Basic Information

Gene Symbol
nfxl1
Assembly
GCA_932525705.1
Location
CAKOBH010001511.1:276192-278899[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1.3 2.7e+04 -3.0 1.4 14 19 181 186 181 186 0.86
2 19 0.78 1.6e+04 -2.2 0.7 4 10 217 223 217 223 0.92
3 19 1.1e-07 0.0022 19.7 17.3 1 19 231 248 231 248 0.99
4 19 3 6.2e+04 -4.7 2.5 5 10 273 278 273 278 0.93
5 19 3.9e-06 0.082 14.7 9.9 1 19 284 303 284 303 0.96
6 19 0.96 2e+04 -2.5 1.8 5 10 327 332 327 332 0.94
7 19 7.1e-07 0.015 17.1 13.0 1 19 338 356 338 356 0.99
8 19 4.4e-08 0.00091 20.9 12.5 1 19 391 409 391 409 0.98
9 19 1.4 2.9e+04 -3.1 0.4 1 5 418 422 418 427 0.72
10 19 1.2 2.4e+04 -2.8 1.8 5 10 432 437 432 437 0.95
11 19 0.037 7.6e+02 2.0 16.3 3 18 445 460 443 461 0.91
12 19 4e-08 0.00083 21.1 14.1 1 18 470 487 464 488 0.93
13 19 2.1 4.3e+04 -3.6 9.7 9 18 534 543 525 544 0.90
14 19 0.094 1.9e+03 0.7 6.8 3 12 557 566 556 566 0.90
15 19 0.41 8.5e+03 -1.3 1.1 6 10 627 631 626 631 0.90
16 19 3.7e-06 0.077 14.8 7.3 1 12 637 648 637 648 0.97
17 19 0.56 1.2e+04 -1.8 1.8 15 18 661 664 660 665 0.86
18 19 0.0032 65 5.4 15.5 3 18 677 692 676 693 0.94
19 19 0.0001 2.2 10.1 13.0 1 16 747 761 747 767 0.87

