Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010736.1:108481504-108483356[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.9e-06 0.00051 21.4 0.3 1 23 46 71 46 71 0.96

2 16 0.23 29 6.4 0.9 1 23 77 100 77 100 0.94

3 16 0.00012 0.016 16.7 0.1 1 23 119 141 119 141 0.96

4 16 1.7e-05 0.0022 19.4 0.5 1 23 148 170 148 170 0.96

5 16 0.01 1.3 10.7 0.3 1 21 176 196 176 197 0.94

6 16 0.26 34 6.3 0.1 1 23 202 224 202 224 0.91

7 16 4.2e-06 0.00054 21.3 1.5 1 23 229 251 229 251 0.98

8 16 0.00058 0.075 14.6 1.4 1 23 257 279 257 279 0.98

9 16 2.9 3.8e+02 2.9 0.4 2 19 285 302 284 307 0.77

10 16 1.4 1.9e+02 3.9 3.6 1 23 313 335 313 335 0.95

11 16 4.2e-05 0.0055 18.2 1.3 1 23 345 367 345 367 0.98

12 16 4.9e-05 0.0063 18.0 1.4 1 23 392 415 392 415 0.89

13 16 0.82 1.1e+02 4.7 1.4 1 14 420 435 420 444 0.81

14 16 0.00011 0.014 16.9 1.1 1 23 460 484 460 484 0.98

15 16 0.0045 0.59 11.8 3.3 1 22 489 510 489 510 0.95

16 16 0.043 5.5 8.7 0.2 2 21 523 542 522 543 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.9e-06	0.00051	21.4	0.3	1	23	46	71	46	71	0.96
2	16	0.23	29	6.4	0.9	1	23	77	100	77	100	0.94
3	16	0.00012	0.016	16.7	0.1	1	23	119	141	119	141	0.96
4	16	1.7e-05	0.0022	19.4	0.5	1	23	148	170	148	170	0.96
5	16	0.01	1.3	10.7	0.3	1	21	176	196	176	197	0.94
6	16	0.26	34	6.3	0.1	1	23	202	224	202	224	0.91
7	16	4.2e-06	0.00054	21.3	1.5	1	23	229	251	229	251	0.98
8	16	0.00058	0.075	14.6	1.4	1	23	257	279	257	279	0.98
9	16	2.9	3.8e+02	2.9	0.4	2	19	285	302	284	307	0.77
10	16	1.4	1.9e+02	3.9	3.6	1	23	313	335	313	335	0.95
11	16	4.2e-05	0.0055	18.2	1.3	1	23	345	367	345	367	0.98
12	16	4.9e-05	0.0063	18.0	1.4	1	23	392	415	392	415	0.89
13	16	0.82	1.1e+02	4.7	1.4	1	14	420	435	420	444	0.81
14	16	0.00011	0.014	16.9	1.1	1	23	460	484	460	484	0.98
15	16	0.0045	0.59	11.8	3.3	1	22	489	510	489	510	0.95
16	16	0.043	5.5	8.7	0.2	2	21	523	542	522	543	0.94

