Tlat032090.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963932295.1
- Location
- OZ010738.1:176959989-176973155[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.25 9.7e+03 -3.4 0.7 243 270 221 247 204 266 0.45 2 3 4e-106 1.6e-101 340.7 33.0 1 299 333 623 333 624 0.92 3 3 0.14 5.5e+03 -2.6 4.5 220 244 652 676 628 698 0.45
Sequence Information
- Coding Sequence
- ATGTCGCAGGTCAATAGCAACAATAGTGGCAATAAGGATGTGCTGATCCTTAATATTGAACATAGAAGTGATAACGAGAATATAAAGTGTACTCGAAGTGGGagtataattgaaataaaaacaaatggtgATTTAGCAACACCATCTATTGTACAAAATGggaatataagcaaaataaatttggaCTACACCGACAATAttgataataaaacaattatctcGTTAAATGGTGATGGTGGTGAAATTTTATGGGATTCAAATCATAAAATAGCTAGTATAAGTAGTGGCAGTAATTCAATCAGTATTAATACAAGTGTCGATGAAGAAGAGTGTGGAAACGATATATTCGGTGACGATGAAAATGGtgaagaatttaatttatccgATAGTGAATTGGAAGAAATACTAGACGACGACGACGAGGACGAGGATCAAAATGATTTTCACGATGCATCGTCGGATCACATCGACAGTGGTTGTGGTGGAATTGTAAAAAATATCGACGACAACGGTTCGTACAATAGTTCAATCGTAAAAGATATTATCGACACGGTCGATATAATACAAGATAGTGACGataaaaatgtgataaaaattgtaaataattatcgTAACGAGTTGgatgtggaaaataatagtgtaaATAGAATTGAACAGAATAATAAACAGGAGGACGACGAGAGTAGtgttataaataatagtgaTAGTTTTAGTGGTAGTGATAACAatagtgataataataataataatacaaacatgTTAAACGAAACTATAAATACACGGCTTGTTGGCCATCATGTATCGACGTCGACGCCAATTAATCGATCGCCCTCGCTTACCGACGAGCCCAGTGTCGAGCTACTCGCTAATTTGCATCAGCGACGAAAATCTTCATTGCACATCCATCATCAGTATTTGCTGCACGATAACACGGGTGGGAATAATCACGAGGATGATGAagttattgttaatattttgggCAAGGATAACGAAATAgCAGAGGCAAGACTGGCAGCACGTCGACAGGCTCGTGCAGAAGCTCGAGAAATTCGAATGCGTGAACTGGAGCGACAACAAAAGGAACAGGAACAAAATGCAGATCGTGTATTTGATATGCAAACGGCAGCCGGTATTGATCCATTGTCACGATCCCGTATAGCAGCACTATCGACGCCAACAACAATATCAACGGTACGCGGCAATTCAATGTCGTCGCGACGCAGCAGCGAAGATTCACTCGAGGAGGAGGGTCGCAGCTTACGCGATCTAcgacatgaaatcaaagaagtcGAGGAACGTTTTCGCAAGGCTATGATCGCCAATGCTCAATTAGATAATGAACGATCATCACAATCATATCAAATTCAATTGCTGAAAGATAAGCTGGAAGAAATGGAGGAGTCGCATGCCCAATTGCAACGCGAGTATCGGGAAAAATGTCGTGATCATGATGCCTTAAAACGGAACAATGATAAGCTGCAAGAGGAGTTGAAATTAGTGCAGGGCCAATTGAACGAGCGCGATACACTTATTGCTGAACAAGGTCTAGTTATAGTTACGATCGAGGATGAAAATGGTACAGATGCACGTCGTGCTCTAGTCAGTGCGGAAAATGCGCATTTATTGGAAACAACTCAGGGTTCGCTAGATGTAAGACTTAAAAAATTCGCCGCGGATCGAAAACAATTCGAAAATGATATTCAGCAGCTTCAACAACAATTATCCGAGGCTCGAACACAGGGACGACGATCTAATTCGATGAATGGTCCAACCGGTGATGACGATCATGACGATGTTCCACGAGATTCGACAAGCAAACTATTAGCcgaatgtaaatataaattacaaaaagccGATCAAGAAATATTGAGCCTTCAAGCAAGTTTAGCCCGTTCTGAAACGCAAGTAATACGATATAAGAGCACCGCCGAGGCGGCCGAAAAAGCCGAGgctgaattaaaaattgaacggCGCAAGCTGCAACGGGAGaatCGCGAAGCAATGGAACGTCTAGAAGAATTAGAAACATCAAATAATCATTTACTCAAGCGTTTGGATAAGCTTAAAAACGCTAAAAGTACATTACTTAAAGAGCTTTGA
- Protein Sequence
- MSQVNSNNSGNKDVLILNIEHRSDNENIKCTRSGSIIEIKTNGDLATPSIVQNGNISKINLDYTDNIDNKTIISLNGDGGEILWDSNHKIASISSGSNSISINTSVDEEECGNDIFGDDENGEEFNLSDSELEEILDDDDEDEDQNDFHDASSDHIDSGCGGIVKNIDDNGSYNSSIVKDIIDTVDIIQDSDDKNVIKIVNNYRNELDVENNSVNRIEQNNKQEDDESSVINNSDSFSGSDNNSDNNNNNTNMLNETINTRLVGHHVSTSTPINRSPSLTDEPSVELLANLHQRRKSSLHIHHQYLLHDNTGGNNHEDDEVIVNILGKDNEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRIAALSTPTTISTVRGNSMSSRRSSEDSLEEEGRSLRDLRHEIKEVEERFRKAMIANAQLDNERSSQSYQIQLLKDKLEEMEESHAQLQREYREKCRDHDALKRNNDKLQEELKLVQGQLNERDTLIAEQGLVIVTIEDENGTDARRALVSAENAHLLETTQGSLDVRLKKFAADRKQFENDIQQLQQQLSEARTQGRRSNSMNGPTGDDDHDDVPRDSTSKLLAECKYKLQKADQEILSLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01454842;
- 90% Identity
- -
- 80% Identity
- -