Tunc025441.1
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- -
- Assembly
- GCA_951394425.1
- Location
- OX596381.1:141758259-141760113[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 8.1e-06 0.0012 20.6 0.3 1 23 46 71 46 71 0.96 2 16 0.25 37 6.4 0.9 1 23 77 100 77 100 0.94 3 16 0.00013 0.02 16.7 0.1 1 23 119 141 119 141 0.96 4 16 1.9e-05 0.0028 19.4 0.5 1 23 148 170 148 170 0.96 5 16 0.011 1.7 10.7 0.3 1 21 176 196 176 197 0.94 6 16 0.28 42 6.3 0.1 1 23 202 224 202 224 0.93 7 16 7.3e-06 0.0011 20.7 1.7 1 23 229 251 229 251 0.98 8 16 0.00019 0.028 16.3 1.2 1 23 257 279 257 279 0.98 9 16 1.6 2.3e+02 3.9 0.3 2 19 285 302 284 307 0.77 10 16 2.3 3.3e+02 3.4 4.3 1 23 313 335 313 335 0.95 11 16 4.9e-05 0.0073 18.1 1.2 1 23 345 367 345 367 0.98 12 16 0.00015 0.023 16.6 2.0 3 23 394 415 392 415 0.95 13 16 0.043 6.3 8.9 0.4 1 23 420 444 420 444 0.96 14 16 4.9e-05 0.0072 18.1 1.2 1 23 460 484 460 484 0.98 15 16 0.033 4.9 9.2 2.2 1 19 489 507 489 510 0.87 16 16 0.063 9.3 8.3 0.2 2 21 523 542 522 543 0.94
Sequence Information
- Coding Sequence
- atgaataattttagtGTTGTTACATTAAATCAAGGTGGCTCCGCACAAATTCCAGGTGGTAGTGCGATTCAAACAATGGATATTGGTACCACCAACAAATCTAAACCACATAAAAATTCGATATCCAAAAATCAGTACGAGTGTCGTATTGAAGGATGTGATAAATCATTTACCAGTGCTTCTGCTGTAAACAATCACATGAAGCGTAAACACTTGGCCAAAAGTTTTTATCCGTGCGATGAGTGTTCTGCAAATTTTACCATACAACATGAGCGAACACTGCATAAAATTAAGGAGCACGAAGGTAgacgttttcaaatttcaagatTCCAAACGAAGAAAGATAATTCGGAGTATCCGTGCCCCGAGTGTAGTAAAGTTTTCTATACACTGGACATGTTTGCCGAACATCGAATTTTACACGATTCCACAATTATCAAGTATACGTGTAAAGATTGTGGCAAAGAGTTTATATcggagaaaaaattaaaagatcatTCTATCGTGCACCAAGAGCGAACCATGTACAAATGCAATGTATGCGCTAAAGTATTTCTTCGCAGTCAAACACTTCAATACCATCGACTAATTTGTAAAGCGGCTTATCTGTGTGATGAATGCGTAGATAGCTTTATGACAGAAGAAGCTCTGGCCAAACATAGATTATTTCATTCGGCGGCCAATTTCACCTGCAAGAAATGTAATAAAGTGTTTCCGAATCAGGAAAAACTTTCGGTGCATGAAAAACGACATTCGCTTCGTATCAACTACACTTGCCAAATATGCAAGGAAACGATATCAACGcaagcaaaatttcaaaaacatatcAAGGATCATCTGGAGGTGAATCTTGAGTGCCAAATTTGTAAAGAAAAATTTCAGAGCCTGGTTAAATACGGTTACCACAAAGCGGAGATGCATTCAATTATGCGGCCATACGATTGTGTGCTGTGCAGTGATCAATTTTGCACGCGGACCGATCTTTTTCTTCATTTACACAATCATATCGACATGAATACATCCACAAATATGTATCAATGTGAAAATTGTGATATAAAATTTTCGCTCAAAGAAAATTACGAGAAACACAGAGAATCCCATCGCAAAGATGACATCGTAGTATTAACACCGCCCGCCATTGAGCAGCAAACTGTCGAGGAAGAAAAATCCAATTTTGGCTGCGACCAGTGTGATAAAACGTTCAACTACAAATCATTATTGTCACATCATAAACTGATCGAACATGAAACGCGCTCGTATCCGTGCACAGTAGGATTTTGTGACCAACAATTTACATCGCCCGAATTTCGCAACGAGCATCAGCAGCAACACGAAATTGATATGAATTTACGAGACGAATCACAAGACACGCTACCATTCAAATGCAATATCGAAGGCTGTAAACGTTCGTTTGAATATGCGAGCCGCCTAAATAAGCATATGACCTCGCATGTTCTAAATGAATATAAATGCACCAAGTGCGATCGTATATTCTACTCTGAATCCATCTTTCAGCATCACTTCAATTTATGTGAATGCAGCAACAGCAATCAATGTGGCCCAGTCAGATGTAATATATGCCGTCAACTATTCGAAAATCCGACTGTGCTGCAAAATCATCGAAAATATTGTTGGGAAAATAGTAGTACCTTGAGCGAGGATAAAAGTATACTCTCGAATGACGATAGTATTCAGAGTATACGATCGATCGATAATTTACGTAGTCCTGAAAGTATTCTATCGGTTTATGTACAAAATGATTATGATTCAAATTTACTTCCGGAATTATAg
- Protein Sequence
- MNNFSVVTLNQGGSAQIPGGSAIQTMDIGTTNKSKPHKNSISKNQYECRIEGCDKSFTSASAVNNHMKRKHLAKSFYPCDECSANFTIQHERTLHKIKEHEGRRFQISRFQTKKDNSEYPCPECSKVFYTLDMFAEHRILHDSTIIKYTCKDCGKEFISEKKLKDHSIVHQERTMYKCNVCAKVFLRSQTLQYHRLICKAAYLCDECVDSFMTEEALAKHRLFHSAANFTCKKCNKVFPNQEKLSVHEKRHSLRINYTCQICKETISTQAKFQKHIKDHLEVNLECQICKEKFQSLVKYGYHKAEMHSIMRPYDCVLCSDQFCTRTDLFLHLHNHIDMNTSTNMYQCENCDIKFSLKENYEKHRESHRKDDIVVLTPPAIEQQTVEEEKSNFGCDQCDKTFNYKSLLSHHKLIEHETRSYPCTVGFCDQQFTSPEFRNEHQQQHEIDMNLRDESQDTLPFKCNIEGCKRSFEYASRLNKHMTSHVLNEYKCTKCDRIFYSESIFQHHFNLCECSNSNQCGPVRCNICRQLFENPTVLQNHRKYCWENSSTLSEDKSILSNDDSIQSIRSIDNLRSPESILSVYVQNDYDSNLLPEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01455131;
- 90% Identity
- -
- 80% Identity
- -