Basic Information

Gene Symbol
nfxl1
Assembly
GCA_963691935.1
Location
OY829915.1:259369355-259372058[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.88 3e+04 -3.0 1.4 14 19 181 186 181 186 0.86
2 19 0.52 1.8e+04 -2.2 0.7 4 10 217 223 217 223 0.92
3 19 7.1e-08 0.0024 19.7 17.3 1 19 231 248 231 248 0.99
4 19 3.9e-06 0.13 14.1 9.9 1 19 284 303 284 303 0.96
5 19 0.64 2.1e+04 -2.5 1.8 5 10 327 332 327 332 0.94
6 19 4.7e-07 0.016 17.1 13.0 1 19 338 356 338 356 0.99
7 19 2.9e-08 0.00099 20.9 12.5 1 19 391 409 391 409 0.98
8 19 0.74 2.5e+04 -2.7 0.4 1 5 418 422 418 427 0.73
9 19 0.77 2.6e+04 -2.8 1.8 5 10 432 437 432 437 0.95
10 19 0.025 8.2e+02 2.0 16.3 3 18 445 460 443 461 0.91
11 19 2.7e-08 0.00089 21.1 14.1 1 18 470 487 464 488 0.93
12 19 0.088 2.9e+03 0.2 5.8 10 18 535 543 532 544 0.91
13 19 0.079 2.7e+03 0.4 6.7 3 12 557 566 556 566 0.89
14 19 0.4 1.3e+04 -1.9 1.2 5 11 614 620 611 621 0.84
15 19 0.27 9.1e+03 -1.3 1.1 6 10 627 631 626 631 0.90
16 19 2.5e-06 0.083 14.8 7.3 1 12 637 648 637 648 0.97
17 19 0.37 1.3e+04 -1.8 1.8 15 18 661 664 660 665 0.86
18 19 0.0021 71 5.4 15.5 3 18 677 692 676 693 0.94
19 19 1.9e-05 0.65 11.9 12.9 1 17 747 765 747 767 0.86