Sequence Information

Coding Sequence
ATGAACAAACGCGATAAATCCAATAAAGTGCAAAGCTCCAATCCATGGGGTAATGTGCAGCCAGCGCAAGCACGACCGAAACCGGCAAAAAATCAAACTCCGGATGTAAAAACCAATTCAGTGAAAAATCAAGAAAAGTTTAAACAAGTGCAAGCTAAGCACTTGGAAGCAGCCAGCAAAATCATTAAAGAATATGAATCGAGTTCAGATGAAGAAGAAATAACGTCAGGGGACGATATCCTTAAAACTGTGTTTCAAAGTTATGGTGGTAATTCGGCTGATTTGTCAAAGACACAACAGTTTCTGGAGAATTTATTTCAGTCCGGATCGGCAACATGTTTAATTTGTATTGGAGGTGTTAAACGAGTTGACGCGATTTGGTCATGTGAAAAATGTTACACATTTTTTCATCTCCAGTGTATTCAGCGCTGGTCTAACGATAGTGTATCCCAGAAACAGATGAACATCTCCAGCTCGGACCAAGGATACTACAATAATATGGGGATTTATGTGCCTAAGAAAACTAAACCTATTGTATGGGATTGTCCCAAATGTCGTACTACCTATAATCCAGATCAAGTTCCGCGGCATTATATGTGTTTTTGTGGAAAGGAAGTTAGTCCTGTGAACCATTTATGGAATATTCCACATTCATGTGGGGAATCGTGTGGTAAATCGCTAAAACCAGAATGTGGTCACAAGTGCGTGTTGCTATGCCATCCAGGTCCATGTCCACCGTGTCCTCAAATTATTTCCATTTCATGTAAATGTGGGAGTTCAGCACTCCGAACGGTCCGGTGCACACAAAAATCTTGGACATGTACAAAGAAATGTAACGAGAAACTGGGATGTGGAATTCACGTATGCGAATTACTCTGCCACGATAAAAACGAATGTCCCCCGTGCAAAAAGAAAAGTAAACAGCGGTGTGAATGTGGATCGAGTGTCGAAGAACGTAATTGCTCCCAATCAGGATGGAAATGTAAAAAAGTATGCAACAAAATGTTTCAGTGTGGCCTTCATAAATGTGAAAAGGTTTGTCATAATAATAATTGTGGTAATTGTCCATACGGGGAGCCGAGATCATGTCCCTGTGGCAAACAACTATCGGTTGCACCGTGCTCCGAACAGGTGGAATCGTGTGGCGATACGTGCCAGAAGATTTTGCCGTGTGGAGAGCATAGGTGTGCTCTGCGGTGCCACAAAGGCGAGTGTAGTCCCTGTTCAACGATAGTCGAGAAAAAATGCCGTTGTGGCGCGCATTCTAAAGAGTTGCCGTGCTCGAAAACATTCACATGCGAATCGAAATGCAAGCAAATTAGAGAATGCAAGAAACATCCATGCAACCGAAAATGTTGCGATAATCAATGCCCGCCTTGCGATAAAGTCTGTGGTAAAACACTGTCATGCACTAAACATAAATGCCAGTCATTGTGCCACAACGGCCCGTGTTATCCATGTAACCAGAAGTCTATTATTAAGTGCCGATGTGGAGGCACTACCAAAGAAGTTCCGTGCGGCCGAGAACGTAAGTCAGCGTCACCAAAATGTATGATGCCTTGCAAGATTGCATCGAAATGTCATCATGAAAATCCGCATCGGTGCCATCAAAATGATTGTCCGACTTGCATTCAAATTTGTAGTTTGTTCAACGACACTACAAAATGCAAGCATCCGTGCGAAAGTCGATGTCACGATGCTGTAAAAGTGTTGATCACAGATAAAAATTTCAAACCTGCACTGCCATGGGAGGTGCAAACCGAAACGTATGAAGTTCGAAAATTGCCACATCCCCCTTGTCAAATCAAGGTAGCTGCAGTATGTTTGGGCGGGCATGAAAAATGTATATGGCCATGCTATAATTCTGCACCGACAAGTTGTCAACGAGTTTGTGGTCGAAAATTAAAATGTGGTAATCATGAATGTCAACGGTTGTGTCATGAAGTTAACAATTTGGAGTCAATGGAGCAAGAGGAATCTTGTCAACCGTGCGCTGAAGGATGTAAAGTTGCCCGTTCCGATGGTTGTATTCATCCATGTAAACGGGCGTGTCATCCTCCTCCATGCGATCCATGTAACACCAATATTAAAACCCAATGCCACTGTGGATTATCGCCGGTGTTCTACAAGTGCGGTCAATTTTTCCGTCCAACCAAAAATGAGGAGGATCGAGCCCAGTTGGCCGAAGAGAAAGAGAGAATTTTGAGTTGTGGAAATCGCTGTAATCGGAATTATCCGTGTGGCCATCAATGTCGTGCAACTTGTCATTCGGGGAAATGTGAAAATCCCGAACAATGTAAGAAAAAAATCAAGCTCTATTGTCAATGCAAGAATTTGCGACAGGAAGTAACTTGCGATAAAATACGCCTTGAAAATTTCCAAATGATATGTAATGAAACCTGCACCGCCAAAAAACAAGAAACAAAAGAGGCGGCCAAAAGGAAAGAGGCCGAACTCAAAAAACAGGAAGAGGAACGAAACCGAATTGAATTAGAGGAGTTTGAGAAAAAGTACGCAAAGAAAAAACCACGTGAACGGAAGATGGCAGTAGTCGAGGAAGAAAAGGATTCAAATTTTACTAAAATTGGCCTAATCGCAGCTGGAGGCTTAGTTTTAGTTTCGTTTGTCGTTTATCTTTTAACTAAATAA
Protein Sequence
MNKRDKSNKVQSSNPWGNVQPAQARPKPAKNQTPDVKTNSVKNQEKFKQVQAKHLEAASKIIKEYESSSDEEEITSGDDILKTVFQSYGGNSADLSKTQQFLENLFQSGSATCLICIGGVKRVDAIWSCEKCYTFFHLQCIQRWSNDSVSQKQMNISSSDQGYYNNMGIYVPKKTKPIVWDCPKCRTTYNPDQVPRHYMCFCGKEVSPVNHLWNIPHSCGESCGKSLKPECGHKCVLLCHPGPCPPCPQIISISCKCGSSALRTVRCTQKSWTCTKKCNEKLGCGIHVCELLCHDKNECPPCKKKSKQRCECGSSVEERNCSQSGWKCKKVCNKMFQCGLHKCEKVCHNNNCGNCPYGEPRSCPCGKQLSVAPCSEQVESCGDTCQKILPCGEHRCALRCHKGECSPCSTIVEKKCRCGAHSKELPCSKTFTCESKCKQIRECKKHPCNRKCCDNQCPPCDKVCGKTLSCTKHKCQSLCHNGPCYPCNQKSIIKCRCGGTTKEVPCGRERKSASPKCMMPCKIASKCHHENPHRCHQNDCPTCIQICSLFNDTTKCKHPCESRCHDAVKVLITDKNFKPALPWEVQTETYEVRKLPHPPCQIKVAAVCLGGHEKCIWPCYNSAPTSCQRVCGRKLKCGNHECQRLCHEVNNLESMEQEESCQPCAEGCKVARSDGCIHPCKRACHPPPCDPCNTNIKTQCHCGLSPVFYKCGQFFRPTKNEEDRAQLAEEKERILSCGNRCNRNYPCGHQCRATCHSGKCENPEQCKKKIKLYCQCKNLRQEVTCDKIRLENFQMICNETCTAKKQETKEAAKRKEAELKKQEEERNRIELEEFEKKYAKKKPRERKMAVVEEEKDSNFTKIGLIAAGGLVLVSFVVYLLTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01455351;
90% Identity
iTF_01052867; iTF_01054912;
80% Identity
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