Basic Information

Insect: Tipula confusa
Gene Symbol: RREB1
Assembly: GCA_963556175.1
Location: OY744477.1:177187503-177192916[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00049 0.073 14.9 0.8 1 23 131 153 131 153 0.97

2 14 5.9e-05 0.0088 17.8 3.6 1 23 161 183 161 183 0.99

3 14 4.4 6.6e+02 2.4 0.7 1 23 296 320 296 320 0.82

4 14 0.017 2.5 10.0 4.2 2 22 326 346 326 346 0.94

5 14 1.2 1.7e+02 4.2 0.3 1 19 391 409 391 412 0.77

6 14 0.025 3.7 9.5 0.1 1 23 549 571 549 571 0.97

7 14 3.3e-05 0.005 18.5 0.9 1 23 580 602 580 602 0.99

8 14 0.00086 0.13 14.1 2.0 1 23 608 631 608 631 0.97

9 14 0.00099 0.15 13.9 2.1 1 23 973 996 973 996 0.95

10 14 2.1e-05 0.0032 19.2 0.4 2 23 1304 1325 1303 1325 0.98

11 14 0.15 22 7.0 6.3 1 23 1331 1354 1331 1354 0.97

12 14 2.9 4.3e+02 3.0 5.8 1 23 1435 1458 1435 1458 0.95

13 14 0.0088 1.3 10.9 0.5 3 23 1513 1533 1511 1533 0.96

14 14 0.0047 0.69 11.8 5.1 1 23 1539 1561 1539 1561 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00049	0.073	14.9	0.8	1	23	131	153	131	153	0.97
2	14	5.9e-05	0.0088	17.8	3.6	1	23	161	183	161	183	0.99
3	14	4.4	6.6e+02	2.4	0.7	1	23	296	320	296	320	0.82
4	14	0.017	2.5	10.0	4.2	2	22	326	346	326	346	0.94
5	14	1.2	1.7e+02	4.2	0.3	1	19	391	409	391	412	0.77
6	14	0.025	3.7	9.5	0.1	1	23	549	571	549	571	0.97
7	14	3.3e-05	0.005	18.5	0.9	1	23	580	602	580	602	0.99
8	14	0.00086	0.13	14.1	2.0	1	23	608	631	608	631	0.97
9	14	0.00099	0.15	13.9	2.1	1	23	973	996	973	996	0.95
10	14	2.1e-05	0.0032	19.2	0.4	2	23	1304	1325	1303	1325	0.98
11	14	0.15	22	7.0	6.3	1	23	1331	1354	1331	1354	0.97
12	14	2.9	4.3e+02	3.0	5.8	1	23	1435	1458	1435	1458	0.95
13	14	0.0088	1.3	10.9	0.5	3	23	1513	1533	1511	1533	0.96
14	14	0.0047	0.69	11.8	5.1	1	23	1539	1561	1539	1561	0.99

