Basic Information

Insect: Tipula lateralis
Gene Symbol: RREB1
Assembly: GCA_963932295.1
Location: OZ010738.1:182885341-182890523[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00023 0.029 15.9 1.2 1 23 118 140 118 140 0.97

2 14 6.5e-05 0.0084 17.6 5.6 1 23 148 170 148 170 0.99

3 14 4.3 5.5e+02 2.4 0.7 1 23 281 305 281 305 0.82

4 14 0.016 2.1 10.0 4.2 2 22 311 331 311 331 0.94

5 14 2.8 3.6e+02 3.0 0.6 1 11 376 386 376 396 0.85

6 14 0.024 3.1 9.5 0.1 1 23 533 555 533 555 0.97

7 14 3.2e-05 0.0042 18.5 0.9 1 23 564 586 564 586 0.99

8 14 0.00084 0.11 14.1 2.0 1 23 592 615 592 615 0.97

9 14 0.00096 0.12 13.9 2.1 1 23 956 979 956 979 0.95

10 14 2.1e-05 0.0027 19.2 0.4 2 23 1293 1314 1292 1314 0.98

11 14 0.15 19 7.0 6.3 1 23 1320 1343 1320 1343 0.97

12 14 3.3 4.2e+02 2.8 6.6 1 23 1425 1448 1425 1448 0.95

13 14 0.0085 1.1 10.9 0.5 3 23 1503 1523 1501 1523 0.96

14 14 0.0045 0.58 11.8 5.1 1 23 1529 1551 1529 1551 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00023	0.029	15.9	1.2	1	23	118	140	118	140	0.97
2	14	6.5e-05	0.0084	17.6	5.6	1	23	148	170	148	170	0.99
3	14	4.3	5.5e+02	2.4	0.7	1	23	281	305	281	305	0.82
4	14	0.016	2.1	10.0	4.2	2	22	311	331	311	331	0.94
5	14	2.8	3.6e+02	3.0	0.6	1	11	376	386	376	396	0.85
6	14	0.024	3.1	9.5	0.1	1	23	533	555	533	555	0.97
7	14	3.2e-05	0.0042	18.5	0.9	1	23	564	586	564	586	0.99
8	14	0.00084	0.11	14.1	2.0	1	23	592	615	592	615	0.97
9	14	0.00096	0.12	13.9	2.1	1	23	956	979	956	979	0.95
10	14	2.1e-05	0.0027	19.2	0.4	2	23	1293	1314	1292	1314	0.98
11	14	0.15	19	7.0	6.3	1	23	1320	1343	1320	1343	0.97
12	14	3.3	4.2e+02	2.8	6.6	1	23	1425	1448	1425	1448	0.95
13	14	0.0085	1.1	10.9	0.5	3	23	1503	1523	1501	1523	0.96
14	14	0.0045	0.58	11.8	5.1	1	23	1529	1551	1529	1551	0.99

