Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282558.1:186527935-186530287[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.4e-06 0.0025 21.5 0.3 1 23 21 46 21 46 0.96

2 16 0.4 2.2e+02 5.9 0.9 1 23 52 75 52 75 0.93

3 16 0.00015 0.084 16.6 0.1 1 23 94 116 94 116 0.96

4 16 2.1e-05 0.012 19.3 0.5 1 23 123 145 123 145 0.96

5 16 0.013 7.2 10.6 0.3 1 21 151 171 151 172 0.94

6 16 0.47 2.6e+02 5.7 0.1 1 23 177 199 177 199 0.91

7 16 5.3e-06 0.0029 21.2 1.5 1 23 204 226 204 226 0.98

8 16 0.00022 0.12 16.2 1.2 1 23 232 254 232 254 0.98

9 16 3.7 2e+03 2.8 0.4 2 19 260 277 259 282 0.77

10 16 1.8 1e+03 3.8 3.6 1 23 288 310 288 310 0.95

11 16 6.9e-05 0.038 17.7 2.4 1 23 320 342 320 342 0.98

12 16 0.00033 0.19 15.6 1.6 3 23 368 389 366 389 0.91

13 16 0.45 2.5e+02 5.7 1.9 1 23 395 419 395 419 0.93

14 16 0.00037 0.21 15.4 1.3 1 23 435 459 435 459 0.98

15 16 0.047 26 8.8 2.7 1 21 464 484 464 485 0.90

16 16 0.19 1e+02 6.9 0.2 2 21 498 517 497 518 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.4e-06	0.0025	21.5	0.3	1	23	21	46	21	46	0.96
2	16	0.4	2.2e+02	5.9	0.9	1	23	52	75	52	75	0.93
3	16	0.00015	0.084	16.6	0.1	1	23	94	116	94	116	0.96
4	16	2.1e-05	0.012	19.3	0.5	1	23	123	145	123	145	0.96
5	16	0.013	7.2	10.6	0.3	1	21	151	171	151	172	0.94
6	16	0.47	2.6e+02	5.7	0.1	1	23	177	199	177	199	0.91
7	16	5.3e-06	0.0029	21.2	1.5	1	23	204	226	204	226	0.98
8	16	0.00022	0.12	16.2	1.2	1	23	232	254	232	254	0.98
9	16	3.7	2e+03	2.8	0.4	2	19	260	277	259	282	0.77
10	16	1.8	1e+03	3.8	3.6	1	23	288	310	288	310	0.95
11	16	6.9e-05	0.038	17.7	2.4	1	23	320	342	320	342	0.98
12	16	0.00033	0.19	15.6	1.6	3	23	368	389	366	389	0.91
13	16	0.45	2.5e+02	5.7	1.9	1	23	395	419	395	419	0.93
14	16	0.00037	0.21	15.4	1.3	1	23	435	459	435	459	0.98
15	16	0.047	26	8.8	2.7	1	21	464	484	464	485	0.90
16	16	0.19	1e+02	6.9	0.2	2	21	498	517	497	518	0.94