Sequence Information

Coding Sequence: atgaataattttgaagttGTAAAACTACAtcaaaatagttcgacacaaaTTCCAAGTTGCAGTGATGTTCAAGAAACTAATACTAACACGACTACAAAATCCAAACCTAACAAAAATGATGTATCAAAAAATCAGTACGAGTGCCGGATTGAAGGGTGTGGTAAAACATTCACCAGTGCTTCGGCTGTCAATAACCACATGAAACGGAAACATTTGGCCAAGAGTTTTTATCCGTGTGACGAGTGCTCCGCAAATTTTACCATTCAACATGAACGAACACTGCACAAAATAAAGGAGCACGAAGGTAGACGTTTTCAAATTTCACGATTTCAAACTAAAAAAGATAATTCGGAGTACCCATGTCCGGAGTGCAGTAAAGTTTTCTACACTCTCGATATGTTCGCCGAACATCGAATTTTGCACGATTCCACAATAATCAAGTACACGTGTAAAGATTGCGGCAAAGAGTTTATTTCGGAGAAGAAACTTAAAGATCATTCAATTGTGCATCAAGAGCGAACTATGTACAAATGTAACGTTTGTGCGAAAGTTTTCCTTCGCAGTCAAACGCTTCAATATCATCGGTTGATTTGTAAAGCGGCCTATCCATGTGATGAATGTGTCGATAGTTTTATGACCGAAGAAGCGCTCGCCAAGCATAAAGTATTTCATTCGGCAATAAATTTTACTTGCAAGAAATGTAATAAAGTTTTTCCAAACCAAGAAACACTTTCAGTACACGAAAAGCGTCATTCACTTCGTATGAACTACACATGCCAATTATGCAAGGAAACGATATCTACACAAGCGAAATTTCAAAAGCACATCAAGGATCATTTGGAGGCCAATCTCGAGTGCCGGATTTGTAAAGAAAAATTTCAGAGTCTCGTCAAATACGGATACCACAAAGCTGAAATGCATTCAATAATGCGGCCATACGATTGTGTTCTGTGTAGCGATGAATTTTGCACTCGAAACGAGCTATTTCTTCACTTGCATAATCACATCGATATGAATACATCGACCAATATGTATCAATGTGAAAATTGCGATATAAAATTTTCCCTTAAAGACAACTACGAGAAGCATCGCGATTCGCATCGCAAAGATGAGACCATTGTATTAACACCGCAGACGTCCGAACAAGCTGTGGAAGAAGAACATAACTCGAATTTTAATTGTGATGAGTGCGATAAAACGTTCGAATACAGATCACTATTGGAACATCATAAAGATGCAGAACATGAAATTCGATCATATCCATGTACCGTTGGTTTTTGCGATCAAACATTTACAACGCCTGATATATGCAACGCACACAAACAGCAACACGAACAGCAAGAAAATTTTGCAGAAGCGTCACAAGATACGCTTCCATTCAAATGTAACATAGAAGGTTGTAAACGGTCCTTCGAATATGCTAGCCGTCTAAGCAAGCATATGACGTCACATGTGCTAAGTGAATATAAATGTACGAAATGCGATCGTATATTCTATTCGCAATCGATATTCCAGCATCATTACAACACATGTGAATGTACGGGCAGTAATCAATGTGGGCCAGTCAAATGTAATATTTGTCGTCAGCTATTTGAAAATCCAACAGTGCTACAGAATCATCGAAAGTATTGTTGGGAAAACAGCAGTACATTGAGCGAGGATAAAAGCATAATTTCGAATGATGATAGTATCCAGAGTATTCGATCAATTGATAATTTGCGAAGTCCTGAAAGTATTTTGTCGGTTTATGTACAAAACGAGTATGATTCAAATTTACTGCCAGaattataa
Protein Sequence: MNNFEVVKLHQNSSTQIPSCSDVQETNTNTTTKSKPNKNDVSKNQYECRIEGCGKTFTSASAVNNHMKRKHLAKSFYPCDECSANFTIQHERTLHKIKEHEGRRFQISRFQTKKDNSEYPCPECSKVFYTLDMFAEHRILHDSTIIKYTCKDCGKEFISEKKLKDHSIVHQERTMYKCNVCAKVFLRSQTLQYHRLICKAAYPCDECVDSFMTEEALAKHKVFHSAINFTCKKCNKVFPNQETLSVHEKRHSLRMNYTCQLCKETISTQAKFQKHIKDHLEANLECRICKEKFQSLVKYGYHKAEMHSIMRPYDCVLCSDEFCTRNELFLHLHNHIDMNTSTNMYQCENCDIKFSLKDNYEKHRDSHRKDETIVLTPQTSEQAVEEEHNSNFNCDECDKTFEYRSLLEHHKDAEHEIRSYPCTVGFCDQTFTTPDICNAHKQQHEQQENFAEASQDTLPFKCNIEGCKRSFEYASRLSKHMTSHVLSEYKCTKCDRIFYSQSIFQHHYNTCECTGSNQCGPVKCNICRQLFENPTVLQNHRKYCWENSSTLSEDKSIISNDDSIQSIRSIDNLRSPESILSVYVQNEYDSNLLPEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01455131;
90% Identity: -
80% Identity: -