Tcon029877.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- nfxl1
- Assembly
- GCA_963556175.1
- Location
- OY744477.1:6255706-6258421[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.88 2e+04 -3.0 1.4 14 19 182 187 182 187 0.86 2 20 0.4 9.2e+03 -1.9 0.4 4 10 218 224 218 224 0.93 3 20 7.2e-08 0.0017 19.7 17.3 1 19 232 249 232 249 0.99 4 20 9.6e-06 0.22 12.9 11.8 1 19 285 304 285 304 0.96 5 20 0.64 1.5e+04 -2.5 1.8 5 10 328 333 328 333 0.94 6 20 2.6e-07 0.0061 17.9 12.6 1 19 339 357 339 357 0.99 7 20 1 2.4e+04 -3.2 0.4 1 9 382 389 382 389 0.62 8 20 1.3e-06 0.031 15.6 15.4 1 19 392 410 392 410 0.98 9 20 0.68 1.6e+04 -2.6 0.4 1 5 419 423 419 428 0.73 10 20 0.77 1.8e+04 -2.8 1.8 5 10 433 438 433 438 0.95 11 20 0.025 5.7e+02 2.0 16.3 3 18 446 461 444 462 0.91 12 20 2.7e-08 0.00062 21.1 14.1 1 18 471 488 465 489 0.93 13 20 0.9 2.1e+04 -3.0 9.6 9 18 535 544 526 545 0.90 14 20 0.043 1e+03 1.2 5.8 4 12 559 567 557 567 0.89 15 20 0.27 6.3e+03 -1.3 1.1 6 10 628 632 627 632 0.90 16 20 2.5e-06 0.057 14.8 7.3 1 12 638 649 638 649 0.97 17 20 0.33 7.6e+03 -1.6 2.1 15 18 662 665 661 666 0.83 18 20 0.00098 23 6.5 12.2 3 18 678 693 677 694 0.94 19 20 6.5e-06 0.15 13.4 12.5 1 17 748 766 748 768 0.86 20 20 1.9 4.4e+04 -4.0 1.6 6 10 798 802 797 802 0.88
Sequence Information
- Coding Sequence
- atgaaaaaacgagaaaaaatcaacaaagtacAAAATCCAAATGCTTGGGGCAATGTACAACAACCTCCAGTTCGACCGAAACCGGCGAAAAACCATCAAAATGCTGAAACAAAGTCGAATACAGTGAAAAACCAAGAAAAGTTTAATCAAGTACAAGCCAAGCATTTGGAAGCAGCTAGCAAGCTAATCAAAGACTATGAATCGAGTTCGGACGAAGAAGAAATAACGACGGGCAATGATATATTAAATTCAGTGTTTCAAAGTTATTCTGGGAATTCGGCTGATTTATCGAAGACCcaacaatttttagaaaacataTTTCAATCCGGATCGGCCACTTGTCTGATTTGTATCGGTGGTGTAAAACGAGCCGATGCAATATGGTCGTGCGAAAAatgctttacattttttcatCTGCAATGTATTCAAAGATGGTCAAATGATAGTGTGTCGTTGAAACAGATGAACATTTCAAGTTCCGATCACGGGTACTATAATAACATGGGAGTTTATGTGCCTAAAAAGTCGAGACCTATTGTTTGGGATTGTCCTAAATGTCGAACAACGTATAGTCCGGATCAAATTCCAAAGCATTATATATGCTTTTGCGCGAAAACAGTAAGTCCAGTCAATCATCTGTGGAACATCCCTCATTCATGTGGGGAAATGTGTGGTAAACCCCTGAAACCAGAATGTGGTCACAAATGTGTCCTGCTTTGTCATCCGGGTCCTTGTCCACCGTGTCCTCAAATTATAGCAGCACCATGTAAATGTGGAAAGTCTGCTCCGCGAACGGTTCGGTGCACTCAAAAATCGTGGAGctgtaataaaaaatgcaatatgaAGTTGGCATGTGGTATCCACGGATGCGAATTGCTTTGTCACGACAAAAACGAATGCCCTCCATGCAAAAAGAAAAGTAAACAAACGTGTATTTGTGGAGATAGTGTTGAGGAACGAAATTGTTCACAATCGGGATGGAAATGCAAAAAAGTGTGCAATAAGATGTTCCCATGTGGTCTTCATAAATGTGAAAAAGTTTGTCACAACAATGATTGCGGTAACTGTCCGTATGGAGAACCGAGGTCTTGTCCGTGTGGAAAACAATTTTCTGTAGCGCCATGCTCAGAACAAGTCGAGTCATGTGGTGATACATGTCAAAGAGTTCAACCTTGTGGTGAGCACCACTGCGCTTTACGATGCCATAAAGGCGAATGCAGTCCATGTTCAATGATTGTCATGAAGAAATGTCGTTGTGGCTTACACTCTAAAGAGCTGCCGTGTTCAAAAACATTTACATGCGAATCAAAGTGCAAACAAATCAGGGAATGTAAAAAGCATCCGTGTAACCGCAAATGTTGTGATAATCAATGCCCACCATGCGACAAAATATGCGGCAAAACTTTATCGTGCACCAAACATAAATGCCAGTCTCTATGTCACAACGGACCATGCTACCCATGTAACCAAAAGTCGTTACTAAAATGTCGATGCGGAACCACCACCAAAGAAGTTCCATGCGGTCGTGAACGTAAATCAGCATCACCAAAATGTATGATGATGTGTAAAATTGCATCGAAATGTCATCACGAAAATCCGCATCGATGTCATAAGAACGAATGTCCGGTTTGTgttcaaatttgtaatttgtacaaTGACACTACGGGATGTGACCATCCGTGCCAGAGTCGGTGTCATGATGCCGTGACAGTTGTGGTCAcagatccaaattttaaaccggCTTTTCATTGGGAGGTAGCTGTCGAAACGTTCGAAGTTCGAAAATTACCACATCCGGCTTGTCAGGTAAAGGTTAAGGTGATATGTATAGGCGGACATGAAGAATGTCTTTGGCCGTGCTTTAATTCTAAACCGACAAGTTGCCAACGGGTATGTGGTCGAAAGTTACTATGTGGAAATCATGAATGTCAGCGCCTGTGTCATGAAGTCAAAGATTTGAAATCGACGGTGCAAGAAGAATCGTGCCAACCGTGTAACGAAGGATGTAAAGTTGCTCGGTCTGATGGTTGCATTCATCCATGTAAACGAGCGTGTCATTCTACTCCATGCGATACGTgcaacatcaacataaaaacgCAATGTCACTGTGGACTATCGCCAGTGTTTTACAAATGCGGTCAATTTTTCCGTCCAATCAAAGATGAAGAGGATCGAAAACAGTTAGccgaagaaaaagaaaaaattatgagCTGTGGTAATCGATGCAATCGAAACtatccATGCGGTCATCAATGTCGTGCATTATGCCACTCGGGAAAATGCCCGAATCCCAGTGAATGTAAGAAAAGAATTAAACTCTATTGTCAATGCAAGAATTTGAGGCAGGAAGTAACTTGCGATAAAATACgaaccgaaaatttccaaatgcaATGCAACGAGACATGCTCTATTAAGAAACAGGAAGTCAAAGAGGTGGCCAAACGAAAGGAGGCCGAACTCAAAAAACTGGAAGAGGAACGAAATCGAATTGAGTTGGAAGAATTTGAGAAGAAATACGCAAAGAAAAAGCCGCGTGAACGTAAAACTACGATAGTTGAAGATCAGGATGATAAAAATGTAGCGAAAATTGGCCTGATAGTTGCAGGTGGCCtagttttaatttcgtttgtaGTTTACCTgttgactaaataa
- Protein Sequence
- MKKREKINKVQNPNAWGNVQQPPVRPKPAKNHQNAETKSNTVKNQEKFNQVQAKHLEAASKLIKDYESSSDEEEITTGNDILNSVFQSYSGNSADLSKTQQFLENIFQSGSATCLICIGGVKRADAIWSCEKCFTFFHLQCIQRWSNDSVSLKQMNISSSDHGYYNNMGVYVPKKSRPIVWDCPKCRTTYSPDQIPKHYICFCAKTVSPVNHLWNIPHSCGEMCGKPLKPECGHKCVLLCHPGPCPPCPQIIAAPCKCGKSAPRTVRCTQKSWSCNKKCNMKLACGIHGCELLCHDKNECPPCKKKSKQTCICGDSVEERNCSQSGWKCKKVCNKMFPCGLHKCEKVCHNNDCGNCPYGEPRSCPCGKQFSVAPCSEQVESCGDTCQRVQPCGEHHCALRCHKGECSPCSMIVMKKCRCGLHSKELPCSKTFTCESKCKQIRECKKHPCNRKCCDNQCPPCDKICGKTLSCTKHKCQSLCHNGPCYPCNQKSLLKCRCGTTTKEVPCGRERKSASPKCMMMCKIASKCHHENPHRCHKNECPVCVQICNLYNDTTGCDHPCQSRCHDAVTVVVTDPNFKPAFHWEVAVETFEVRKLPHPACQVKVKVICIGGHEECLWPCFNSKPTSCQRVCGRKLLCGNHECQRLCHEVKDLKSTVQEESCQPCNEGCKVARSDGCIHPCKRACHSTPCDTCNINIKTQCHCGLSPVFYKCGQFFRPIKDEEDRKQLAEEKEKIMSCGNRCNRNYPCGHQCRALCHSGKCPNPSECKKRIKLYCQCKNLRQEVTCDKIRTENFQMQCNETCSIKKQEVKEVAKRKEAELKKLEEERNRIELEEFEKKYAKKKPRERKTTIVEDQDDKNVAKIGLIVAGGLVLISFVVYLLTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01460818; iTF_01052867; iTF_01458035; iTF_01459165; iTF_01054014; iTF_01054912; iTF_01457024;
- 90% Identity
- -
- 80% Identity
- -