Basic Information

Insect: Tipula vernalis
Gene Symbol: RREB1
Assembly: GCA_958295665.1
Location: OY282560.1:359515669-359520892[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00054 0.3 14.9 3.0 1 23 126 148 126 148 0.97

2 14 0.00026 0.14 15.9 5.4 1 23 156 178 156 178 0.99

3 14 5 2.8e+03 2.4 0.7 1 23 293 317 293 317 0.82

4 14 0.019 11 10.0 4.2 2 22 323 343 323 343 0.94

5 14 3.3 1.8e+03 3.0 0.6 1 11 388 398 388 408 0.85

6 14 0.028 16 9.5 0.1 1 23 546 568 546 568 0.97

7 14 3.8e-05 0.021 18.5 0.9 1 23 577 599 577 599 0.99

8 14 0.00098 0.55 14.1 2.0 1 23 605 628 605 628 0.97

9 14 0.0011 0.63 13.9 2.1 1 23 970 993 970 993 0.95

10 14 2.4e-05 0.013 19.1 0.4 2 23 1299 1320 1298 1320 0.98

11 14 0.17 95 7.0 6.3 1 23 1326 1349 1326 1349 0.97

12 14 0.99 5.5e+02 4.6 3.3 1 23 1429 1452 1429 1452 0.93

13 14 0.01 5.5 10.9 0.5 3 23 1507 1527 1505 1527 0.96

14 14 0.0053 2.9 11.8 5.1 1 23 1533 1555 1533 1555 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00054	0.3	14.9	3.0	1	23	126	148	126	148	0.97
2	14	0.00026	0.14	15.9	5.4	1	23	156	178	156	178	0.99
3	14	5	2.8e+03	2.4	0.7	1	23	293	317	293	317	0.82
4	14	0.019	11	10.0	4.2	2	22	323	343	323	343	0.94
5	14	3.3	1.8e+03	3.0	0.6	1	11	388	398	388	408	0.85
6	14	0.028	16	9.5	0.1	1	23	546	568	546	568	0.97
7	14	3.8e-05	0.021	18.5	0.9	1	23	577	599	577	599	0.99
8	14	0.00098	0.55	14.1	2.0	1	23	605	628	605	628	0.97
9	14	0.0011	0.63	13.9	2.1	1	23	970	993	970	993	0.95
10	14	2.4e-05	0.013	19.1	0.4	2	23	1299	1320	1298	1320	0.98
11	14	0.17	95	7.0	6.3	1	23	1326	1349	1326	1349	0.97
12	14	0.99	5.5e+02	4.6	3.3	1	23	1429	1452	1429	1452	0.93
13	14	0.01	5.5	10.9	0.5	3	23	1507	1527	1505	1527	0.96
14	14	0.0053	2.9	11.8	5.1	1	23	1533	1555	1533	1555	0.99

