Tmon029371.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010001375.1:155345-166223[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.013 2.7 10.7 1.6 2 21 194 213 193 215 0.93 2 28 0.002 0.42 13.2 3.0 1 23 233 256 233 256 0.97 3 28 0.00018 0.037 16.6 2.4 2 23 263 285 262 285 0.96 4 28 0.049 10 8.9 0.3 1 23 428 450 428 450 0.95 5 28 0.023 4.7 9.9 4.3 1 23 468 491 468 491 0.90 6 28 0.15 31 7.4 1.0 1 23 546 569 546 569 0.95 7 28 0.06 12 8.6 0.6 1 23 575 597 575 597 0.97 8 28 0.85 1.8e+02 5.0 1.8 1 23 606 628 606 628 0.94 9 28 0.00018 0.037 16.5 0.2 1 23 688 711 688 711 0.97 10 28 0.29 60 6.5 2.1 2 20 760 780 759 784 0.83 11 28 0.95 2e+02 4.8 0.1 2 23 793 815 793 815 0.93 12 28 0.062 13 8.6 0.3 2 23 822 844 821 844 0.94 13 28 7.3e-05 0.015 17.8 1.4 1 23 851 873 851 873 0.98 14 28 0.018 3.7 10.3 1.8 1 23 958 981 958 981 0.94 15 28 0.02 4.1 10.1 0.5 2 23 988 1010 987 1010 0.89 16 28 0.98 2e+02 4.8 0.9 2 21 1037 1056 1036 1057 0.92 17 28 7.4 1.5e+03 2.0 0.1 11 23 1082 1094 1072 1095 0.85 18 28 0.00024 0.05 16.2 0.5 1 23 1101 1125 1101 1125 0.97 19 28 0.52 1.1e+02 5.7 1.3 2 23 1133 1155 1133 1155 0.93 20 28 0.16 33 7.3 4.4 1 23 1193 1216 1193 1216 0.97 21 28 0.0095 2 11.1 0.3 3 23 1222 1243 1221 1243 0.95 22 28 0.0056 1.2 11.9 0.3 1 23 1285 1308 1285 1308 0.97 23 28 0.00019 0.039 16.5 2.6 1 23 1318 1342 1318 1342 0.91 24 28 2.2 4.5e+02 3.7 2.2 2 23 1404 1426 1403 1426 0.93 25 28 1.5 3e+02 4.2 0.3 2 23 1433 1454 1432 1455 0.93 26 28 0.0014 0.28 13.8 0.1 1 23 1540 1562 1540 1562 0.95 27 28 0.00016 0.033 16.7 0.0 1 23 1581 1604 1581 1604 0.95 28 28 0.022 4.6 10.0 0.7 1 21 1608 1629 1608 1630 0.93
Sequence Information
- Coding Sequence
