Tver124406.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula vernalis
Gene Symbol
nfxl1
Assembly
GCA_958295665.1
Location
OY282560.1:11464077-11466796[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.88 8.7e+04 -3.0 1.4 14 19 184 189 184 189 0.86
2 20 0.52 5.1e+04 -2.3 0.7 4 10 220 226 220 226 0.92
3 20 7.2e-08 0.0071 19.7 17.3 1 19 234 251 234 251 0.99
4 20 1.4 1.4e+05 -3.6 1.8 5 10 276 281 276 281 0.94
5 20 1e-06 0.1 16.0 10.6 1 19 287 306 287 306 0.96
6 20 0.64 6.3e+04 -2.5 1.8 5 10 330 335 330 335 0.94
7 20 9.1e-07 0.09 16.2 12.0 1 19 341 359 341 359 0.99
8 20 2.5e-08 0.0024 21.2 13.3 1 19 394 412 394 412 0.98
9 20 0.19 1.8e+04 -0.8 0.7 1 5 421 425 421 430 0.75
10 20 0.77 7.6e+04 -2.8 1.8 5 10 435 440 435 440 0.95
11 20 0.025 2.4e+03 2.0 16.3 3 18 448 463 446 464 0.91
12 20 2.7e-08 0.0026 21.1 14.1 1 18 473 490 467 491 0.93
13 20 1.4 1.4e+05 -3.6 10.0 9 18 537 546 528 547 0.90
14 20 0.079 7.8e+03 0.4 6.7 3 12 560 569 559 569 0.89
15 20 1.2 1.2e+05 -3.4 0.9 6 10 630 634 629 634 0.86
16 20 7.5e-07 0.074 16.4 7.5 1 12 640 651 640 651 0.97
17 20 0.76 7.4e+04 -2.8 0.8 15 18 664 667 663 668 0.80
18 20 0.0015 1.5e+02 5.9 14.3 3 18 680 695 679 696 0.96
19 20 4.8e-05 4.7 10.7 13.2 1 17 750 768 750 770 0.86
20 20 1.9 1.9e+05 -4.0 1.6 6 10 800 804 799 804 0.88

Sequence Information

Coding Sequence
atGAGCAAACGCGATAAATCCAATAAAGTGCAGAGTCCCAGTGCTTGGGGTAACGTACAGCAATCACAGGGACGACCGAAACCGGCAAGAGGTAATCAAAATtcggaaataaaatcaaaccttgtcaaaaatcaagaaaaatttaaccaaGTACAAGCCAAACACTTGGAAGCCGCTAGTAAGTTAATCAAAGATTATGAATCGAGTTCGGATGAAGAAGAAATTACCGCTACCGCAGGAGATGATTTACTAAAAACCGTATTCCAAAGTTATGCTGGGAATTCGGCCGATCTCTCGAAGActcaacaatttttggaaaatttgttccAATCCGGGTCAGCAACATGTCTGATTTGTATCGGGGGTGTTAAACGTGCCGATGCGATATGGTCGTGCGAAAAGTGCTACACATTTTTCCATCTGCAATGCATTCAACGATGGTCTAATGATAGTGTGTCCCTGAAACAGATGAACATCACAAGCTCGGACCAAggatattacaataatatggGGATTTATGTGCCTAAAAAATCGAAACCTATTGTGTGGGACTGTCCAAAATGTCGCACTACTTACAGCCCGGATCAAATACCACGGCACTATATCTGCTTCTGTGGTAAAGAGATGAGTCCAGTTAATCATCTGTGGAATATTCCACATTCATGCGGGGAATCATGCGGTAAACCTCTAAAACCAGAATGTGGCCATAAATGTGTGTTACTTTGCCATCCAGGCCCTTGTCCACCATGTCCTCAAATTATATCGGTTTCGTGTAAGTGTGGAAATTCAGCATCACGAACGGTTCGATGCACTCAGAAATCCTGGACTTGTAATAAAAAGTGTAACTTGAAACTGGGATGTGGAATTCACAGTTGCGAATTGATTTGCCACGACAAAAACGAATGTCCGCCTTGTAAAAAGAAAAGTAAACAAAGATGTATATGTGGATCTAATTTTGAGGAACGTAATTGTTCACAATCGGGATGGAAATGTAAAAAAGTCTGCAACAAAATGTTCCCCTGTGGTCTTCATAATTGTGAGAAAATTTGTCATAACAATGATTGCGGTAATTGTCCGTATGGGGAGCCAAGATCTTGCCCATGTGGCAAACAATTTTCAGTTGCGCCTTGTTCGGAACAAGTGGAATCTTGTGGTGATACATGTCAGAAGACTCTGCCCTGCGGAGATCATAATTGCGCTGAACGTTGCCACAAAGGCGAGTGCAGTCCATGCTCGGCAATCGTTGAGAAAAAATGTCGATGTGGCCAACATTCTAAAGAGTTGCCATGCTCCAAAACGTTTACGTGCGAATCGAAATGCAAGCAAATCAGGGAATGCAAAAAACATCCATGTAACCGGAAATGTTGTGATAACCAGTGCCCACCATGTGACAAAGTGTGCGGAAAAACGTTATCATGCACCAAGCATAAATGCCAGTCACTATGTCACAACGGCCCCTGTTATCCATGCAACCAAAAGTCGATTATTAAATGTCGCTGTGGAAGTACCACCAAAGAAGTCCCTTGTGGCCGTGAACGCAAATCAGCTTCACCGAAATGTTTGCTGGCATGTAAAATTGCTTCAAAATGTCATCATGAAAATCCGCATCGTTGTCACCAGAATGATTGCCCCACTTGTGtccaaatttgtaatttatacaacGATACCACGGGATGCGAACATCCATGCGAAAGTCGATGTCACGATGCCGTCAAAGTATTGATCACCGATAAGAATTTTAAGCCGGCTCTTCCATGGGAGGTGCAGATGGAAACGTACGAAGTTCGAAAATTACCACATCCCGCTTGCCAAATCCAAGTTGCGGCTATATGTTTGGGTGGACACGAACAATGTTTATGGCCATGCTGGAATTCGAAGCCGACAAGTTGTCAACGGGCTTGTGGCCGAAACTTAAAATGTGGAAACCATAAGTGTCAACGGTTGTGTCATGAGGTGAAGGATTTAAAATCGACTGAGCAAGAAGAAACCTGCCAATCGTGCACAGAAGGTTGCAAAGTGGTACGGTCTGATGGTTGCATTCATCCCTGTAAACGAGCATGCCATCCTCCGCCATGCGACCCGTGCATCGCTAATATTAAAACGCAATGCCACTGTGGACTGTCGCCAGTATTCTACAAGTGTGGTCAATTTTTCCGTCCAACTAAAGATGAAGAGGATCGAATGCAATTGGTCGAAGAAAAGGAGAAAATTATGAGTTGCGGGAATCGATGCATTCGAAATTATCCATGCGGCCATCAATGCCGTGCATCATGTCACTCGGGAAAATGTCCAAATCCCGACCAATGTAAGAAAAAAGTTAAGCTCTACTGTCAGTGTAAGAATGTGAGACAGGAAGTAACGTGCGAGAAAATACGCACCGAAAATTTCCAAATGCAATGCAATGAGACATGCACAGCCAAAAAACAGGAACTCAAAGAGGCAGCCAAACGTAAGGAGGCGGAACTCAAAAAGCAGGAGGAGGACCGAAATCGGATCGAGTTGGAGGAATTTGAGAAGAAATACTCAAAGAAAAAGCCACGTGAACGTAAGACCGTAGTAGTTGAGGATCAGGaggataaaaatttaacaaaaattggcCTAATCGTTGCGAGTGGCTTAGTTGTAATTTCGTTTGTGGTTTATCTGttgactaaataa
Protein Sequence
MSKRDKSNKVQSPSAWGNVQQSQGRPKPARGNQNSEIKSNLVKNQEKFNQVQAKHLEAASKLIKDYESSSDEEEITATAGDDLLKTVFQSYAGNSADLSKTQQFLENLFQSGSATCLICIGGVKRADAIWSCEKCYTFFHLQCIQRWSNDSVSLKQMNITSSDQGYYNNMGIYVPKKSKPIVWDCPKCRTTYSPDQIPRHYICFCGKEMSPVNHLWNIPHSCGESCGKPLKPECGHKCVLLCHPGPCPPCPQIISVSCKCGNSASRTVRCTQKSWTCNKKCNLKLGCGIHSCELICHDKNECPPCKKKSKQRCICGSNFEERNCSQSGWKCKKVCNKMFPCGLHNCEKICHNNDCGNCPYGEPRSCPCGKQFSVAPCSEQVESCGDTCQKTLPCGDHNCAERCHKGECSPCSAIVEKKCRCGQHSKELPCSKTFTCESKCKQIRECKKHPCNRKCCDNQCPPCDKVCGKTLSCTKHKCQSLCHNGPCYPCNQKSIIKCRCGSTTKEVPCGRERKSASPKCLLACKIASKCHHENPHRCHQNDCPTCVQICNLYNDTTGCEHPCESRCHDAVKVLITDKNFKPALPWEVQMETYEVRKLPHPACQIQVAAICLGGHEQCLWPCWNSKPTSCQRACGRNLKCGNHKCQRLCHEVKDLKSTEQEETCQSCTEGCKVVRSDGCIHPCKRACHPPPCDPCIANIKTQCHCGLSPVFYKCGQFFRPTKDEEDRMQLVEEKEKIMSCGNRCIRNYPCGHQCRASCHSGKCPNPDQCKKKVKLYCQCKNVRQEVTCEKIRTENFQMQCNETCTAKKQELKEAAKRKEAELKKQEEDRNRIELEEFEKKYSKKKPRERKTVVVEDQEDKNLTKIGLIVASGLVVISFVVYLLTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01455351;
90% Identity
iTF_01457024;
80% Identity
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