Sequence Information

Coding Sequence: ATGGATCGTCGCATATCAACCAATTCCGAATCATCGATTGAACCGATGGACGTAAGTGTTTCGAATAAAACAACAAGTTCGGACGGTACAAATAATACATCATCTGCAATGGCAATAAGTAAAATGAGCGAGCCAAATCATAGTGAATCGGATAATGGTGGTATTGAATCggaagaaaatgatgaaaatattgTAAGACGTGAAAATTTGCGTTTGCACAATAGTAGTAGCCACATTGATACGAAAATGCTGCGAAAAAAATTCCGTctcatgaataataataataataataataataccaacaataataataatagtaataatacgGCGACCGATAAAAATCTCAGTATTGAATCACatggaaatttggaaaattttcaatgtcaTATTTGCTCAAAACATTTAACAACATCGACCGCATTGGTACGCCATCTGCAAGCGCATAGCTTAGAGAGTGAAAGCCCTTACAAATGTAATTTGTGTCATATTACCTTCACCACCTTGGCTAATATGCACCGGCACTTGAAAAGCCATAGGCTCGATAatgacaaaaacaataataatgatgaGGATGATGAAGATTATCTTAGTAATGACAATGAAGAATATGAACGTGGTGTCTCATCGGATGCTTCGTCGGGTAACGAAAGCCGCGACAGTGTTAATGATAAtatacgaaataataataataataatagtaatagtaacaacaataataattattcgatTGGTAAACGAAAAAATGCGAATGACGACCATGACGATTTAATAAGCCTGAAGCGTAAAAACTACAATAAcaataacttaattaataaaaattttataaatcaaacaagTCAAATGCTGGTGGCAGctcaacaacagcaacaacaaaaattttgttgccCCGTTTGCGATCGTAACGATTTTATTAGCATGCTCACCTTAGAAAATCATATGGACAAGGAACATCCGAGTATACAAGCACGATGTCGTCATTGCGACATTGTATTTAAAAGTCACAAAGCATTAAATGCCCACCGTTGCacaaaatcaacaaatcaaAGTATAACACAGGGATTTAAAGATTTAACATTTATCGATTTTTCAAGTGAAAAATTTCCTATAATTGCGAAATCAGTGTGCGAACAAACAATTCGTACACCAATAACATCTCAAAAATATGAATGTCCGAAATGTTATCGCGCTTTTCCATGTTCGACCGCGGTTGATATACATGTACGTGAATGCGGCGGCGGTGGAAATGATTCAGCAATTGTTCAAGATTTTTCTATGCGTACTAATAAACGCGCCGACAGCAGTGACATTTCGGACGATGACGAATGCAAACGTGACGATTTCTTTGCTAACCTAGACTTACAGAATAAGACGTCGAATACATTTAATACATCGAACAATAGTTCACCCCGATCGACTGTTTCATCTGATATTATGAGAACTCCATCTCTACATCACTCGATGGACTCGAAAGATTTGGCTGATATTCAATCGATAATTAATGTAACGTCATCTGGTGGATTATTGCGACACTTGGACAAACCGTTAAAAGATCACTTAGGGCAACCAAAAGAGATCGAGGAAGAGGCACAAGACGTATTCACCGCTGAATTCCGAAAAATGAAGCTACGCGGTGAATTCCCCTGTAAATTGTGTACCGCAATTTTTCCTAATTTGAGAGCACTCAAAGGGCACAATCGTGTACATCTATCTTCAGCGGGCGCCGGTCCTTATCGGTGCAATATGTGTCCTTATTCGATACATGATAAAGCGGCTTTAATTCGTCACATGAGAACACACAACGGTGATCGCCCTTATGAATGTGCAGTTTGTAATTATGCTTTTACGACCAAAGCCAATTGTGAACGCCACCTACGTAATCGTCATGCTAAAACTACAAGAGATGAAGTTAAACGGGCGATCATTTATCATCCATCAGAGGACTCATCAGCTGATGAACACCATCACAGTAAAAAGATGACAATGTTTAGTTCACCAGATTTTAATGAGGATGAAGATCGAATCCCAAAAGATCGAAGCACTCCAGTCTCATCAAGGCTTCAAGATTTATTATTACCTGATAATCATCATCAACGTTTAACTTCATCGCTTTCGCCTTCACCATTGAAAATTCAAGTGAAAAGTTTAGAGAAATTGATTCACACAGAAACCATTAAAACCGAGGTAGAAGAAGAAATCGATGAGAAAAAAGTCGATGTACCTAATAATGATGATACAAATCGATCCGAAGATGAAGACGACGAGGATGAAGAAGCGAATGATGAAACAAAACCAATCGATCTTTCTATGGATGCTCTAGATTTAagcaaaaaaactaaattcgatGAAAATAAAGCATTAAATCTGATCAACAATAACAACGATGATCTATCATTCTTCGAAAAGAATAAACAACTGTTTATGgcacaacaacaatttttaaacgaaaCCCTTCCAAAAATCGATCCCTCACACTATTTGCAACTATCCCATTTGTatcgaaattttatgtttccaCCGCCTGGTTTCCCGCTTCCACCGTTTTTAATGCAAAATCCTTTATTGCAACCACCAAATATGGGTGAAGTGCAGGACATAATGCGCGGCCAAATGTCTGgaggaaatttaatatttaatcaacAATCATCTTCGTCGCCAACACCACCACTTTCAATCAAATCACAACCACTCGATGATTCTCCATCGAAAAGTGGTAGTGCGACTGAGTCACACAAGTATAGCCCAATAGCAACCCCAACAAATACTAACAATAATAcgccacaaaataataataataataataatcaggtacaaaataatcaaatgtCGAATGGGCCAGTTAAAATGGTTATAAAAAATGGTGTCTTGAtgccaaaacaaaaacaacgaaGATATCGCACCGAACGTCCATTTGCATGTGAGCACTGTAGCGCACGATTTACATTACGTTCGAACATGGAACGGCACATTAAACAGCAGCATCCACAATTTTGGGCTCAGCGTCAACGAAGTGGACATAATCTGTTACGTCGTGGAAGCggaccaccaccaccaccttCTCCTCAACAACAGCCGCAACAACAATCGCAACCATCTCCACAGCAATCCATCAATCATATGATCCCACAGGGTGTACCGCAATTAACAAATCAATCGAATTTCACATCGATCTCTGATCAAGTAAAATATGCCATTCTCGCTCAACAACTCAAATACAATaaagatagtaataataaaatgggaATGCCATCGTCATTAGTACAATCCCTAAATAATCATAGTCATATGCGCCCGAACAATAATAACAACTCGATATatgcaaatcaaaataatcaatctaCTAACAATGATGAGGAAGATGAACCTCAATTAGTCATCGACGAAGACTCACAACCGGAAGACTTATCCAAATTGGAATCACCAAAGAATGCTGCCACACCAAATAATGAATTACACCATAATAATGTAATTGAGGCGAAAAAAATTGCCGAAACTATATTGGAACAAGCCAAAAAAGCGTCATCTGGTATGAACACTGCTTCAGTTCCACCAACAACTATAAATCCGGAAACTACTaaagattttgatttaaaaatttcaccaaatttaattgccaaatcagaaaatttatcaaactatAATCTATACCAAACGAAAGATAATCATCGGGAAGAAGGTGATCTGGCATCGGTATCAAGATTGGTAGATAATgcgtttggtaatttttttggcaATAATGAAATTAGCAcaccaatggaacacagtgatgaAGATGGTTTAGTGGCATCGGGCAGTGCGTCCGAAAGTAACACTTCAGGACCTGAAGATCATGCGTCTGCCATACCAATTGAaccacaaaagaaaaaatcggcTTACAGTTTAGCACCAAATCGTGTCAAGTGTCCATATTGTCAACGTTCGTTTCCATGGTCCAGCTCTTTGCGGAGACATATTTTAACACATACTGGGCAAAAACCATTCAAATGTTCGCACTGTCCATTACTTTTCACAACGAAATCAAATTGTGATCGTCATTTACTGCGCAAACACGGAAATGTCGAATCAGCCATGTCAGTCGCTGTGCCAATCGATGAAAATATTCCCGAACCGATAATAAAGAAAGAACCAAAGGAATATATCGAAAATGAACCGAATAAATCACCAAAAATGACAACCATCATAAATCAAGCCGCATccattccaaatttaaatttagcattGAATTTAAAAGCTGAGCTCATGAATAGTAATAATACATCAAACAATTCTATTAGTACCGAACTTCCATACAAGTGTCATTTATGCGATGGTTCATTTTCGGAACGAATGCTATGTTTAGAACATATTCGCAATTCACATGCACAAGAATTTGCATTACTTTTGGCCAAAGGTGCTATTGATGCagattcagaaaataattcaaatgtaCAACAAGCCCAACATAGTAACGAAAATAATATGGACGAAGATAATAAAGAGGGAAAAGGGAAATATCCAGACTACGCTAATCGAAAGGTCATTTGTGCTTTCTGTGTCCGAAGATTTTGGTCGACGGAAGATTTACGGCGACATATGCGAACTCATTCCGGGGAGCGCCCATTCCAATGTGACATTTGTTTAcgtaaatttacattaaaacacAGTATGTTGCGACACCAGAAGAAGCATAGTGCACATAATaataaccaacaacaaaataatagtgCATCGGATATGTCGGATGAAGAACCGCCAACCACAATGATTCCAAATAAATTACTCAACATTCCTGATTTAATACCAAAAGACATAGCACACAGTACACAATGGAAATTAAGCCATTTACAAGCAAAACTATTTGCTCAACACCACAACGAAAGTGCAggcacaaataataataataataatagtaatcatcatcatcatcatcatcatcaagctCCATCCCCACCATCATTTCTTATTTCACCATTTCTGCAGTTGCAACAGCGTTTTGCTAGTTTAGCGCACGCCGGACTTGATGGACACGCGAAAGATCATCATGATCAAGATGAATCGGATTTAATTGGTAATCTACTCGGCATAAGTGATCAAGGTATTTTAAATAGAGTTTTGGTATCATCAGCTGATGAAGCTGCTAAATTGCTAggagttgaaaaataa
Protein Sequence: MDRRISTNSESSIEPMDVSVSNKTTSSDGTNNTSSAMAISKMSEPNHSESDNGGIESEENDENIVRRENLRLHNSSSHIDTKMLRKKFRLMNNNNNNNNTNNNNNSNNTATDKNLSIESHGNLENFQCHICSKHLTTSTALVRHLQAHSLESESPYKCNLCHITFTTLANMHRHLKSHRLDNDKNNNNDEDDEDYLSNDNEEYERGVSSDASSGNESRDSVNDNIRNNNNNNSNSNNNNNYSIGKRKNANDDHDDLISLKRKNYNNNNLINKNFINQTSQMLVAAQQQQQQKFCCPVCDRNDFISMLTLENHMDKEHPSIQARCRHCDIVFKSHKALNAHRCTKSTNQSITQGFKDLTFIDFSSEKFPIIAKSVCEQTIRTPITSQKYECPKCYRAFPCSTAVDIHVRECGGGGNDSAIVQDFSMRTNKRADSSDISDDDECKRDDFFANLDLQNKTSNTFNTSNNSSPRSTVSSDIMRTPSLHHSMDSKDLADIQSIINVTSSGGLLRHLDKPLKDHLGQPKEIEEEAQDVFTAEFRKMKLRGEFPCKLCTAIFPNLRALKGHNRVHLSSAGAGPYRCNMCPYSIHDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSSADEHHHSKKMTMFSSPDFNEDEDRIPKDRSTPVSSRLQDLLLPDNHHQRLTSSLSPSPLKIQVKSLEKLIHTETIKTEVEEEIDEKKVDVPNNDDTNRSEDEDDEDEEANDETKPIDLSMDALDLSKKTKFDENKALNLINNNNDDLSFFEKNKQLFMAQQQFLNETLPKIDPSHYLQLSHLYRNFMFPPPGFPLPPFLMQNPLLQPPNMGEVQDIMRGQMSGGNLIFNQQSSSSPTPPLSIKSQPLDDSPSKSGSATESHKYSPIATPTNTNNNTPQNNNNNNNQVQNNQMSNGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWAQRQRSGHNLLRRGSGPPPPPSPQQQPQQQSQPSPQQSINHMIPQGVPQLTNQSNFTSISDQVKYAILAQQLKYNKDSNNKMGMPSSLVQSLNNHSHMRPNNNNNSIYANQNNQSTNNDEEDEPQLVIDEDSQPEDLSKLESPKNAATPNNELHHNNVIEAKKIAETILEQAKKASSGMNTASVPPTTINPETTKDFDLKISPNLIAKSENLSNYNLYQTKDNHREEGDLASVSRLVDNAFGNFFGNNEISTPMEHSDEDGLVASGSASESNTSGPEDHASAIPIEPQKKKSAYSLAPNRVKCPYCQRSFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVAVPIDENIPEPIIKKEPKEYIENEPNKSPKMTTIINQAASIPNLNLALNLKAELMNSNNTSNNSISTELPYKCHLCDGSFSERMLCLEHIRNSHAQEFALLLAKGAIDADSENNSNVQQAQHSNENNMDEDNKEGKGKYPDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHQKKHSAHNNNQQQNNSASDMSDEEPPTTMIPNKLLNIPDLIPKDIAHSTQWKLSHLQAKLFAQHHNESAGTNNNNNNSNHHHHHHHQAPSPPSFLISPFLQLQQRFASLAHAGLDGHAKDHHDQDESDLIGNLLGISDQGILNRVLVSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01455207;
90% Identity: iTF_01458989;
80% Identity: -