- ATGTCTTTCGATACGGAAAGCTACATGCAGCTTTGTCGTCTGTGTGCTTCTTATCAAGCCATCAAAATGGAAATCTACGGTAAAGAGGGAACGGGACGAAATTTGGTGGAGAAGATTGAGATCTGTCTTCCGTTCAAGGTTTGCGAAGACGACCATCTCCCCAAGTCACTCTGCTATCGCTGCATGTACCTTCTGGAGAACTTCTATGACTTCCGTAAAAACTGCGTCAACTCTGTGTCTCTGCTGGAGAGCTGTCTCACTGACCCAGAAGGGCTGGAGGTGAATCCAGAACTGAGACTGGAGTATGAACGTCTCCAAAGTCAACTGCGGGAAGTGAAAGGTCGCAACAAGAAAGGGGAAGTTGGAGAGACGGACAACTCCATGCCTCGATTGGAGCCGCAGGTCCCTGTGCCGAACGTGGTGGGCCGTAACGGGCGCCGACCTTCTGGGGAACCCGCCAAGCAACAAACCCATTCCTCTGCGCCCGTCATGGACGACTCTGGGGACTATCACGAGGAAGGTGGGAGTTGGGACGTGCGCACGCTCAAAAGAAGCTCTAAGAAGCCAACATCGCTACTGTCGTGTCCCTACTGCACCAAGGCCTTCTACTCCCAAGGCCGACTCTTGCTCCACATAAAGTGCCACAATGGAGAAGAGGTGCCCGGCGCTGGGGTCAACACCGCGGGCAAACGGCCCTTCTCGTGCGACCTGTGTCATCGCTCCTACACACTCTCAAAGCACCTGTGGGGACACATGAACTCTGCTCACAAAGGAGACCCCGCTGTTACGTGTCCTGTGTGTGGTCGGGTCTGTTCCACTTGCGCCAACTTGGAGGAACACAAGCGCTCCAAACACGGTCAGTCCCACCTCATGCTGTCTGTGTTGTACACAACACTAGTGCTTGTGTTGAGGTCTACATGTGTGCTGTGTTTGTGCGCAGGTCTAGAGGACGGTGAGGTGGTGGAGTCCACCTACACCGACAATGCCGAAGCCAAGGAGCCTCTGGAGCCCGCGTTCAAGTCCGAGTCGGAGTTGCGGGTCAAGCGGCAGGAGAGAGCTGGGAGCGGGAAGTCTCAGGGGGGGGAAGTGAGCCTTCTCAAGCAGACACTGCTCAAGTCTCGTAAGCGAGCAGCAAACCAGGACGAAGAAGAGATGGATGTCGAGATGTCAAAGAAGCATGCCCCTGAGGCGGTGGCTCCAGATAGCAACCCTGGGAACCGCCGCAAGAGCTCCAAGCCGAGGAAGATTGCCCGATGCGAGAGCGGAGAAGAGGAGGAGGAGTTCACTTGCGAGGTCTGCTTCGACACTTTCCCCAGCAGCGAACATCTCATGGAACACGGAGCCGTCCATTGTGGCTACGAGGAAGAAGCGTCGGAGACCTCCGGTGACAGAGACAAGCCGTTCACTTGTCTTCTCTGTGACAAGAGCTTCTCTGTACGTCAAGCTCTGAGCCGGCATTTCCATGCATGCCACGGCATCGACCCGTCAGATGTGGACGTGTTTGGGTCTACGTCCGACCCACTCCACAAGCAGATGTTTGTTCCCTCTGCGGAAGACATGATGGAGATGGAGACTGGGATAGTGGGAGGGGGGGCAGAGGTGAACTCTGGCCAGGACGCCTCAGGAAAACAGTTCTTCTCCTGTGAGGTATGCATCAGAGAGTTTCATGACAGAGGCAGCTTGTGGCTGCACATGCTACACGCCCATCGTGACCAGGCTGGGTATGCCTGTGGGGTGTGTCTCAAGATCTGCGGCAACAATGACCACTTAGGTGCGCACTGGCGGCAGCATGTCGGAGGGGCTGACAATAGACGATACGTGTGCACAGTGTGCGGCCGACAGCACGACACCCGCAAGAAGCTGGTTCACCATGTGGGCATTCACGCCCTGGAGAACGGGGAAGGGGGCTTTTTCGACCCCGAGAGTTTTGTTGTTCAGAACCAAGCGTTCTACAGTTCAGAGCACAAAGAAAAGGATGGAGGAATTGCGTCTGACTACGGTGCATCAAGCAGCTCGGACCATTGGGCCTTGGAGAGCCCGACTCAAACACAAGCTGATAACTACTCCTGTGAGATATGCTACAAATCTTTCCCCTCCGAGGAGGGTTTGGTGAAGCACAAGAGGAATGCCCACAAGGAGGAGCTCGCAGGAGGAGGAATGCTGCCTCGCGGCTCATATCAACTGTTCTTTGTGTGCGAGCTGTGCGGCTCTTCACATGGCTCCAAGTCGGAACGCTGGCGGCACGTGTATCAAACCCATTGTGGTCAGGCGACCCTCACCTGCGACCGTCCTACCTGCGGGAAGGTGTTTACAACGCAGGCGCTTCGAACAGAACATTGTGCCTCACATCATCAGAAGCAGGGGGCTGTTCCCAACACTTGTGAAGTGTGCGGGAAGCTGTGGGGGTCCCGCGTTGACTTTTGGAAGCACATGATGGGGGTCCACCCGGACTTGGTGGCGCTCACCTGCGGGGTCTGCCTCAAGGTGCTGTGTGACTTGGCAGAGCTGAAGACACATGTCCGCGCTACACATTGGCCGCTCACGAACGAGTTCTCGTGTGATTTATGTGGTCGGCCCTACTCCAACAAGTCCAAGATGTCACGCCACCGGAAGATACACGGGGACGACTCCCAAGACCCTCGTATTTTGGAAAACACAAACTCCTCAAAGAAACTATTGTCCTTGTCAGGCGCAAAGAATCCGGATCTGATGAAGAAGAGCATTTTGAAAATTCCTGATCCATCCACGGTCGGATTGTCCTTGGACCCCAAGAGGCTCCTGCACCCCACTCTGTGGTGTGAGACTTGCCCTCATCTGCACTTTACAACTGTGGCGCAGCTGGGCCACCACCGGCGTACCGTACACAACCTGTATCCCTGCGACCTCTGCACCAAGTTCTACAGTCGCACCACACATCTGCTGTACCATGTAGTGAAGGCACACAGCAACCATCCTGAGCTGAGGTGCTCGATCTGCAGCAAGATGTGCCGCAGCAAGTCTGCTGTGGCTGCCCATGTCGCTGCCAAACACTTCCCTCGGGAGgcgaagaagaagaagaatcaTCAGCCCAGCTTCAAGTCTGCGGCAATCAAGAAACCCTCGACACAAACATGTTCACTTTGTTCCAAGACGTTCTGGAAGCGCTCAGTGTATAGGAGGCACTACAAAGCGTGCCGTGCCAAGAACGTGTCCAAACCTGCACCCGAGGCCTTGGCGTGCGAAGTCTGCCCTGATATTGCGCCGACCACCAAGACAGAACTCATGACGCACATTCGTGACCATCACGCGGGACATCCCAGCTTCTGTTGTCCGGTGGAGGGTTGTGGTCGGATGGTCCGCAGTCGGAGTGATCTGGAGCTGCACCAAAAGATGCACGATGCGGGGAAGCCCCACGCGACTTGCGACTTGTGCGGGAACGTGTACAACCATGAGTCTCGCGCTAGGAAGCACATGTTCCTCTATCACAAGCGTGCAGAGCTGGCGGGACTCTGTGGGGTGTGCCTCAAAAACTTGCCCGACATGGAGCGCCTTAAGGAACATGTGGTTGCTGAACACCCGGGTAACTTGGAAGCGCCATTCACATGCCAGGTGTGTGCCAAGACGCTCTCTAACAATTCCAAGGTGTGCCAGCATGTATTGACGTGCCACCCATCAGTTGTGGCGTGTCGAACGTGTCTGCAGGTGTTCCCCGACCGCTCAGATCTGCAGACGCACAGGAAGGAGGTCCATGACTGCTACGATATGGTAAGAGAAGACCAAACTACCGACATTGTTAAAGATGAAATGGAAAAGAAACAAGAGGTGGCCCCACTTAAAGAAGGTGAGTCCCCACCCAAGCGTTCCAGACGCTCCTACGAGTGCGACTCTTGCGGAGAACAACTAACATCCCCGTCATTGCTGAGTGACCACAAGAAACGGACACATAGTTTGCAGGTAAATGAAACTAAACCCTATCACTGTGGTGTCTGTGACAAGCACTTCTCTAACAAGACCAGTTACTGGAAGCACATCAACTCTCCAATACACCTCAACACCAAAATGATCAAATCAGCATCTTCAAACAGCGCCAGGGGCATCTCGCCTATAGACAACAAGATACCATTGGTGGTGTTACCTAATCTGGGTGAGCTGGATCTAAAGCTAGAGGTGAGTCCTGCCAAGACCACTCGCCCCGAGTCTAAGAAGGGGTACGATAGTTCTGGCCCATGTTTCTGTTCTGTGTGCGGCAAGCAGTGGCCAGCCAAGAGGCACCTTTGGCAGCACCTGATTCGCTATCACCAGCGGGAGGCAGCGGTCACCTGCGGCGTGTGTCTGGCGGTCTGTGCCGACTACCCTGATCTGTCTCGCCACCTGGCACAGCACCACTCGGCCCATCGCCCCAGAGAGGGGACCAACAACTTTGTGTGCCAGACTTGTGGGCGCTACCACAACGCCCGCACCAAACTACAGCAGCACGCTACTGTACACGTGGTACTAGGCCCTGGGCCAGAAGGGCAACCTCCGTCCCTTGGAGACCTCCGGGCTACTTGCGACATGGAGGCCCTGGGGCTCCACCAGCGCACGCATCACTCTGGTGATACAGACTTCCTCACGCCCAAGATGGAGATGACAATGTTGTTTGACTGCGCGGAATGTGGGTTAGCTTTCACCTCTGAGAGGGACTTGAACACTCATGAGGGCACTCATAGAAGCCTCAAAGGATCCTTCAACTTtaatgatgacgatgatgatgatgaagcaTTCCCTTGCGGCAAGTGCGGAGAGGTGTTTGATGATTCGGATGCGCTCATAGAGCACATCCAGGGTGCGCATGGCAAGGTGTTTGCATGTCGACGCTGTGGGGACAAGTCCTTTTCGACATACCTCAACCTGACAAAGCACTATCGGGTGTGTAAGTCCAAGGGGGGGAGGAATCTGAAGGACAGTATTCATCGTTTGATGCTCAGACCTGCTGAGGATCCTTCAAACATGGCTCCCTTAGACGAGAACATGGAGTCGTTAATAAAGGAAGAGTTGATGGAAACAGACACGGGGAGTGATCCTCTCGATGAAGCCGAGGACTCTCCCCTCTCGTCCTCTGGGATACAGGTCAGGAGAGACTTCACTTGTTTGATGGATGAAACGAGAACAAATACCTCACCTTTACAGACGGAAAACTGTGAATCTCTTCCCAACGGAGACTTGGGAGATTTTTCCGAAAACGAATTAGataaatcaaaagaaaattctATCACAAAACATGAACCGAACGAGGAACCTTTCCAAGGTAAACCTGATTCGGTCGGAAAAAGTACGCAGGATCTGGCAGACACTTTGGGGGAAGATGATTCTTGCGATCTTGTACCGGGTACATCGACCAAACTCCAGACTTTAGTCGAGGAGCAGATGGATGCTCTGGGGACAAAGAAACTGGACCATGGAGGGAATTCTTGGGGTATTAACAACGAAGGTTGTGTGGGGACAAATATCGATGAGCGAGCCCCCCGTAGGGACCCATTATTGGCGGAAGCTACGAGTGACGAGTATTTGAACTCTTTAGACAATGCGTTGGATATATTAGAGGCTCAGAATGTGTGA
- Protein Sequence
