Basic Information

Insect: Tipula confusa
Gene Symbol: stc
Assembly: GCA_963556175.1
Location: OY744475.1:64365848-64368875[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.8 4.3e+04 -4.0 1.6 15 19 308 312 307 312 0.81

2 16 0.085 2e+03 0.3 0.3 4 10 341 347 340 347 0.95

3 16 4.1e-07 0.0096 17.3 17.3 3 19 354 370 353 370 0.93

4 16 2 4.6e+04 -4.1 1.8 6 10 396 400 396 400 0.97

5 16 4.1e-05 0.94 10.9 11.1 3 19 408 424 406 424 0.92

6 16 0.83 1.9e+04 -2.9 0.9 6 10 454 458 453 458 0.89

7 16 5.4e-05 1.2 10.5 12.8 1 19 464 482 464 482 0.93

8 16 0.31 7.2e+03 -1.5 0.9 5 10 512 517 512 517 0.96

9 16 0.0013 29 6.1 10.6 4 18 530 544 523 545 0.87

10 16 0.021 4.8e+02 2.2 11.3 1 11 585 595 585 607 0.91

11 16 2.1e-09 4.8e-05 24.6 14.3 1 18 612 629 612 630 0.97

12 16 0.95 2.2e+04 -3.1 1.1 6 10 659 663 658 664 0.82

13 16 2 4.6e+04 -9.3 10.7 10 18 677 686 666 687 0.71

14 16 0.0048 1.1e+02 4.3 13.2 1 16 723 738 713 745 0.83

15 16 0.0003 6.9 8.1 12.3 2 19 756 774 755 774 0.91

16 16 1 2.4e+04 -3.2 1.7 8 12 790 794 783 794 0.65

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.8	4.3e+04	-4.0	1.6	15	19	308	312	307	312	0.81
2	16	0.085	2e+03	0.3	0.3	4	10	341	347	340	347	0.95
3	16	4.1e-07	0.0096	17.3	17.3	3	19	354	370	353	370	0.93
4	16	2	4.6e+04	-4.1	1.8	6	10	396	400	396	400	0.97
5	16	4.1e-05	0.94	10.9	11.1	3	19	408	424	406	424	0.92
6	16	0.83	1.9e+04	-2.9	0.9	6	10	454	458	453	458	0.89
7	16	5.4e-05	1.2	10.5	12.8	1	19	464	482	464	482	0.93
8	16	0.31	7.2e+03	-1.5	0.9	5	10	512	517	512	517	0.96
9	16	0.0013	29	6.1	10.6	4	18	530	544	523	545	0.87
10	16	0.021	4.8e+02	2.2	11.3	1	11	585	595	585	607	0.91
11	16	2.1e-09	4.8e-05	24.6	14.3	1	18	612	629	612	630	0.97
12	16	0.95	2.2e+04	-3.1	1.1	6	10	659	663	658	664	0.82
13	16	2	4.6e+04	-9.3	10.7	10	18	677	686	666	687	0.71
14	16	0.0048	1.1e+02	4.3	13.2	1	16	723	738	713	745	0.83
15	16	0.0003	6.9	8.1	12.3	2	19	756	774	755	774	0.91
16	16	1	2.4e+04	-3.2	1.7	8	12	790	794	783	794	0.65

