Napp062800.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947310385.1
- Location
- OX371225.1:85950247-85963149[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.082 6.7e+03 -1.8 0.3 140 189 204 256 172 277 0.55 2 3 9.1e-106 7.4e-101 339.5 33.5 1 299 350 640 350 641 0.92 3 3 0.14 1.2e+04 -2.6 4.5 220 244 669 693 645 715 0.45
Sequence Information
- Coding Sequence
- ATGTCGTCAAATAGTAGTAACGGTAGCAATAAGGATGTGCTAATCCTTAATATTGCACATACAAGTGATAATGATACCATCAAAAGTATTCCAAATGGAAGCATAATCGAAATAAAAACAAATGGTGATTTAGTAACACCACCTATCGTACAAAATGGAAACTCAAATAATAATATAAGCAAAATAAATTTGGATTACACAGAAAACATTGATAATAAAACGATTATTTCATTGAATGGTGATGGTGGTGAAATTTTGTGGGATTCAAATCATAAAATTTCAAATACTAGTATTAGTAGTGCTAGTAACTCAATAAGTATTAATACGAGTGCAGATGAGGATTGTGCAAACGATATATTCGGTGAGGAGGACAATGGTGAAGAGTTTAATTTGTCCGATAGTGAATTTGAAGAGATACTAGACGACGACGAAGACGAAGATCAAAATGATTTTCATGATGCCTCCTCGGATCATGTCGATAGTGGCTGTAGTGGTATTGTAAAAAATACAGATGATAATGGTTCGTATGACAGTTCGATAGTAAAAGATATTATCGATACAGTCGATAAAATACAAGATAATGATAAAAATGTGATAAAAATTATAAATAATTATCATAATGAGTTGGATGTGCATGACAGTTTGATTAATAATTGTAACGATGATGAAGTAAATAATTTAGTAAATAAAATTGAAATCAATAAAGCACAAGGCGAAAATAGTATTATAAATAATAGTGGCCTAATTTTTAGTGATAGTGATAAGAATATAATCGATAGTGATAGTAATAATAATAATACAAATATGTTAAACGAAAGTATAAATACTCGACTTGTTAATCACCACTTATCAACGTCGACGCCAATAAATCGTTCACCATCGCTTCCAGAAGAGCCGAGTATGGAGATATTGGGGAATTTACACCAGCGACGAAAATCTTCATTGCACGCAAGCCATCATCAGTATTTGCTTCACGATAACAACGGCGGTAATAATCATGAAGATGATGAAGTTATTATTAATATCTTGGGAAAGGATAACGAAATAGCAGAGGCAAGACTGGCAGCACGTCGGCAAGCTCGGGCAGAAGCACGAGAGATTCGTATGCGCGAACTGGAGCGGCAACAAAAGGAACAGGAACAAAATGCAGATCGTGTTTTTGATATGCAAACGGCAGCCGGTATCGATCCTTTGTCACGATCCCGTATAGCAGCACTGTCTACACCGACCACAATATCAACGGTGCGCGGTAATTCAATGTCATCGCGACGTAGCAGTGAAGACTCCCTTGAGGAGGAGGGTCGCAGTCTACGCGATCTACGACATGAGATCAAGGAGGTTGAGGAACGATTTCGTAAGGCAATGATCGCCAACGCTCAATTAGATAATGAACGATCTTCACAATCATATCAAATACAATTGCTGAAAGACAAGCTGGAAGAAATGGAAGAGTCGCATGCGCAATTGCAACGTGAGTATCGAGAAAAATGTCGTGATCATGATGCCTTAAAACGGAATAATGATAAGCTACAAGAGGAGCTGAAATTAGTACAGGGCCAATTGAACGAACGTGATACATTAATTGCTGAACAAGGTCTAGTTATAGTTACGATTGAGGATGAAAATGGTACAGATGCACGTCGTGCTCTAGTCAGTGCAGAAAATGCACACTTATTGGAAACATCTCAGGGTTCTTTAGATGTAAGACTTAAAAAATTCGCTGCTGATCGAAAACAATTCGAAAATGATATACAACAGCTTCAACAACAATTATCTGAGGCGCGAACACAGGGGCGACGATCTAATTCGATGAATGGCCCAACAGGTGATGATGATCATGAAGATGTTCCACGAGATTCAACAAGTAAATTATTAGCCGAATGTAAATATAAATTACAAAAAGCCGACCAAGAAATATTAAGCCTTCAAGCAAGTTTAGCACGTTCCGAAACTCAAGTAATACGATATAAGAGTACAGCGGAGGCGGCTGAAAAGGCGGAAGCTGAATTAAAAATAGAACGGCGTAAACTGCAACGAGAGAATCGCGAAGCAATGGAACGTCTGGAAGAGTTAGAAACATCAAATAATCATTTACTCAAGCGTTTGGATAAGCTTAAAAACGCAAAAAGTACATTACTTAAAGAGCTCTGA
- Protein Sequence
- MSSNSSNGSNKDVLILNIAHTSDNDTIKSIPNGSIIEIKTNGDLVTPPIVQNGNSNNNISKINLDYTENIDNKTIISLNGDGGEILWDSNHKISNTSISSASNSISINTSADEDCANDIFGEEDNGEEFNLSDSEFEEILDDDEDEDQNDFHDASSDHVDSGCSGIVKNTDDNGSYDSSIVKDIIDTVDKIQDNDKNVIKIINNYHNELDVHDSLINNCNDDEVNNLVNKIEINKAQGENSIINNSGLIFSDSDKNIIDSDSNNNNTNMLNESINTRLVNHHLSTSTPINRSPSLPEEPSMEILGNLHQRRKSSLHASHHQYLLHDNNGGNNHEDDEVIINILGKDNEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRIAALSTPTTISTVRGNSMSSRRSSEDSLEEEGRSLRDLRHEIKEVEERFRKAMIANAQLDNERSSQSYQIQLLKDKLEEMEESHAQLQREYREKCRDHDALKRNNDKLQEELKLVQGQLNERDTLIAEQGLVIVTIEDENGTDARRALVSAENAHLLETSQGSLDVRLKKFAADRKQFENDIQQLQQQLSEARTQGRRSNSMNGPTGDDDHEDVPRDSTSKLLAECKYKLQKADQEILSLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01454842;
- 90% Identity
- iTF_01054334;
- 80% Identity
- -