Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010005467.1:5353-15979[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.014 3.8 10.5 1.9 2 21 202 221 201 223 0.93

2 29 0.0019 0.53 13.2 3.0 1 23 241 264 241 264 0.97

3 29 0.00017 0.047 16.6 2.4 2 23 271 293 270 293 0.96

4 29 0.061 17 8.5 0.2 1 23 436 458 436 458 0.95

5 29 0.022 6 9.9 4.3 1 23 476 499 476 499 0.90

6 29 0.14 39 7.4 1.0 1 23 554 577 554 577 0.95

7 29 0.058 16 8.6 0.6 1 23 583 605 583 605 0.97

8 29 0.82 2.2e+02 5.0 1.8 1 23 614 636 614 636 0.94

9 29 0.00017 0.047 16.5 0.2 1 23 696 719 696 719 0.97

10 29 0.28 76 6.4 2.1 2 20 768 788 767 792 0.83

11 29 0.91 2.5e+02 4.8 0.1 2 23 801 823 801 823 0.93

12 29 0.097 26 7.9 0.3 2 23 830 852 829 852 0.94

13 29 7e-05 0.019 17.8 1.4 1 23 859 881 859 881 0.98

14 29 0.017 4.7 10.2 1.8 1 23 966 989 966 989 0.94

15 29 0.012 3.3 10.7 0.5 2 23 996 1018 995 1018 0.92

16 29 0.94 2.6e+02 4.8 0.9 2 21 1044 1063 1043 1064 0.92

17 29 4.2 1.1e+03 2.8 0.1 11 23 1089 1101 1078 1102 0.80

18 29 0.00023 0.063 16.1 0.5 1 23 1108 1132 1108 1132 0.97

19 29 0.5 1.4e+02 5.7 1.3 2 23 1140 1162 1140 1162 0.93

20 29 0.15 41 7.3 4.4 1 23 1200 1223 1200 1223 0.97

21 29 0.0092 2.5 11.1 0.3 3 23 1229 1250 1228 1250 0.95

22 29 0.0053 1.4 11.9 0.2 1 23 1292 1315 1292 1315 0.97

23 29 8.4e-05 0.023 17.5 1.2 1 23 1325 1349 1325 1349 0.91

24 29 2.1 5.7e+02 3.7 2.2 2 23 1411 1433 1410 1433 0.93

25 29 1.7 4.7e+02 3.9 0.1 2 23 1440 1461 1439 1461 0.95

26 29 2.7 7.4e+02 3.3 0.2 2 23 1517 1539 1517 1539 0.95

27 29 0.0016 0.43 13.5 0.1 1 23 1556 1578 1556 1578 0.95

28 29 0.00015 0.041 16.7 0.0 1 23 1596 1619 1596 1619 0.95

29 29 0.021 5.8 10.0 0.7 1 21 1623 1644 1623 1645 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.014	3.8	10.5	1.9	2	21	202	221	201	223	0.93
2	29	0.0019	0.53	13.2	3.0	1	23	241	264	241	264	0.97
3	29	0.00017	0.047	16.6	2.4	2	23	271	293	270	293	0.96
4	29	0.061	17	8.5	0.2	1	23	436	458	436	458	0.95
5	29	0.022	6	9.9	4.3	1	23	476	499	476	499	0.90
6	29	0.14	39	7.4	1.0	1	23	554	577	554	577	0.95
7	29	0.058	16	8.6	0.6	1	23	583	605	583	605	0.97
8	29	0.82	2.2e+02	5.0	1.8	1	23	614	636	614	636	0.94
9	29	0.00017	0.047	16.5	0.2	1	23	696	719	696	719	0.97
10	29	0.28	76	6.4	2.1	2	20	768	788	767	792	0.83
11	29	0.91	2.5e+02	4.8	0.1	2	23	801	823	801	823	0.93
12	29	0.097	26	7.9	0.3	2	23	830	852	829	852	0.94
13	29	7e-05	0.019	17.8	1.4	1	23	859	881	859	881	0.98
14	29	0.017	4.7	10.2	1.8	1	23	966	989	966	989	0.94
15	29	0.012	3.3	10.7	0.5	2	23	996	1018	995	1018	0.92
16	29	0.94	2.6e+02	4.8	0.9	2	21	1044	1063	1043	1064	0.92
17	29	4.2	1.1e+03	2.8	0.1	11	23	1089	1101	1078	1102	0.80
18	29	0.00023	0.063	16.1	0.5	1	23	1108	1132	1108	1132	0.97
19	29	0.5	1.4e+02	5.7	1.3	2	23	1140	1162	1140	1162	0.93
20	29	0.15	41	7.3	4.4	1	23	1200	1223	1200	1223	0.97
21	29	0.0092	2.5	11.1	0.3	3	23	1229	1250	1228	1250	0.95
22	29	0.0053	1.4	11.9	0.2	1	23	1292	1315	1292	1315	0.97
23	29	8.4e-05	0.023	17.5	1.2	1	23	1325	1349	1325	1349	0.91
24	29	2.1	5.7e+02	3.7	2.2	2	23	1411	1433	1410	1433	0.93
25	29	1.7	4.7e+02	3.9	0.1	2	23	1440	1461	1439	1461	0.95
26	29	2.7	7.4e+02	3.3	0.2	2	23	1517	1539	1517	1539	0.95
27	29	0.0016	0.43	13.5	0.1	1	23	1556	1578	1556	1578	0.95
28	29	0.00015	0.041	16.7	0.0	1	23	1596	1619	1596	1619	0.95
29	29	0.021	5.8	10.0	0.7	1	21	1623	1644	1623	1645	0.93