Sequence Information

Coding Sequence
ATGAGCAAACGCGATAAATCCAATAAAGTGCAAAACTCCAATCCGTGGGGTAATGTACAGCCACCCCAAGCCCGGCCGAAACCGGCAAAAAATCAAACTCCGGATTTAAAAACCAATTCAGTGAAAAATCAAGAAAAGTTTAAACAAGTGCAAGCTAAGCACTTGGAAGCAGCCAGCAAAGTCATCAAAGACTATGAGTCGAGTTCAGATGAAGAAGAAATAACATCAGGGGATGATATTCTTAAAACGGTGTTTCAAAGTTATGGCGGTAATTCGGCTGATTTATCAAAGACACAACAGTTTCTGGAGAATTTATTTCAGTCCGGATCGGCAACATGTTTGATTTGTATTGGAGGTGTTAAACGAGTTGACGCGATTTGGTCATGTGAAAAATGTTACACATTTTTTCATCTTCAGTGTATTCAGCGCTGGTCTAACGATAGTGTTTCCCAGAAACAGATGAACATCTCCAGCTCGGACCAAGGATACTACAATAATATGGGGATTTATGTGCCTAAAAAAACTAAACCTATTGTATGGGATTGTCCCAAATGTCGTACTACCTATAATCCAGACCAAATTCCCCGGCATTATATGTGTTTTTGTGGAAAGGAAGTTAGTCCTGTGAACCATTTATGGAATATTCCACATTCGTGTGGGGAATCGTGTGGTAAATTGCTAAAACCAGAATGCGGGCATAAGTGCGTGTTACTATGCCATCCAGGTCCGTGTCCACCGTGTCctcaaattatttcgatttcatGTAAATGTGGAAATTCAGCACTTCGAACGGTCCGGTGCACACAAAAATCTTGGGCATGCACAAAGAAATGTAACGAGAAATTGGGATGTGGAATTCATGTATGCGAATTAATCTGCCACGATAAAAACGAATGTCCTCCGTGCAAAAAGAAAAGTAAACAGCGATGTGAATGTGGATCAAATGTCGAAGAGCGTAATTGTTCCCAATCAGGATGGAAATGTAAAAAAGTATGCAACAAAATGTTTCAGTGTGGCCTTCATAAATGTGAAAAGGTTTGTCACAATAATAATTGTGGCAATTGTCCATACGGGGACCCGAGATCATGTCCCTGTGGCAAACAACTATCGGTTGCACCTTGCTCCGAACAGGTGGAATCGTGTGGTGATACGTGCCAGAAGATTTTGCCGTGTGGAGAACATAGATGTGCTCTGCGGTGCCACAAAGGCGAGTGCAGTCCCTGTTCAACGATAGTCGAGAAAAAATGCCGTTGTGGCGTGCATTCTAAAGAGTTGCCGTGCTCGAAAACGTTCACATGCGAATCGAAATGCAAACAAATTAGAGAATGCAAGAAACATCCGTGCAACCGAAAATGTTGCGATAATCAGTGTCCGCCTTGCGATAAAGTTTGTGGTAAAACACTGTCATGCACTAAACATAAATGCCAGTCATTGTGCCACAACGGCCCGTGCTATCCATGTAACCAAAAGTCTGTTATTAAGTGTCGATGTGGAGGCACTACCAAAGAAGTTCCGTGCGGCCGTGAACGTAAGTCAGCGTCACCAAAATGTATGATGCCTTGCAAGATTGCATCGAAATGTCATCATGATAATCCGCATCGATGCCATCAAAATGATTGTCCGACTTGCGTTCAAATTTGTAGTTTATACAACGACACTACAAAATGCGAGCATCCGTGCGAAAGTCGATGTCACGATGCCGTAAAAGTGTTGATCAcagataaaaatttcaaacctgcACTGCCATGGGAAGTGCAAACCGAGACGTACGAAGTTCAAAAATTGTCCCATCCCCCTTGTCAAATCAAGGTAGCTGCAGTATGTTTGGGCGGGCATGAAAAATGTCTATGGCCGTGCCATAATTCCACGCCGTCAAGTTGTCAACGAGTTTGTGGCCGAAAATTGAAATGCGGCAATCATGAATGTCAACGGTTGTGTCATGAAGTCAACAATTTGGAATCGACCGAGCAAGAGGAATCATGTCAACCGTGCGCTGAAGGTTGTAAAGTTGCCCGTTCAGATGGTTGTATTCATCCATGTAAACGGGCGTGTCACCCTCCTCCATGCGATCCAtgtaacacaaatattaaaacccAATGCCACTGTGGATTATCGCCAGTGTTCTACAAGTGCGGTCAATTTTACCGTCCAACCAAAGATGAGGAGGATCGAGCACAGTTGGCCGAAGAGAAAgagagaattttgagttgtggAAATCGATGCAATCGGAATTATCCCTGTGGCCATCAATGTCGTGCAACTTGTCATTCGGGAAAATGTCAAAATCCCGATCAATGTAAGAAAAAAGTCAAGCTCTATTGTCAATGCAAGAATTTACGACAGGAAGTAACTTGCGATAAAATACGccttgaaaatttccaaatgatATGTAAcgaaacctgcaccgccaaaaaaCAGGAAACAAAAGAAGCGGCGAAAAAGAAGGAGGCCGAACTCAAAAAACAGGAAGAGGAACGAAACCGAATTGAACTGGAGGAGTTTGAGAAAAAGTACGCAAAGAAAAAACCACGTGAACGTAAGATGGCAGTAGTCGAGGAGCAAAAGGattcaaattttactaaaattggcCTAATCGCAGCTGGTGGCTTAGTTTTAGTTTCATTTGTGGTTTACcttttaactaaataa
Protein Sequence
MSKRDKSNKVQNSNPWGNVQPPQARPKPAKNQTPDLKTNSVKNQEKFKQVQAKHLEAASKVIKDYESSSDEEEITSGDDILKTVFQSYGGNSADLSKTQQFLENLFQSGSATCLICIGGVKRVDAIWSCEKCYTFFHLQCIQRWSNDSVSQKQMNISSSDQGYYNNMGIYVPKKTKPIVWDCPKCRTTYNPDQIPRHYMCFCGKEVSPVNHLWNIPHSCGESCGKLLKPECGHKCVLLCHPGPCPPCPQIISISCKCGNSALRTVRCTQKSWACTKKCNEKLGCGIHVCELICHDKNECPPCKKKSKQRCECGSNVEERNCSQSGWKCKKVCNKMFQCGLHKCEKVCHNNNCGNCPYGDPRSCPCGKQLSVAPCSEQVESCGDTCQKILPCGEHRCALRCHKGECSPCSTIVEKKCRCGVHSKELPCSKTFTCESKCKQIRECKKHPCNRKCCDNQCPPCDKVCGKTLSCTKHKCQSLCHNGPCYPCNQKSVIKCRCGGTTKEVPCGRERKSASPKCMMPCKIASKCHHDNPHRCHQNDCPTCVQICSLYNDTTKCEHPCESRCHDAVKVLITDKNFKPALPWEVQTETYEVQKLSHPPCQIKVAAVCLGGHEKCLWPCHNSTPSSCQRVCGRKLKCGNHECQRLCHEVNNLESTEQEESCQPCAEGCKVARSDGCIHPCKRACHPPPCDPCNTNIKTQCHCGLSPVFYKCGQFYRPTKDEEDRAQLAEEKERILSCGNRCNRNYPCGHQCRATCHSGKCQNPDQCKKKVKLYCQCKNLRQEVTCDKIRLENFQMICNETCTAKKQETKEAAKKKEAELKKQEEERNRIELEEFEKKYAKKKPRERKMAVVEEQKDSNFTKIGLIAAGGLVLVSFVVYLLTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01455351;
90% Identity
iTF_01054014;
80% Identity
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