Tcon006167.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744475.1:72565277-72567161[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7e-05 0.0025 19.5 0.2 1 23 49 74 49 74 0.96 2 15 0.81 1.2e+02 4.7 1.3 1 23 80 103 80 103 0.93 3 15 0.00039 0.058 15.2 0.1 1 23 122 144 122 144 0.96 4 15 0.00016 0.025 16.4 0.9 1 23 151 173 151 173 0.96 5 15 0.01 1.5 10.7 0.3 1 21 179 199 179 200 0.94 6 15 0.3 44 6.1 0.1 1 22 205 226 205 230 0.92 7 15 0.00012 0.017 16.8 1.5 1 23 240 262 240 262 0.98 8 15 2.9 4.4e+02 3.0 0.4 2 19 268 285 267 290 0.77 9 15 0.39 58 5.7 3.6 1 23 296 318 296 318 0.96 10 15 0.00037 0.056 15.2 1.3 1 23 328 350 328 350 0.97 11 15 0.0012 0.17 13.7 4.9 1 23 382 405 382 405 0.90 12 15 0.00014 0.02 16.6 1.1 1 23 410 434 410 434 0.97 13 15 9.3e-05 0.014 17.1 1.4 1 23 450 474 450 474 0.98 14 15 0.0023 0.35 12.7 2.2 1 21 479 499 479 500 0.93 15 15 0.44 65 5.6 0.3 2 21 514 533 513 534 0.94
Sequence Information
- Coding Sequence
- atgaataattttagtgTTGTTACATTAAATCAAGCCCAATCCATTAACGAGGTGGAGGCGGCCCCCAGTGCAACGCAAAAAACGGACAATAGCAACTCAGCAAAATCAAAATCCGATAAAAATGATAACATATCGAAAAACCAATACGAATGTCGAATCGAAGGTTGTGATAAAGCATTTACAAGTGCATCGGCCGTCAACAATCATATGAAACGAAAACATTTGGCCAAAAGCTTTTATCCATGCGACGAGTGTTCATCCAATTTTACCATACAACATGAACGTACCTTGCACAAAATTAAAGAGCACGAGGGAAGACGTTTTCAAATTTTACGTTTTCAAACGAAAAAAGATAATTCCGAGTATCCGTGTCCCGAGTGCAGTAAAGGTTTTTATACGTTAGACATGTTTGCCGAACATCGGATTTTACACGATTCCACAATTATCAAGTATACGTGTAAAGATTGTAGCAAAGAGTTTatatccgagaaaaaattaaaggatcATTCCATCGTACACCAAGAACGTACCATGTACAAATGTAATGTATGCGCTAAAGTATTTTTACGCAGTCAAACGCTTCAGTATCACCGATTGATCTGTAAAGCCGATTACCCGTGTGACGAGTGTGTCGATAGTTTTATGACCGAGGAAGCGCTGGTCAAACACAAAGAAACACTTTCGGTGCATGAAAAACGACATTCACTTCGTATGAATTACACGTGTCAAATATGCAAGGAAACGATATCGACCCaagccaaatttcaaaaacatatcaaaaatcATCTCGAAGTAAATCTCGAATGTCGTATTTGTAAAGAGAAATTCCAGAGTTTAGTCAAATATGGGTATCACAAGGCGGAAATGCATTCAATTATGCGGCCGTACGACTGTGTCCTGTGCCCCGATAAATTTTGTACGCGAAACGAACTTTTTCTGCATCTACACAATCATATCGATATGAACACGTCGACAAATATGTATCAATGTGAAAGCTGTGATATGAAATTTTCGCTCAAAGAAAATTATGAGAAACATCGTGGGTCGCATCGTAAAAATGATAATGTCGTGCTAGTCCAACCGTCACCACCACAAGAAGCATCGGACGGCCAACAAAATGTGAACGAcgaagaaaattcaaattttcactGTGACCAGTGTAATAAACGGTTTAATTACAAGTCATTGTTGTCACATCATAAAATTGCCGAACATGAAACCCGTTTGTATCCGTGTACGGTAGGTTTTtgtgatcaaaaatttgcaacACCCGACCAATTTAACGAACATCAACGGCACCATGAAAACGACGAAAATTTACTTGACGAATCACACGATACGCTACAGTTTAAGTGCAATATCGAAGGTTGTAAACGTTCGTTTGAATACGAAAGTCGTTTAAATAAGCATATGACGTCGCACGTCCTAAACGAATATAAATGCACGAAATGCGATCGCGTCTTTTATTCGCAATCGATATTCGAGCACCACTACAATTTATGTGAATGCAGCAATAGCAATTATTTTGGCGGTCCGgtcaaatgtaatatttgtcgGCAGCTATTCGAAAACGTGACTGTGTTGCAGAATCATCGAAAATTTTGCTGGGAAAATAGTAGTACGGCGAGTGACGATAAAACTAGACTGTCGAACGACGACAGTATTCAAAGTATTCGATCGATCGACAATTTACGTAGTCCTGAAAGTATGTTATCGGTCTATGTACAAAACGATTATGATTCGAATTTCCTTTCGGAATTGTAG
- Protein Sequence
- MNNFSVVTLNQAQSINEVEAAPSATQKTDNSNSAKSKSDKNDNISKNQYECRIEGCDKAFTSASAVNNHMKRKHLAKSFYPCDECSSNFTIQHERTLHKIKEHEGRRFQILRFQTKKDNSEYPCPECSKGFYTLDMFAEHRILHDSTIIKYTCKDCSKEFISEKKLKDHSIVHQERTMYKCNVCAKVFLRSQTLQYHRLICKADYPCDECVDSFMTEEALVKHKETLSVHEKRHSLRMNYTCQICKETISTQAKFQKHIKNHLEVNLECRICKEKFQSLVKYGYHKAEMHSIMRPYDCVLCPDKFCTRNELFLHLHNHIDMNTSTNMYQCESCDMKFSLKENYEKHRGSHRKNDNVVLVQPSPPQEASDGQQNVNDEENSNFHCDQCNKRFNYKSLLSHHKIAEHETRLYPCTVGFCDQKFATPDQFNEHQRHHENDENLLDESHDTLQFKCNIEGCKRSFEYESRLNKHMTSHVLNEYKCTKCDRVFYSQSIFEHHYNLCECSNSNYFGGPVKCNICRQLFENVTVLQNHRKFCWENSSTASDDKTRLSNDDSIQSIRSIDNLRSPESMLSVYVQNDYDSNFLSEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458879; iTF_01460530; iTF_01457785; iTF_01053684; iTF_01052524; iTF_01456704; iTF_01054622;
- 90% Identity
- -
- 80% Identity
- -