Sequence Information

Coding Sequence: ATGGAACGTCGCACATCGTCCAACTCTGAATCATCGATCGAACCGATGGACATAAGTGTTTCGAATAAGACAGCAAGTTCGGATAACACATCATCTGCAATGGTACTGAGTAAAATAAGCGAATCAAATCACAGCGATTCGGACAACGGTGGCATTGAATCAGaggaaaatgatgaaaatattgtaCGACGGGAAAATCTCCGTTTGCACAACAGTAGTAGCCATATCGATACGAAAATGCTACGAAAAAAATTTCGCCTCatgaataacaataataataatagtaatacgAATAATAATACAACGACCGATAAAAATCTCAGTATTGAATCacatgaaaatttggaaaattttcaatgtcatatttgctcaaaaaatttaacatcatCAACTGCCCTCGTACGTCATCTACAAGCGCATACCTTGGATATCGAAAGCCCGtataaatgtaatttgtgtCATATAACTTTTACTACGCTAGCAAATATGCATCGACACATGAAAAGCCATCGGCTCGAcaatgaaaaaaacaataacaataacgaAGACGATGATGAAGACTATCTAAGCAACGATAACGATGAGTACGAGCGTGGTGTTTCGTCGGACGCATCGTCGGGTAACGAGAGCCGCGACAGTGTTAACGATAATATacgaaataataacaataacaataataacaataataattattcgattggtaaacgaaaaaattcgaaCGACGACCATGACGATTTAATAAGCCTGAAGCGtaaaaactacaacaacaataatttaattaataaaaattttataaatcaaacaaGTCAATTGCTGGTGGCGGCtcaacaacagcaaaaatttTGTTGTCCCGTCTGCGATCGTAACGATTTTATAAGTATGCTTACACTCGAAAATCACATGGATAAAGAGCATCCGAGTATTCAAGCTCGTTGCCGCCACTGCGATATTGTATTCAAAAGTCATAAAGCATTGAATGCCCACCGCTGCACAAAATCAACAAACCAAAGTATAACTCAGGGATTTAAAGATTtaacatttattgatttttcgagTGAAAAATTTCCTATAATCGCTAAATCGATGTGCGAACAAACAATTCGCACACCCATTACATCGCAAAAATATGAATGCCCAAAATGCTATCGGGCATTTCCGTGCTCGACCGCAGTCGATATACATGTACGAGAATGCGGTGGTGGCAATGATTCGGCGATTGTACAAGATTTCTCGATACGAACTAATAAGCGCACCGATAGTAGCGATATCTCGGACGATGATGAATGCAAACGGGATGATTTCTTTGCAAATCTAGACTTACAAAATAAGACATCGAATACGTTTAATACATCAAACAATAGTTCACCTCGTTCGACTGTTTCGTCCGATATTATGAGAACTCCGTCTCTTCATCACTCCATGGACTCGAAAGATTTGGCTGATATTCAATCGATAATTAATGTAACATCGTCCGGTGGATTATTGCGTCACTTGGACAAATCGTTGAAAGATAATTTGGGCCAACCGAAAGAGGTTGAGGAAGAGGCACAAGATGCGTTTACGGCTGAATTTCGTAAAATGAAATTACGCGGTGAATTTCCTTGTAAATTGTGTACggcaatttttccaaatttgcgAGCGCTAAAGGGTCACAACCGTGTACATTTGTCGTCGGCCGGTGCGGGTCCATATCGTTGCAATATGTGCCCATACTCAATACATGACAAGGCGGCTTTGATTCGTCACATGAGAACGCATAATGGTGATCGGCCGTATGAATGTGCAGTTTGTAATTATGCATTCACAACGAAAGCTAATTGTGAACGCCATCTACGCAATCGCCATGCCAAGACTACACGAGAAGAAGTTAAACGTGCGATAATTTACCATCCATCGGAAGATTCTTCGGCTGATGAACATCACCATAGTAAAAAAATGACAATGTTTAGTTCACCAGATTTTAATGAAGACGAGGATCGCGTTCCAAAAGATCGAAGCACACCGGTTTCATCAAGACTTCAAGATTTATTGTTGCCTGATAATCATCATCAACGACTTGCTGCGTCACTTTCACCATCTCCATTGAAAATACAGGTGAAAAGTTTGGAGAAATTGATTCACCCAGAAGTTATTAAAAGCGAAGTAGATGATGAAATTGAAGAGAAAAAAGTTATTGAGACACACAACGACGAAACAAATCGATCagatgatgaagatgatgatgaagaaGGCAATGAAGAAACTAAACCGATTGATCTTTCAATGGATGCGCTAGATTTAagcaaaaaaactaaattcgACGATAACAAAGCATTGAATTTGCTTGGTAATAATAAcgatgagctatcgtttttcgaAAAGAATAAACAATTGTTTATGGCACAACAACAGTTTTTAAACGAAACCCTTCCAAAAATCGATCCTTCACACTACCTCCAACTATCCCATTTGTACCGGAATTTTATGTTTCCACCACCTGGTTTCCCGATTCCACCGTTTTTAATGCAAAATCCGTTATTGCAACCACCAAATTTGGGTGATGTACAAGACATGATGCGCGGCCAAATGTCTGgaggaaatttaatatttaatcaacAAACATCTTCATCACCAACACCACCGCCCCCACCACATTCAATCAAATCACAACCACTCGATGAATCTTCACCGAAGAATGGTAGTGCGACTGAGTCACACAAGTATAGTCCAATAGGAACACCAACTAATAACAACAGTAATACGtcacaaaacaataatgtacaggcacaaaataatcaaatatcgAATGGACCAGTGAAAATGGTAATTAAAAATGGTGTCTTGAtgccaaaacaaaaacaacgacGATATCGAACCGAACGTCCTTTTGCATGTGAACACTGTAGCGCACGTTTTACGCTTCGGTCAAATATGGAACGGCACATTAAACAGCAACATCCACAATTTTGGGCACAACGTCAACGAAGTGGACATAATTTACTTCGCCGTGGAAGTGGGCCACCACCACCTTcaccacaacaacaacagccgCAACAATCGCAACCATCCCCACAACATTCCATCAATCATATTCTGCCACAAGGTGTACCACAATTATCAAACCAACCAAATTTTACATCGATTTCGGAACAAGTAAAATACGCCATTCTCGCTCAACAACTCAAATACAATAAAGACAGTAGCAATAAAATGGGAATGTCATCGTCACTAGTACAATccctaaataataataataatagtcacATGCTcccgaataataataataataataattttaactcgATGTATGATAGTCATAATAATCAATCTACTAATAACAACGATGAGGAAGATGAACCTCAATTAGTCATTGATGAAGACTCACAACCCGAAGACTTATCCAAATTGGAATCACCAAAGAATGCTGCCACACCAAATAATGAACAACATCAGAATAATGTAATTGAGGCGAAAAAAATTGCCGAAACTATATTGGAACAAGCCAAAAAAGCGTCATCATGTGGTATGAATACTGCCGCAGTGCCAGCCACAACAATGAATTCAGAAATTCCTAGtaaagattttgatttaaaaatttcaccAAATTTAATTGCCAAAACGGAGAGCCTaccaaactataatttataccAATCGAAAGATAATCATCGCGAAGAAGGTGATTTGGTATCAGTATCACGATTAGTGAATAATGCGTATGGTAATTTTATTGGCAATAATGAAATTAGTACACCCATGGAGCACAGTGATGAAGATGGTTTAGTAGCATCGGGAAGCGCTTCCGAAAGTAATACTTCAGGATCAGAAGATCATGCATCGATCATTCCAGTCGAACCACAAAAGAAAAAATCGGCTTACAGTTTAGCACCGAATCGTGTCAAATGTCCATACTGTCAACGCTCGTTTCCATGGTCGAGTTCTTTGCGACGACACATTTTAACGCATACTGGACAGAAACCATTCAAATGCTCTCACTGCCCTTTGCTATTCACCACCAAATCAAATTGCGATCGCCATTTACTGCGCAAACATGGCAATGTCGAATCCGCAATGTCTGTGGCTGTTCCAATCGATGATAATATACCAGAACCAATCATAAAGAAAGAACCAAAAGAATATATCGAAAATGAACCGAATAAATCACCTAAAATGGCAATGAACCTAAATCAAACACCATCaattccaaatttaaatttggcaTTGAATTTAAAAGCCGAACTGATGAGTAATAATATTAGTAATGCGTCAAACATTCCGGCTAGCACCGAACTTCCATACAAGTGTCATTTATGTGATAGTTCGTTTTCAGAACGAATGCAATGTTTGGAACACATTCGGCATTCGCATTCACAAGAATTTGCTTTACTATTAGCCAAAGGGGCTATCGATCCTGAATCCGAAAATAATTCAACTGCACAACAAGTCCAACATACTAACGAAAATCACATGGACGAAGAGAATAAAGATGGAAAGGGAAAATATCCAGACTACGCTAATCGAAAGGTCATTTGTGCTTTCTGTGTCCGACGATTTTGGTCGACTGAAGATTTACGACGACATATGCGAACGCATTCTGGCGAACGTCCATTCCAGTGTGATATATGTTTAcgtaaatttacattaaaacaCAGTATGTTGCGACACCAAAAGAAGCATAGCGCCCATAATAGTAATCAGCAACAAAATAATAGTGCATCGGACATGTCGGATGAAGAAGCGCCCACCAcaatgatttcaaataaattgcaTAATATACCCGATTTGATACCAAAAGATATGGCGCACACTACACAGTGGAAATTAAGCCAATTGCAAGCAAAACTATATGCTCAACACCACAACGATAGTGCAGGcacaaataatagtaataataataataatcatcatcaAGCTCCATCGCCACCATCATTTCTTATTTCACCATTCCTCCAACTACAGCAGCGGTTTGCTAGCTTAGCGCATGCCGGACTCGACGGACATGCCAAGGATCATCATGATCAAGACGAATCGGATTTAATTGGTAATCTACTCGGTATCAGCGACCAAGGTATTTTAAATAGAGTTTTGGTATCGTCAGCCGATGAAGCTGCTAAATTATTAGgagttgataaataa
Protein Sequence: MERRTSSNSESSIEPMDISVSNKTASSDNTSSAMVLSKISESNHSDSDNGGIESEENDENIVRRENLRLHNSSSHIDTKMLRKKFRLMNNNNNNSNTNNNTTTDKNLSIESHENLENFQCHICSKNLTSSTALVRHLQAHTLDIESPYKCNLCHITFTTLANMHRHMKSHRLDNEKNNNNNEDDDEDYLSNDNDEYERGVSSDASSGNESRDSVNDNIRNNNNNNNNNNNYSIGKRKNSNDDHDDLISLKRKNYNNNNLINKNFINQTSQLLVAAQQQQKFCCPVCDRNDFISMLTLENHMDKEHPSIQARCRHCDIVFKSHKALNAHRCTKSTNQSITQGFKDLTFIDFSSEKFPIIAKSMCEQTIRTPITSQKYECPKCYRAFPCSTAVDIHVRECGGGNDSAIVQDFSIRTNKRTDSSDISDDDECKRDDFFANLDLQNKTSNTFNTSNNSSPRSTVSSDIMRTPSLHHSMDSKDLADIQSIINVTSSGGLLRHLDKSLKDNLGQPKEVEEEAQDAFTAEFRKMKLRGEFPCKLCTAIFPNLRALKGHNRVHLSSAGAGPYRCNMCPYSIHDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREEVKRAIIYHPSEDSSADEHHHSKKMTMFSSPDFNEDEDRVPKDRSTPVSSRLQDLLLPDNHHQRLAASLSPSPLKIQVKSLEKLIHPEVIKSEVDDEIEEKKVIETHNDETNRSDDEDDDEEGNEETKPIDLSMDALDLSKKTKFDDNKALNLLGNNNDELSFFEKNKQLFMAQQQFLNETLPKIDPSHYLQLSHLYRNFMFPPPGFPIPPFLMQNPLLQPPNLGDVQDMMRGQMSGGNLIFNQQTSSSPTPPPPPHSIKSQPLDESSPKNGSATESHKYSPIGTPTNNNSNTSQNNNVQAQNNQISNGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWAQRQRSGHNLLRRGSGPPPPSPQQQQPQQSQPSPQHSINHILPQGVPQLSNQPNFTSISEQVKYAILAQQLKYNKDSSNKMGMSSSLVQSLNNNNNSHMLPNNNNNNNFNSMYDSHNNQSTNNNDEEDEPQLVIDEDSQPEDLSKLESPKNAATPNNEQHQNNVIEAKKIAETILEQAKKASSCGMNTAAVPATTMNSEIPSKDFDLKISPNLIAKTESLPNYNLYQSKDNHREEGDLVSVSRLVNNAYGNFIGNNEISTPMEHSDEDGLVASGSASESNTSGSEDHASIIPVEPQKKKSAYSLAPNRVKCPYCQRSFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVAVPIDDNIPEPIIKKEPKEYIENEPNKSPKMAMNLNQTPSIPNLNLALNLKAELMSNNISNASNIPASTELPYKCHLCDSSFSERMQCLEHIRHSHSQEFALLLAKGAIDPESENNSTAQQVQHTNENHMDEENKDGKGKYPDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHQKKHSAHNSNQQQNNSASDMSDEEAPTTMISNKLHNIPDLIPKDMAHTTQWKLSQLQAKLYAQHHNDSAGTNNSNNNNNHHQAPSPPSFLISPFLQLQQRFASLAHAGLDGHAKDHHDQDESDLIGNLLGISDQGILNRVLVSSADEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01455207;
90% Identity: iTF_01458989;
80% Identity: -