Sequence Information

Coding Sequence: atgtcacaaaattattatggacCATATTGTGATGGAGCCCAATTCTTTAGTCAGTTCCAAAATAATGTCGACCCGCAATATTATTATCCTGTTAACGGGGTGCCTCAATataactactatggaaataatGAGTTTGCGCCACCACCACCTCAGTCACAAAGAACGCCACAACAAAATTACCAGTCTCAATATGTCCCGCCAACGACACAGTAtagttttcaaattgaaaattcgacTTTGGTTCCAACAGCTGCCGAATTTGTGCCAAGTTGGTTGAATAAAGAAAGTGCAACCCCTTCGAATGAAAATAGTTCGCAAAGTGCTCAGGACGAAGATGTGTCGAGTACTTTAGATGAGTTATCTAATTTATCGTTAAATTCGGTGAATAAAAATGATCTTGATCATCACCATAGAAACGATAGTAACAACCAAAGAGGATCGGGAAACAGGAGGATAGCGTATAAAGATAATCGAAATGATTATCGCGAGAGTGATAATTATCGAAATAATCATCGCCCCCGTTATGacaataactataataataataataataatagcaacagCCGATATAATAATTACCGTTATGAAGACAATTCGCGTTACACCAACAATAGTCGGTCAAAGAATAATACTTACAAAAAAGATAATGGTAAGCCACTACAAAAATCCAAGTCTGGATCACAATCTGGTGTTCAATCGTCGTCGTCAGCCGAATCAGTACCCGACCcaaaaattgagaaattatCACAACGTGACAATTTATCGCACGAAATCGATTCGGGTAAGCTTGAGTGTCTTGTGtgctgtgaaaatattaaaccataCCAATCGATATGGTCGTGCAGCAATTGCTatcatattttgcatttaaattgtaCCATAAAATGGGCTCACAGTTCTAAATCGGATGACGGATGGCGGTGTCCCGCGTGTCAAAATGTTTCGCAAAATATTCCCCGCGATTACTACTGCTTTTGTGGCAAGGCAAAAAATCCGCAAAATAATTACAACGATTTGGCTCACAGTTGTGGTGAATTGTGCGAACGTAAAAACGGATGTGAACATAGTTGTACGCAATTGTGCCATCCAGGACCATGTCCACCGTGTCAAGCAACCGTTACCCGATATTGTGGATGTGGCAAATCGAATCGTATAATGCAGTGtaatcaaaaaaatgatattgtGTGCGAACAAATTTGCGAGAAATTGTTATGCTGTGAACTGCACGAGTGTAAATTGAAATGTCATCAAGGCGATTGTGAAATGTGTCCGCATAAATTCACGTTCAAATgctattgtaataaaaatacacGGGAGGTACCGTGCGACATTGATAATGCGAGTTTGGCAAATTATAGTTGCGAGAAAATCTGTAATCGAATGTTGTCGTGTCAAAATCATCGTTgccaaaaaatttgtcatcCCGACGAATGTGGTGATTGTAAATTAGCTCCGGACACGATTAAGTCGTGCCCATGCGGAAAGACAAGAATTGTTGCGGGTCAACGTAAATCGTGCCTCGATCCTGTTACAACATGTAATCGAGTGTGTAAAAAACCGCTTTCGTGTGGTCCTCGACGTACGCCACATTTGTGCACGGGAAAGTGTCATTCCGGTAATTGTTTGGCGTGTAACAAAGAAACAGCGGTTAAATGCCGATGTGGACAAATGGatcaaatgataaaatgtcGTGAACTTCAAACGCGGGCCGATGATGCGCGGTGTAAGAAGCGATGTACTAAGAAACGAAATTGTGGCAAGCATAAATGTAATCAAGAGTGTTGTATCGATATCGATCATATATGTCCGATTCCGTGTAACCACCAGTTATCGTGCGGAAAACATAAATGCGACAAACCATGTCATAAAGGACGTTGTCCAACCTGTTACCGCAGTTCCTTCGAAGAACTATACTGTGAATGTGGTGTCAATGTTATATATCCACCAGTGCCTTGTGGAACAAAACGGCCTGAGTGTGAAAATCCATGCACACGGCAACATCCGTGCGATCATCCTGTCCAGCATAATTGTCATTCGGTTGCCGTCTGCCCACCCTGTATGATACTAACCACTAAATCGTGTTATGGAAAACACGAACAGCGGAAAACTATTCCGTGTAGCCAAGAAGATTTTAGTTGCGGAATGCCGTGTAATAAACCACTGCCGTGCAAGAGGCACAAATGTATTCGAACGTGTCACAAGGATGCTTGTCCGATCGAGGGTGAAGTTTGTAAACAGAATTGTACTAAAATACGCACAACATGCGCGCATAAATGTAATGCCCCATGTCACGAAAACGAATGTCCCGACACACCATGTCGTGAAACTGTTGAAGTCACCTGCCAATGTGGTCATCGCAAACAAACTCGTACATGTCACGATTTTGCCAAAGATTTTCGACGAATTGCTACCGCCAATTTAGCATCGTCGATGCAAGAAATGCAACGTGGCCAATCGGTCGAGCTTAGCGATATATTTGGTCCCGTGCGAGTTAACACAAGTAGTAATAAGACATTGGAATGTACCGAAGAATGTCGTGTTGTCGATCGAAATCGACGACTCGATATAGCGCTTCAAATTCGTAATCCCGATACATCGTCAAAACTTCAACCCAAATATTCGGACTATCTTCGGTCGTGGGCCAAAAAGGATCCTAAATTTATCGAGACAATACACGATAAACTCACCGAGCTGGTCAAATTATCGAAGGACAGTAAACAAAAGTCGCGTAGTCATTCGTTTCCGATCATGAATCGTGATAAGCGACAAGTGGTACATGAACTATGTAGCATGTTTGGTGTGGAATCGGTGGCATACGATGCCGAACCAAATCGGAATGTTGTGGCCACGGCTTTTAAGGATCGGTCGTGGCTTCCAGCTATGAGTATCCTTGAAGTTATACAGCGCGAAGGGGGACAACGACGAATACCTGTTCCGCAGAATGCGTGGGgtataaaaaaatga
Protein Sequence: MSQNYYGPYCDGAQFFSQFQNNVDPQYYYPVNGVPQYNYYGNNEFAPPPPQSQRTPQQNYQSQYVPPTTQYSFQIENSTLVPTAAEFVPSWLNKESATPSNENSSQSAQDEDVSSTLDELSNLSLNSVNKNDLDHHHRNDSNNQRGSGNRRIAYKDNRNDYRESDNYRNNHRPRYDNNYNNNNNNSNSRYNNYRYEDNSRYTNNSRSKNNTYKKDNGKPLQKSKSGSQSGVQSSSSAESVPDPKIEKLSQRDNLSHEIDSGKLECLVCCENIKPYQSIWSCSNCYHILHLNCTIKWAHSSKSDDGWRCPACQNVSQNIPRDYYCFCGKAKNPQNNYNDLAHSCGELCERKNGCEHSCTQLCHPGPCPPCQATVTRYCGCGKSNRIMQCNQKNDIVCEQICEKLLCCELHECKLKCHQGDCEMCPHKFTFKCYCNKNTREVPCDIDNASLANYSCEKICNRMLSCQNHRCQKICHPDECGDCKLAPDTIKSCPCGKTRIVAGQRKSCLDPVTTCNRVCKKPLSCGPRRTPHLCTGKCHSGNCLACNKETAVKCRCGQMDQMIKCRELQTRADDARCKKRCTKKRNCGKHKCNQECCIDIDHICPIPCNHQLSCGKHKCDKPCHKGRCPTCYRSSFEELYCECGVNVIYPPVPCGTKRPECENPCTRQHPCDHPVQHNCHSVAVCPPCMILTTKSCYGKHEQRKTIPCSQEDFSCGMPCNKPLPCKRHKCIRTCHKDACPIEGEVCKQNCTKIRTTCAHKCNAPCHENECPDTPCRETVEVTCQCGHRKQTRTCHDFAKDFRRIATANLASSMQEMQRGQSVELSDIFGPVRVNTSSNKTLECTEECRVVDRNRRLDIALQIRNPDTSSKLQPKYSDYLRSWAKKDPKFIETIHDKLTELVKLSKDSKQKSRSHSFPIMNRDKRQVVHELCSMFGVESVAYDAEPNRNVVATAFKDRSWLPAMSILEVIQREGGQRRIPVPQNAWGIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01460819;
90% Identity: iTF_01459166;
80% Identity: -