTCCGACAGCTGCCGAATTTGTGCCAAGCTGGTTGAATAAAGAAGGTGCCACTACCTCGAATGGAACCAGCTCGCATGATGCCCAGCAAGACGTATCGAATACTACAGATGAGCTGTCGAATTTATCATTGAATCCGTCGAATAAAAATGATCGTGATTATCGAGTGGATAATAATCAAAGAGGATTAGGGAATAGAAGGATCACATACAAAGATAATCGAAATGATTTTCGTGAGAATGATGGATATCGGAATAATCATCGCCCCCGGTATGACaataataactataataatagtcgttttaataattatcgTTACGAAGACAATTCTCGTTATAACAACAATCGATCACGGAATACTTACAAAAAGGATAATGGCAAACCACTACATAAATCAAAATCTGGCTTACAATCGGGAGTACAATCATCTTCCTCAGCCGAATCTGTTCCTgacccaaaaattgaaaaactttcgCAACGTGATAATTTATCGCATGAAATCGATTCGGGTAAGCTGGAATGTCTTGTTTGCTGTGAAAATATTAAGCCCTATCAATCGATATGGTCGTGCAGCAATTGCTATCATATTCTGCATTTGAATTGTACCATAAAATGGGCGCACAGTTCGAAATCAGATGATGGATGGCGGTGTCCAGCTTGCCAGaatgtttcacaaaaaattccaCGTGACTATTACTGCTTTTGTGGCAAGacaaaaaatccacaaaataattataatgattTGGCACACAGTTGTGGTGAATTGTGCGAACGCAAAAATGGTTGTGAACATAGTTGCACCCAACTGTGCCATCCAGGGCCATGTCCGCCGTGTCAGGCAACAGTTACACGGTATTGCGGATGTGGAAAAACGAATCGGATCATGCAATGCAATCTAAAGAATGATATCGTTTGTGAGCAGATTTGTGAGAAACTGCTGTGTTGTGAACTACATGATTGCAAATTAAAATGCCATCAAGGAGATTGTGAAGTATGCAAAGAGAAATTTACGTTCAAATGCTACTGTAGCAAAAATACGCGTGAGGTACCGTGTGACATTGATAATACTACTTTGGCCAATTATAGTTGTGAGAAGATCTGCAATCGTATGTTGTCGTGTCAAAATCATCGTTGCCAACAAATTTGTCATCTCGGCGAATGCGGTGATTGTAAACTATCTCCGGATACGATTAAATCTTGTCCGTGTGGAAAGACTCGGATAGTTGCGGGACAACGTAAATCGTGTCTCGATCCAGTACCAACATGCAATCGTGTCTGCAAAAAGCCGCTTCCATGTGGACCTCGTCGTGCACCTCATACGTGTACAGGAAAATGTCATTCCGGGAATTGCTTGGCCTGCAACAAGGAAACCGCTGTTAAATGTCGTTGCGGTCAAATGGATCAGATGGTAAAATGTCGTGAGCTTCAAACTCGCGCTGATGATGCTCGGTGTAAAAAGAGGTGCACTAAGAAACGGAATTGTGGCAAGCACAAGTGTAATCTAGAGTGCTGCATCGACATTGATCATATTTGTCCTATACCGTGCAATCACCAATTGTCATGTGGCAAACATAAATGCGATAAACCATGTCATAAAGGACGTTGTCCACCATGTTATCGTAGCTCTTTCGAAGAGCTGTATTGTGAATGTGGTGTCAATGTTATATATCCTCCAGTGCCTTGCGGAACAAAACGGCCAGAGTGTGAAAATCCGTGCACACGACAACATCCGTGTGATCATCCTGTGCAACATAATTGCCATTCGATTGCCGTCTGTCCTCCGTGTATGATCTTAACTACAAAATTCTGTTATGGGAAACATGAACAGCGTAAAACTATTCCGTGTAGCCAAGAAGATTTTAGCTGCGGCATGCCGTGCAATAAACCCCTAAATTGTAATCGCCACAAATGTATTCGAAATTGTCACAAAGATCCTTGTGCCGTTGAAGGTGAAGTATGTAAACAGAATTGTACCACAATACGGTCAACTTGTGCTCATAAATGTAACGCACCTTGTCATGAGAATGAATGTCCTGATACACCATGTCGAGAAACGGTTGAAGTCACCTGCCAATGTGGTCATCGGAAACAAACTCGTACCTGTCATGATTTTGCAAAAGATTTCCGACGTATTGCAACTGCCAATTTAGCATCATCCATGCAAGAAATGCAACGCGGCCAATCGGTGGAGTTAAGTGATATATTCGGTCCAGTAAGAGTAAACGCGAGTAGTAATAAAACGCTTGAATGTACTGAAGAATGTCGTGTCATTGATCGAAATCGTCGACTTGATATTGCGCTTCAGATTCGAAATCCTGATGTGTCATCAAAATTACAGCCAAAATATTCCGATTACCTAAGATCGTGGGGCAAAAAGGATCCCAAATTTTTGGAGACTGTACACGATAAACTAACGGAATTGGTAAAATTGTCGAAAGACAGTAAACAAAAATCTCGTAGTCATTCATTCCCAACGATGAATCGTGATAAGCGGCAAGTGATTCATGAAATGTGCAGTATGTTTGGTGTTGAATCGGTGGCATATGATGCAGAACCAAACCGTAATGTTGTGGCCACGGCTTATAAGGATCGGtcgtGGCTCCCAGCTATGAGTGTCCTTGAAGTTTTACAGCGCGAGGGTGGTCAACGACGAATACCCGTTCCGCAGAATGCGTGGGGTATAAAAAAATGA
Protein Sequence
MSQNYYGPYCDGAQFFNQFQNNVDAQYYYHVNGVPQYNYYGNEFTPPQQRQQQQINYQSQYVPPSTQYSFQIENSTLVPTAAEFVPSWLNKEGATTSNGTSSHDAQQDVSNTTDELSNLSLNPSNKNDRDYRVDNNQRGLGNRRITYKDNRNDFRENDGYRNNHRPRYDNNNYNNSRFNNYRYEDNSRYNNNRSRNTYKKDNGKPLHKSKSGLQSGVQSSSSAESVPDPKIEKLSQRDNLSHEIDSGKLECLVCCENIKPYQSIWSCSNCYHILHLNCTIKWAHSSKSDDGWRCPACQNVSQKIPRDYYCFCGKTKNPQNNYNDLAHSCGELCERKNGCEHSCTQLCHPGPCPPCQATVTRYCGCGKTNRIMQCNLKNDIVCEQICEKLLCCELHDCKLKCHQGDCEVCKEKFTFKCYCSKNTREVPCDIDNTTLANYSCEKICNRMLSCQNHRCQQICHLGECGDCKLSPDTIKSCPCGKTRIVAGQRKSCLDPVPTCNRVCKKPLPCGPRRAPHTCTGKCHSGNCLACNKETAVKCRCGQMDQMVKCRELQTRADDARCKKRCTKKRNCGKHKCNLECCIDIDHICPIPCNHQLSCGKHKCDKPCHKGRCPPCYRSSFEELYCECGVNVIYPPVPCGTKRPECENPCTRQHPCDHPVQHNCHSIAVCPPCMILTTKFCYGKHEQRKTIPCSQEDFSCGMPCNKPLNCNRHKCIRNCHKDPCAVEGEVCKQNCTTIRSTCAHKCNAPCHENECPDTPCRETVEVTCQCGHRKQTRTCHDFAKDFRRIATANLASSMQEMQRGQSVELSDIFGPVRVNASSNKTLECTEECRVIDRNRRLDIALQIRNPDVSSKLQPKYSDYLRSWGKKDPKFLETVHDKLTELVKLSKDSKQKSRSHSFPTMNRDKRQVIHEMCSMFGVESVAYDAEPNRNVVATAYKDRSWLPAMSVLEVLQREGGQRRIPVPQNAWGIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01460819;
90% Identity
iTF_01459166;
80% Identity
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