Sequence Information

Coding Sequence: ATGGAACGTCGCATATCAGCAAATTCCCAATCGTCAATCGAACCGATGGACATAAGtgtttcaaataaaacaacaagtTCTGATGGGAATAACACATCGTCAGCAATGGTAATAAGTAAAATAAGCGAATCAAATCATAGTGATATGGACAATGGTGGCATTGAATCGGAAGAAAATGACGAAAACATTGTACGACGTGAAAACCTTCGTTTACATAATTCTAGCCATATTGACACAAAAATGCTACGAAAAAAATTTCGTcttatgaataataataatagtagtaataataataataacaataataataataataataataataatagtaataataatatcgcGACCGATAAAAATCTCAGTATTGAAtcacataaaaatttggaaaattttcaatgtcatatttgctcaaaaaatttaacatcatcGATCGCACTCGTACGTCATTTACAAGCACATTGCCTAGATGGTGAGAGCCCATATAAATGTAGTTTGTGTAACATTACGTTTACCACCATGGCTAATATGCATCGACACATGAAAAGCCATAGACTCGATAAtgacaaaaacaataataacgacgaagatgatgatgatgatgaagattaTCTAAGTAACGATAATGATGAATATGAACGTGGTGTCTCATCGGATGTATCGTCCGGTAACGAAAGCCGTGACAGTGTTAACGATAATattcgaaataataataataacaataacaataacaataataattattcgaTTGGTAAACGAAAAAATGCGAACGACGACCATGACGAATTAATAAGCTTAAAgcgaaaaaattacaacaacaataatttgattaataaaaattttataaatcaaacaaGCCAAATGATGATGGCGGCacagcaacaaaaattttgttgccCCGTCTGCGATCGTAACGATTTCATTAGTATGCTAACGCTAGAAAATCACATGGATAAAGAGCATCCGAGTATACAAGCACGTTGCAGGCATTGTGACATTGTATTCAAAAGTCATAAAGCATTAAATGCCCACCGTTGCACAAAATCAACAAACCAAAGTATAACTCAGGGATTCAAAGATCTAacatttatagatttttctagtgaaaaatttcctataatcgCAAAATCGGTGTGTGAACAAACTATTCGCACGCCAATTACATCACAAAAATATGAATGTCCAAAATGTTATCGGGCGTTTCCTTGTTCATCCGCTGTCGATATTCATGTACGTGAGTGTGGTGGTGGAAATGATTCAGCGATTGTACAAGATTTTTCGATGCGTACTAGTAAACGAGTCGATAGCAGTGACATGTCGGATGATGATGAATGCAAACGAGATGATTTCTTTGCAAATCTAGacttacaaaacaaaacatcgaatacatttaatttatcgaaCAATAGTTCACCGCGATCAACTGGTTCGTCTGATATTATGAGAACTCCATCATTGCATCATCACTCAATCGACTCGAAAGATTTGGCTGATattcaatcaataattaatgTTACGTCTTCGGGTGGATTATTGCGACACTTAGAAAAACCATTAAAAGATCATTTAGGTCAACCAAAAGAAATCGAGGAGGAGGCCCAAGATGTGTTCACCGCcgaatttcgtaaaatgaaactACGTGGTGAATTTCCATGTAAATTGTGTACTGCAATTTTTCCTAATTTACGTGCACTTAAAGGTCATAATCGCGTGCATTTATCATCAGCCGGAGCTGGACCTTATCGTTGCAATATGTGTCCATACTCGATACATGACAAAGCAGCATTAATTCGACATATGAGAACACATAATGGTGATCGGCCGTATGAATGCGCAGTTTGCAATTATGCGTTTACAACAAAAGCTAATTGTGAACGCCATTTACGTAATCGACATGCTAAAACTACCCGAGAAGATGTTAAACGCGCTATAATTTATCATCCATCTGAAGATTCTTCAGCCGATGAACACCACAACAGTAAAAAACTGACAATGTTTAGCTCACCGGATTTTAATGAAGACGAAGACCGAATTCCAAAAGATTGTAGTACTCCTGTCTCATCAAGACTTCAAGATTTATTACTGCCCGacaatcatcatcatcgtctaGCGGCATCGCTTTCACCATCTCCATTAAAAATACAAGTAAAAAGTTTAGAGAAACTGACTCAACCTGAACCCGTACAATGTGAAACGAAAGATGAAATCGAggagaaaaaaaacatagaacCATTTATCGAAGATACAAATCGATCAGAGGATGAAGACGACGAGGAAGAAGTTAATGAAGAAACTAAACCGATCGATCTTTCTATGGATGCTCtagatttaagtaaaaaaactaaattcgatGAAAATCAAGCTTCGAATCTgctcaataataataacaataataatatcgaTGAACTATCATTCTTCGAAAAGAATAAACAGCTATTTATggcacaacaacaatttttaaacgaaactCTTCCTAAAATTGATCCTTCGCACTATCTACAACTGTCGCATTTATAtcgaaattttatgtttccacCAGCTGGTTTTCCAATTTCAccatttttaatgcaaaattctTTATTGCCACCACCAAATATGAATGAAGTCCAAGATATGATGCGCGGACAAATGTCGGGtggaaatttgatatttaatcaACAATCATCATCATCGCCTACACCGCCACTATCAATTAAATCACAACCACTCGACGATTCTCCATCGAAAAGTAGTAGTGCGACTGAATTGCACAAGTATAGCCCGATAGCAACACCTtccaataataacaataatacgatacaaaacaataatatacaggcacaaaataatcaaatgtcGAATGGACCAGTCAAAATGGTAATTAAAAATGGTGTTTTGATGCCAAAGCAAAAACAACGAAGGTATCGTACCGAACGTCCTTTTGCTTGCGAACACTGTAGTGCACGATTTACGCTACGATCGAATATGGAACGCCACATCAAACAGCAACATCCGCAGTTTTGGGCACAGCGACAACGAAGCGGGCATAATCTACTCCGCCGTGGAAGTGGACCACCTCCGCATTCaccacagcaacaacaacaacaacaaacgcaACCAAACCAACCACAGTCCATCAATCACATAATTCCACAAAGTGTTTCGCAATTACCAAATCAACCAAATTTCACATCAATCTCGGATCAAGTTAAATATGCCATCCTCGCTCAAcaacttaaatataacaaagatagtaataataaaatgggaATCCCATCGTCACTAGTACAATCCCTAAATAATAATAGCCAAATGatccaaaataacaacaactcgATGtatgaaaatctaaataatcaaACCACCACGACCAACGATGAGGAGGATGAACCACAATTAGTCATTGACGAAGACTCACAACCAGAAGACTTATCCAAATTGGAATCACCAAAGAAAACTGTCACACCTAGTAATGAAGTATACCATCAGAATAATGTAATCGAGGCAAAAAAAATTGCCGAAACTATATTAGAACAAGCCAAAAAAGTATCATCAGGTATGAACTCAACTGCAATGCAATCATCAGCTTCAACTATAAATTCGGATGCTGCTAAAgactttgatttaaaaattttaccaaatttaattgcCAAATCGGAAAATTTACCACCCAACTATAATAATGTATACCAGCCAAAAGATAATAATCACCGAGAAGAAGGTGATTTAGTATCAGTATCACGCTTGGTCGATAATgcctttggtaatttttttggtaataatgAAATCAGTACCCCAATGGAACATAGTGACGAAGACGGATTGGTAGCATCGGGTAGTGCCAATAATTCGGGACCGGAAGATCATGTTTCCGCGGTACCGGTTGaacctcaaaagaaaaaatcagCCTACAGTTTAGCACCAAACCGTGTCAAATGTCCATACTGTCAACGATCATTTCCATGGTCGAGTTCGCTGCGGAGGCATATTTTAACGCATACTGGACAAAAGCCATTCAAATGTTCACATTGTCCATTACTAttcacaacaaaatcaaattgtgaTCGTCATTTACTGCGCAAACACGGAAATGTTGAATCAGCCATGTCGGTCGCTGTGCCAATCGATGAAAATATTCCAGAGCCGATTATAAAGAAAGAACCAAAAGAATATATCGAAAATGAACCATATAAATCACCAAAAACGACAACGGTTATAAATCCAACTATAACATccattctaaatttaaatttaaatctaaaagcGGAGCTTATGAATAACAGTAATAACAATGCATCGAACGTTCCGATTAGTACAGAACTTCCATATAAATGTCATTTATGTGATGGTTCGTTTTCGGAACGAATGCAATGTTTAGAACACATTCGGCACTCACATGCACAAGAATTTGCATTACTATTGGCTAAAGGAGCGATCGACGCTGATTCAGAAAATAATTCGAATGCACAACTAGTGCAACATAATACCGAAACTAATATAGATGATGAGAATAAAGATGGAAAGGGAAAATATCCCGACTATGCTAATCGAAAGgtcATTTGTGCTTTCTGTGTCCGAAGATTTTGGTCGACCGAAGACTTACGGCGCCACATGCGAACTCATTCCGGCGAACGTCCATTTCAATGTGACATTTGTCTacgtaaatttacattaaaacataGTATGTTGCGACATCAGAAAAAACATAGTGCCCATAATAATagtcaacaacaaaataatagcgCATCTGATATGTCAGATGAAGAGCCACCAACCACAAACAATCCTAATAAATTACTCAACATTCCTGATTTAATACCAAAAGAGATGGCTCACAGTGCACAATGGAAATTAAGCCAACTGCAAGCAAAACTATTTGCTCAACACCACAACGAAAGTTCAAGCACaaataataatcatcatcaaGCTCCATCACCCCCATCATTTCTTATTTCACCATTTCTACAGCTTCAACAGCGCTTTGCTAGTTTGGCGCATGCCAATCTTGATGGCCATGTAAAAGATCATCATGATCAAGATGAATCGGATTTAATTGGTAATTTACTCGGCATTAGCGATCAAGGAATTTTAAACAGAGTATTGATATCTTCAGCTGATGAAGCAGCTAAATTATTAGGAGTGgacaaataa
Protein Sequence: MERRISANSQSSIEPMDISVSNKTTSSDGNNTSSAMVISKISESNHSDMDNGGIESEENDENIVRRENLRLHNSSHIDTKMLRKKFRLMNNNNSSNNNNNNNNNNNNNNSNNNIATDKNLSIESHKNLENFQCHICSKNLTSSIALVRHLQAHCLDGESPYKCSLCNITFTTMANMHRHMKSHRLDNDKNNNNDEDDDDDEDYLSNDNDEYERGVSSDVSSGNESRDSVNDNIRNNNNNNNNNNNNYSIGKRKNANDDHDELISLKRKNYNNNNLINKNFINQTSQMMMAAQQQKFCCPVCDRNDFISMLTLENHMDKEHPSIQARCRHCDIVFKSHKALNAHRCTKSTNQSITQGFKDLTFIDFSSEKFPIIAKSVCEQTIRTPITSQKYECPKCYRAFPCSSAVDIHVRECGGGNDSAIVQDFSMRTSKRVDSSDMSDDDECKRDDFFANLDLQNKTSNTFNLSNNSSPRSTGSSDIMRTPSLHHHSIDSKDLADIQSIINVTSSGGLLRHLEKPLKDHLGQPKEIEEEAQDVFTAEFRKMKLRGEFPCKLCTAIFPNLRALKGHNRVHLSSAGAGPYRCNMCPYSIHDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREDVKRAIIYHPSEDSSADEHHNSKKLTMFSSPDFNEDEDRIPKDCSTPVSSRLQDLLLPDNHHHRLAASLSPSPLKIQVKSLEKLTQPEPVQCETKDEIEEKKNIEPFIEDTNRSEDEDDEEEVNEETKPIDLSMDALDLSKKTKFDENQASNLLNNNNNNNIDELSFFEKNKQLFMAQQQFLNETLPKIDPSHYLQLSHLYRNFMFPPAGFPISPFLMQNSLLPPPNMNEVQDMMRGQMSGGNLIFNQQSSSSPTPPLSIKSQPLDDSPSKSSSATELHKYSPIATPSNNNNNTIQNNNIQAQNNQMSNGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWAQRQRSGHNLLRRGSGPPPHSPQQQQQQQTQPNQPQSINHIIPQSVSQLPNQPNFTSISDQVKYAILAQQLKYNKDSNNKMGIPSSLVQSLNNNSQMIQNNNNSMYENLNNQTTTTNDEEDEPQLVIDEDSQPEDLSKLESPKKTVTPSNEVYHQNNVIEAKKIAETILEQAKKVSSGMNSTAMQSSASTINSDAAKDFDLKILPNLIAKSENLPPNYNNVYQPKDNNHREEGDLVSVSRLVDNAFGNFFGNNEISTPMEHSDEDGLVASGSANNSGPEDHVSAVPVEPQKKKSAYSLAPNRVKCPYCQRSFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVAVPIDENIPEPIIKKEPKEYIENEPYKSPKTTTVINPTITSILNLNLNLKAELMNNSNNNASNVPISTELPYKCHLCDGSFSERMQCLEHIRHSHAQEFALLLAKGAIDADSENNSNAQLVQHNTETNIDDENKDGKGKYPDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHQKKHSAHNNSQQQNNSASDMSDEEPPTTNNPNKLLNIPDLIPKEMAHSAQWKLSQLQAKLFAQHHNESSSTNNNHHQAPSPPSFLISPFLQLQQRFASLAHANLDGHVKDHHDQDESDLIGNLLGISDQGILNRVLISSADEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01053825; iTF_01052676; iTF_01054760; iTF_01456904; iTF_01458989; iTF_01457903; iTF_01460654;
90% Identity: -
80% Identity: -