- MSFDTESYMQLCRLCASYQAIKMEIYGKEGTGRNLVEKIEICLPFKVCEDDHLPKSLCYRCMYLLENFYDFRKNCVNSVSLLESCLTDPEGLEVNPELRLEYERLQSQLREVKGRNKKGEVGETDNSMPRLEPQVPVPNVVGRNGRRPSGEPAKQQTHSSAPVMDDSGDYHEEGGSWDVRTLKRSSKKPTSLLSCPYCTKAFYSQGRLLLHIKCHNGEEVPGAGVNTAGKRPFSCDLCHRSYTLSKHLWGHMNSAHKGDPAVTCPVCGRVCSTCANLEEHKRSKHGQSHLMLSVLYTTLVLVLRSTCVLCLCAGLEDGEVVESTYTDNAEAKEPLEPAFKSESELRVKRQERAGSGKSQGGEVSLLKQTLLKSRKRAANQDEEEMDVEMSKKHAPEAVAPDSNPGNRRKSSKPRKIARCESGEEEEEFTCEVCFDTFPSSEHLMEHGAVHCGYEEEASETSGDRDKPFTCLLCDKSFSVRQALSRHFHACHGIDPSDVDVFGSTSDPLHKQMFVPSAEDMMEMETGIVGGGAEVNSGQDASGKQFFSCEVCIREFHDRGSLWLHMLHAHRDQAGYACGVCLKICGNNDHLGAHWRQHVGGADNRRYVCTVCGRQHDTRKKLVHHVGIHALENGEGGFFDPESFVVQNQAFYSSEHKEKDGGIASDYGASSSSDHWALESPTQTQADNYSCEICYKSFPSEEGLVKHKRNAHKEELAGGGMLPRGSYQLFFVCELCGSSHGSKSERWRHVYQTHCGQATLTCDRPTCGKVFTTQALRTEHCASHHQKQGAVPNTCEVCGKLWGSRVDFWKHMMGVHPDLVALTCGVCLKVLCDLAELKTHVRATHWPLTNEFSCDLCGRPYSNKSKMSRHRKIHGDDSQDPRILENTNSSKKLLSLSGAKNPDLMKKSILKIPDPSTVGLSLDPKRLLHPTLWCETCPHLHFTTVAQLGHHRRTVHNLYPCDLCTKFYSRTTHLLYHVVKAHSNHPELRCSICSKMCRSKSAVAAHVAAKHFPREAKKKKNHQPSFKSAAIKKPSTQTCSLCSKTFWKRSVYRRHYKACRAKNVSKPAPEALACEVCPDIAPTTKTELMTHIRDHHAGHPSFCCPVEGCGRMVRSRSDLELHQKMHDAGKPHATCDLCGNVYNHESRARKHMFLYHKRAELAGLCGVCLKNLPDMERLKEHVVAEHPGNLEAPFTCQVCAKTLSNNSKVCQHVLTCHPSVVACRTCLQVFPDRSDLQTHRKEVHDCYDMVREDQTTDIVKDEMEKKQEVAPLKEGESPPKRSRRSYECDSCGEQLTSPSLLSDHKKRTHSLQVNETKPYHCGVCDKHFSNKTSYWKHINSPIHLNTKMIKSASSNSARGISPIDNKIPLVVLPNLGELDLKLEVSPAKTTRPESKKGYDSSGPCFCSVCGKQWPAKRHLWQHLIRYHQREAAVTCGVCLAVCADYPDLSRHLAQHHSAHRPREGTNNFVCQTCGRYHNARTKLQQHATVHVVLGPGPEGQPPSLGDLRATCDMEALGLHQRTHHSGDTDFLTPKMEMTMLFDCAECGLAFTSERDLNTHEGTHRSLKGSFNFNDDDDDDEAFPCGKCGEVFDDSDALIEHIQGAHGKVFACRRCGDKSFSTYLNLTKHYRVCKSKGGRNLKDSIHRLMLRPAEDPSNMAPLDENMESLIKEELMETDTGSDPLDEAEDSPLSSSGIQVRRDFTCLMDETRTNTSPLQTENCESLPNGDLGDFSENELDKSKENSITKHEPNEEPFQGKPDSVGKSTQDLADTLGEDDSCDLVPGTSTKLQTLVEEQMDALGTKKLDHGGNSWGINNEGCVGTNIDERAPRRDPLLAEATSDEYLNSLDNALDILEAQNV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450847; iTF_01445033; iTF_01446858; iTF_01447794; iTF_01449846;
- 90% Identity
- iTF_01450847;
- 80% Identity
- -