Tunc031568.1
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951394425.1
- Location
- OX596382.1:16233206-16239098[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.49 1.2e+04 -3.3 0.4 233 284 234 284 232 288 0.55 2 2 6.9e-105 1.7e-100 337.6 32.6 1 299 370 660 370 661 0.92
Sequence Information
- Coding Sequence
- atgtcgtTAAATAGTATTAACGATAATAATAAGGATGTGCTAATCCTTAATATTGAGCATACAAGTGATAATGATAGCATTAAAAGTATTACAAATGGcagtataattgaaataaaaacaaatggtgATGTATTGGCAGTACCATCTATTGCGCAAAATGGGAACCCCAGCAATaatataagcaaaataaatttggattacACAGAAAACATTGATAACAAAACCATAATTTCGTTGAATGGTGATGGTGGTGAAATTTTATGGgattcaaatcataaaattacgAATAATAGTAGCAGTAGTGGTAGTAATTCGATAAGTATTAATACGAGCGCGGATGAAGAGTGTGCAAACGATATATTCGTCGATGATGAAAATGGTGAGGAATTTAATTTGTCCGATAGTGAATTTGAAGAAATACtagacgacgacgacgacgaggACGAAGACGAGGATCAAAATGATTTTCATGATGCATCATCGGATCATGTCGATAGTGGTTGTGGTGGCATTGTAAAAAATACCGACGATAATGGTTCGTACGATAGTTCAATCGTAAAAGATATTATCGATGCAGTTGATATCGTACACGATAACGataaaaatgtgataaaaattataaataattatcataatGAGTTGGATGCGCATGACAATTTGATCAATGCTGATAATTGTTACGATGATGATGTTGaagtaaataatttagtgaataaaattgaaatcaataaacCACAAGACGACGAGTATAGTagcattataaaaaataacagtTGTGAGAATAGTAGTGACATAGTTTTTAATGAtagtgataaaaataatataattggtAGTGATAGTAACAACAATACTagtaatataaatatgttaaacGAAACGATAAATACACAGCTTATAAATCATCATAATACATCGACACCAATAAATCGGTCACCATCGCTTACCGATGAGCCTAGTGTGGAACTATTGTCGAATTTGCACCAACGACGAAAATCATCATCGCACACCAATAATCACCATCAGTATTTGCTGCACGATAATAGTGGCGGGAATAATCATGAAGATGATGAAGTTATTGTTAATATCTTGGGCAAGGATAACGAAATAGCAGAGGCAAGACTGGCAGCACGTCGACAGGCTCGTGCCGAAGCGCGAGAAATTCGTATGCGCGAACTGGAGCGACAACAAAAGGAACAGGAACAAAATGCAGATCGTGTATTCGATATGCAAACGGCAGCCGGTATTGATCCATTGTCACGATCACGTATAGCAGCACTCTCGACACCGACCACCGTTGCAGCGGTGCGCGGTAATTCAATGTCTTCGCGACGTAGCAGTGAAGATTCGCTTGAGGAGGAGGGACGCAGTTTACGCGATTTGCGGCACGAGATCAAAGAAGTTGAGGAACGATTTCGTAAGGCTATGATCGCTAACGCTCAATTAGATAATGAACGATCATCACAATCATATCAAATTCAATTGCTGAAGGATAAGCTGGAGGAAATGGAAGAATCGCATGCGCAATTACAACGTGAATATCGGGAAAAGTGTCGTGATCATGATGCCTTAAAACGGAACAATGATAAGCTGCAGGAGGAGCTGAAATTAGTGCAGGGCCAATTGAACGAACGTGATACGCTAATTGCTGAACAAGGTCTAGTTATAGTTACGATTGAGGATGAAAATGGTACAGATGCACGTCGTGCTCTAGTCAGTGCGGAAAATGCACATTTATTGGAAACAACTCAGGGCTCTTTAGATGTAAGACTTaaaaaattcgccgccgatcgAAAACAATTCGAAATTGATATTCAGCAGCTGCAACAACAATTATCCGAGGCAAGAACGCAGGGGCGACGTACTACTTCGATGAATGGCCCAACCGGTGATGATGATCATGAAGATGTTCCACGAGATTCAACAAGTAAATTATTAGCcgaatgtaaatataaattacaaaaagccGATCAAGAAATTTTAAGCCTTCAAGCAAGTTTAGCACGTTCCGAAACCCAAGTAATACGATATAAGAGTACTGCGGAGGCGGCCGAAAAAGCGGAggctgaattaaaaattgaacggCGTAAGCTGCAACGGGAGCCAATGTTGGTAGATCTGTGGGATGAGTGTCATTGTCAGTag
- Protein Sequence
- MSLNSINDNNKDVLILNIEHTSDNDSIKSITNGSIIEIKTNGDVLAVPSIAQNGNPSNNISKINLDYTENIDNKTIISLNGDGGEILWDSNHKITNNSSSSGSNSISINTSADEECANDIFVDDENGEEFNLSDSEFEEILDDDDDEDEDEDQNDFHDASSDHVDSGCGGIVKNTDDNGSYDSSIVKDIIDAVDIVHDNDKNVIKIINNYHNELDAHDNLINADNCYDDDVEVNNLVNKIEINKPQDDEYSSIIKNNSCENSSDIVFNDSDKNNIIGSDSNNNTSNINMLNETINTQLINHHNTSTPINRSPSLTDEPSVELLSNLHQRRKSSSHTNNHHQYLLHDNSGGNNHEDDEVIVNILGKDNEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRIAALSTPTTVAAVRGNSMSSRRSSEDSLEEEGRSLRDLRHEIKEVEERFRKAMIANAQLDNERSSQSYQIQLLKDKLEEMEESHAQLQREYREKCRDHDALKRNNDKLQEELKLVQGQLNERDTLIAEQGLVIVTIEDENGTDARRALVSAENAHLLETTQGSLDVRLKKFAADRKQFEIDIQQLQQQLSEARTQGRRTTSMNGPTGDDDHEDVPRDSTSKLLAECKYKLQKADQEILSLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQREPMLVDLWDECHCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01454842;
- 90% Identity
- -
- 80% Identity
- -