Sequence Information

Coding Sequence: ATGGATGTTATTACCAGAACAAAATctaaaaacgataaaaatgaCGCAGCTAAACATCAGTACGAGTGTCGCATTGAAGGATGTGGTAAATCTTTCACCAGCGCTTCGGCCGTCAACAATCATATGAAGCGAAAACATTTGGCCAAAAGTTTTTTTCCATGTGATGAGTGCTCTGCAAATTTTACCATTCAACATGAACGAACACTGCACAAAATTAAGGAGCACGAAGGTAGACGTTTTCATATATCacgatttcaaatgaaaaaagaTAATTCTGAATATCCATGCCCCGAGTGTAGTAAAGTTTTCTATACACTGGACATGTTTGCTGAACATCGGATTTTGCATGATTCCACGATTATTAAGTATACGTGTAAAGATTGTGGCAAGGAGTTTATATcggagaaaaaattaaaagatcatTCAATCGTCCACCAAGAGCGAACCATGTACAAATGCAATGTCTGCGCTAAAGTATTCCTTCGCAGCCAAACACTTCAATATCATCGTCTAATTTGTAAGGCGGCTTATCCATGTGATGAATGCGTCGATAGTTTTATGACGGAAGCAGCCCTCGTCAAGCACAAAGTATTTCATTCGGCCGCCAATTtcacatgtaaaaaatgtaataaagtgTTTCCAAATCAGGAAACACTTTCGGTGCATGAAAAACGGCACTCGCTTCGTATGAACTACACATGCCAAATATGCAAGGAAACAATATCGACACaagcaaaatttcaaaagcacATTAAGGACCATCTGGAGGTTAACCTTGAGTGCCGAATATGTAAGGAAAAATTTCAGAGTCTCGTCAAGTATGGATACCACAAGGCGGAGATGCATTCAATTATGCGGCCTTACGATTGTGTCCTATGTAGTGATGAGTTTTGCACACGAAACGAACTTTTTCTTCATTTACACAATCACATCGATATGAATACATCTACAAATATGTACCAATGTAAAAATTGTGATATGAAATTTTCGCTTaaagaaaattacgaaaaacaCCGTGAATCGCATCGCAGAGATGAAGTAGTTACTTTAGCAACGCCGACGATTGGGCAACCTGTGGAAGATGAAATCTCCAATTTTGGCTGCGACCAGTGTGATAAAACGTTCAACTATAAATCATTATTATCACATCATAAAATTGCTGAACATGAATCACGCTCCTCCTATTCATGTACAATAGGATTTTGTGATCAAAAATTTACAACGGCCGAACTTTGTAATGAGCACAAACAACTTCATGAAATTGATACGAATTTAGAACATGAATCACAGGACATGCTACCATTCAAGTGCAATATAGAAGGTTGCAAACGCTCCTTTGAATACGAAAGCCGTCTAAAGATGCATATGACGTCACATGTCATAAATGAATATAAGTGCACCAAGTGCGATCGAATATTCTTCTCGGAATCTATATTCCAGCATCACTACAAATTATGTGAATGCAGCAACAGCAATCAATTTGGTCCGGTCAAATGTAATGTTTGTAATCAGCTGTTCGAAAATCCCCTGGTTTTACAGAATCATCGAAAGTTTTGCTGGGAAAATAGCAGTACATTGAGTGAGGATAAAAGCTTACTCTCGAATGATGACAGTGTACAGAGCATTCGTTCGATCGATAATTTACGTAGTCCTGAAAGTTTGGTCGGTATCAATTTTGTATTCGAGGTTCTTTTGGTGCTTTGGTCGTTGATGTTACAACAAAAACTGTTAACTAGTGCAGCAAGAACAGGTGAAACTCAAAATGTAGCCGCAACAATAAATGTTGGTACATACAATCGAATAAACTACAAAAGCAACGGTGGACGCAATAATGTTAGTCGTCGACACAGCCGCAGCACCTGTCGATCATGGTTATGCAATATCGGTTATTCTCGGATACTGGCAGTAAACTAA
Protein Sequence: MDVITRTKSKNDKNDAAKHQYECRIEGCGKSFTSASAVNNHMKRKHLAKSFFPCDECSANFTIQHERTLHKIKEHEGRRFHISRFQMKKDNSEYPCPECSKVFYTLDMFAEHRILHDSTIIKYTCKDCGKEFISEKKLKDHSIVHQERTMYKCNVCAKVFLRSQTLQYHRLICKAAYPCDECVDSFMTEAALVKHKVFHSAANFTCKKCNKVFPNQETLSVHEKRHSLRMNYTCQICKETISTQAKFQKHIKDHLEVNLECRICKEKFQSLVKYGYHKAEMHSIMRPYDCVLCSDEFCTRNELFLHLHNHIDMNTSTNMYQCKNCDMKFSLKENYEKHRESHRRDEVVTLATPTIGQPVEDEISNFGCDQCDKTFNYKSLLSHHKIAEHESRSSYSCTIGFCDQKFTTAELCNEHKQLHEIDTNLEHESQDMLPFKCNIEGCKRSFEYESRLKMHMTSHVINEYKCTKCDRIFFSESIFQHHYKLCECSNSNQFGPVKCNVCNQLFENPLVLQNHRKFCWENSSTLSEDKSLLSNDDSVQSIRSIDNLRSPESLVGINFVFEVLLVLWSLMLQQKLLTSAARTGETQNVAATINVGTYNRINYKSNGGRNNVSRRHSRSTCRSWLCNIGYSRILAVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01455131;
90% Identity: iTF_01456704;
80% Identity: -