Chis025588.1
Basic Information
- Insect
- Cataglyphis hispanica
- Gene Symbol
- -
- Assembly
- GCA_004195275.1
- Location
- SGAY01017243.1:1065-1541[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-12 1.1e-08 35.4 0.0 2 35 26 60 25 66 0.91
Sequence Information
- Coding Sequence
- ATGGGAAAAGAAATCGCTGACTATTTTCTAGCTGACTATACGACCCTGCTGAAGCTGAAGGCGCCCACGTGGACGCGACACGATCTCCAGGAGGCGATCGAGGCGGTGGTGACCCAGAAGATGCGCTTCACCCAGGCGTCGACCAAATACGGCATCCCCAAGGGCACCCTTTACGACAACATCCTCGGCAAGTCCAAGAGGATGATGATACTCGAGGAGGCCGGTCTCGATCCGACCGAGGAAACGGCCGTGCTCGAATTCTGCTGCGACATAAGCGTCAGTCCGTACAACCGGCGAACGAAAAAGTCCCTCAACGCGATATTGAATTTCGTCGAGCAACTCAGGCAGAAGCGCGATCCCGCCTTCGTGTTCACCGGGTTGTCGGGCTTCCGTTGGTGGTGGGCCTTTTGTAAGAAGCACTCTATAGTCTCGCTCTATTTCAATGACGAGAATGAGAACGGGGCCGACTCCTCTTAA
- Protein Sequence
- MGKEIADYFLADYTTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMILEEAGLDPTEETAVLEFCCDISVSPYNRRTKKSLNAILNFVEQLRQKRDPAFVFTGLSGFRWWWAFCKKHSIVSLYFNDENENGADSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00868036;
- 90% Identity
- iTF_01453998;
- 80% Identity
- iTF_00280543;