Tcon041079.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963556175.1
- Location
- OY744477.1:171047176-171052097[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.26 6.1e+03 -2.5 1.5 79 126 190 235 136 288 0.55 2 3 3.8e-105 8.9e-101 338.5 33.3 1 299 361 649 361 650 0.93 3 3 0.29 6.8e+03 -2.6 4.5 220 244 678 702 654 724 0.45
Sequence Information
- Coding Sequence
- atgtcgaTTAATAGCAGTAACGTTAATGATAATAAAGATGTACTAATCCTTAGTATTGAACACACAAATGATAATGATAGTATTACAAGTATTACAAATGGTagtattattgaaataaaaacaaacggtGAACGAATAACACCATCTGTCATACCGAAAGTGaactcaaataataatataagcaaaataaatttggattacaCCGAAAACAtcgataataaaacaataatttcgtTGAATGGTGATGGTGGTGAAATTTTATGGGattcaaatcataaaattacaaatactaGTTGTAACAGTGATAGTAGTATTTCGATAAGTAATAATACGAGTGCGGATGAAGAGTGTGCCAACGATATATTCGATGATGATGAAAATGGTGAAGAATTTAATTTGTCCGACAGTGAATTTGAAGAAATACTAGACGAGGACGATAACGAAGACGACGATAATAATGATTTTCATGATGCATCATCGGATCATGTCGACAGTGGTTGTGGTggtattgttataaaaaatactgaCGATAGTGGTTCGTACGATAGTTCGATCGTAAAAGATATCATCGATACGgtagatattttacaagatagcgataaaaatgtgataaaaattataaataattatcataatgaGTTGGATAAGAATGACACATTGaacaatacaaataatgatttcgaagtaaataatttagtaaatacgATCGAAATTAATCAAccaaaatacgaaaattttattttaaatcataatagtgataatagtggtataatttttaatagtagtagtagtagtagtgatagtaataacaataataatacgaGTGATACAAATATGTTGAacgaaactataaataaacgGCTTTTAAGCAATCATTTATTGGCATCCACGCCAATAAATCGATCACCATCGCTTTCCGACGAGCCAAGCTTAGAACAACTAGTGAATTTACATCAGCGAAGAAAATCATCATTGCACACTGGCAATCATCATCAGTATTTGTTGCACGATAATACTGGCGGAAATAATCACGAAGATGATGaagttattgttaatattttgggCAAGGATAACGAAATAGCAGAAGCAAGACTGGCAGCACGTCGACAGGCTCGTGCAGAAGCGCGAGAAATTCGTATGCGCGAACTGGAGCGACAACAAAAAGAACAAGAACAAAATGCAGATCGTGTATTCGATATGCAAACGGCAGCCGGTATTGATCCACGATCACGTATAGCAGCGTTATCTACACCGACAACAATATCAACGGTGCGCGGTAATTCAATGTCGTCGCGACGTAGCAGTGAAGATTCGCTCGAAGAAGAAGGTCGTAGTTTGCGAGATTTACGGCACGAAATTAAAGATGTTGAAGAAAGATTTCGTAAGGCTATGATTGCCAATGCTCAACTAGACAATGAAAGATCTTCTCAATCATACCAAATTCAACTATTAAAAGATAAACTAGAGGAAATGGAAGAATCACACTCGCAATTACAGCGTGAATATCGGGAAAAATGTCGTGATCATGATGCCTTGAAACGGAATAATGATAAATTGCAAGAGGAGTTAAAATTAGTGCAGGGCCAATTAAATGAACGAGATACACTAATTGTTGAACAAGGTTTAGTAATAGTTACGATTGAGGATGAAAATGGTACAGATGCACGTCGTGCACTAGTCAGTGCAGAAAATGCACATTTATTGGAAACAACTCAGGGTTCTTTAGatgtaagacttaaaaaattcgCTGCCGAACGAAAACAATTCGAAATTGATATTCAGCAACTTCAACAACAATTATCGGAGGCAAAAACACAGGGACGTCGATCGAATTCAATGAATGGCCCAACCACTGATGATGATCATGACGATGTTCCAAGAGATTCAACCAGTAAATTATTAGCcgaatgtaaatataaattacaaaaagccGATCAGGAAATATTAAGCCTTCAAGCAAGTTTAGCACGTTCAGAAACGCAAGTAATACGATACAAGAGTACTGCGGAGGCGGCTGAAAAAGCCGAAgcagaattaaaaattgaacgaCGTAAACTGCAACGAGAGaatcGTGAGGCAATGGAACGTCTAGAAGAGTTAGAAACATCAAACAATCATTTACTCAAGCGTTTAGATAAGCTCAAAAACGCCAAAAGTACATTACTTAAAGAGCTCTGa
- Protein Sequence
- MSINSSNVNDNKDVLILSIEHTNDNDSITSITNGSIIEIKTNGERITPSVIPKVNSNNNISKINLDYTENIDNKTIISLNGDGGEILWDSNHKITNTSCNSDSSISISNNTSADEECANDIFDDDENGEEFNLSDSEFEEILDEDDNEDDDNNDFHDASSDHVDSGCGGIVIKNTDDSGSYDSSIVKDIIDTVDILQDSDKNVIKIINNYHNELDKNDTLNNTNNDFEVNNLVNTIEINQPKYENFILNHNSDNSGIIFNSSSSSSDSNNNNNTSDTNMLNETINKRLLSNHLLASTPINRSPSLSDEPSLEQLVNLHQRRKSSLHTGNHHQYLLHDNTGGNNHEDDEVIVNILGKDNEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPRSRIAALSTPTTISTVRGNSMSSRRSSEDSLEEEGRSLRDLRHEIKDVEERFRKAMIANAQLDNERSSQSYQIQLLKDKLEEMEESHSQLQREYREKCRDHDALKRNNDKLQEELKLVQGQLNERDTLIVEQGLVIVTIEDENGTDARRALVSAENAHLLETTQGSLDVRLKKFAAERKQFEIDIQQLQQQLSEAKTQGRRSNSMNGPTTDDDHDDVPRDSTSKLLAECKYKLQKADQEILSLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01054334; iTF_01458388; iTF_01457343; iTF_01051936;
- 90% Identity
- -
- 80% Identity
- -