Sequence Information

Coding Sequence: ATGTCTTTCGATACGGAGAGCTACATGCAGCTTTGTCGTCTGTGCGCGTCTTATCAAGCCATCAAAATGGAAATCTACGGTAAAGAGGGAACGGGACGAAATTTGGTGGAGAAGATTGAGATCTGTCTTCCGTTCAAGgTTTGCCAAGACGACCATCTCCCCAAGTCACTCTGCTATCGCTGCATGTACCTTCTGGAGAACTTCTACGACTTCCGTAAAAACTGCGTCAATTCTGTGTCTCTGCTGGAGAGCTGTCTCACCGACCCGGACGGGCTGGAAGTGAATCCGGAACTGAGACTGGAGTACGAACGTCTCCAGAGTCAACTGCGGGAAGTGAAATGTCGCAACAAGAAGGGGGAGGTCGGAGAGACAGACAACTCCATGCCCCGATTGGAGCCGCAGGTACTGGGCCAGGGCCCGTACACCGTCCCTGTGCCGAACGTGGTGGACCGTAACGGGCGTCGACCCTCCGGGGAACCCGCCAAGCAACAAGCCCATCCCTCTGTGCCCGTCATGGACGACTCTGGAGACTACCACGAGGAAGGCAGGAGTTGGGACGTTCCCACGCTCAAACGAAGCTCCAAGAAGCCAACATCGCTACTGTCCTGCCCCTACTGCACCAAGGCCTTCTACTCCCAAGGCCGACTCTCGCTCCACATAAAGTGCCACAACGGAGAGGAGGTGCCCGGCGCCGGGGCCAACACCGCGGGCAAACGGCCCTTCTCGTGCGACCTGTGTCATCGCTCCTACACGCTCTCCAAGCACCTGTGGGGGCACATGAACTCTGCTCACAAAGGGGACCCTGCTGTTACGTGTCCCGTGTGTGGTCGCGTCTGCTCCACTTGCGCCAACTTGGAGGAACACAAGCGCTCCAAACACGGTCGGTCCCGCCTCCTGCTGTCTATGTTGTACGCAACACTAGTGTTTGTGTCGAGGTGTACATGTGTGTTGTGTTTGTGCGCAGGTCTAGAGGACGGTGAGGTGGTGGAGTCCACCTACACTGACAATGCCGAGGCCAAGGAGCCTCTGGAGCGCGCTTTCAAGTCTGAGTCGGAGTTGCGGGTCAAGCGGCAGGAGAGAGCTGGGGGCGGGAAGACTCAGGGGGGGGAGGTGAGCCTTCTCAAGCAGACGCTGCTCAAGTCTCGCAAGCGAGCAGCAAACCGGGACGGAGAGGAGATAGATGTCGAGGCGGCAAAGAAGCATGCCCCCGAGGCGGTGCCTCCGGACAGCAACCCTGGGAACCGCCGGAAGAGCTCCAAGCCGAGGAAGATCGCCCGATGCGAGAGCGGAGAAGAGGAGGAGGAGTACACTTGCGAGGTCTGCTTCGACACTTTCCCCAGCAGCGAGCATCTCGTGGAGCACGGAGCCGTTCATTGTGGCTACGAGGAAGAAGCGTCGGAGACCTCCGGGGACAGAGACAAGCCGTTCACTTGTCTTCTCTGTGACAAGAGCTTCTCTGTACGTCAAGCGCTGAGCCGGCATTTCCACGCGTGCCACGGCATTGACCCGTCGGATGTGGACGTGTTTGGGTCTACGTCCGACCCGCTCCACAAGCAGATGTTTGTGCCCTCCGCGGAAGACATGATGGAGATGGAGACCGGGATAGTGGGAGGGGGGGCAGAGGTGAACTCTGGCCAGGACGCCTCAGGAAAACAGTTCTTCTCCTGTGAGGTATGCATCAGAGAGTTTCATGACAGAGGCAGCTTGTGGCTGCACATGCTGCACGCCCACCGTGACCAGGCTGGGTATGCCTGCGGGGTGTGTCTCAAGATCTGCGGCAACAATGACCACTTGGGTGCGCACTGGCGGCAGCATGTCGGAGGGGCCGACAATAGACGATACGTGTGCACAGTGTGCGGCCGACAGCACGACACCCGCAAGAAGCTGGTTCACCATGTGGGCATTCACGCCCTGGAGAACGGGGAGGGGGGCTTTTTCGACCCCGAGAGCTTTGTTGTTCAGAACCAGGCGTTCTACAGCTCAGAGCACAAAGAAAAGGATGGAGGGGTTGTGTCTGACTACGGCGCGTCGAGCGGCTCGGACCGTTGGGCTTTGGAGAGCCCGACTCAAACACACGCTGATAACTACTCCTGTGAGATATGCTACAAGTCATTCCCCTCCGAGGAGGGTCTGGTGAAGCACAAGAGGAACGCCCACAAGGAGGAGCTCGCAGGGGGAGGAACGCTACCTCGCGGCTCATATCAACTGTTCTTTGTGTGCGAGCTGTGCGGCTCTTCGCACGGCTCCAAGTCTGAACGCTGGCGGCACGTGTATCAGACCCATTGTGGTCAGGCGACCCTCACCTGCGACCGTCCTACCTGCGGGAAGGTGTTTACAACGCAGGCGCTTCGAACAGAACATTGTGCCTCACATCATCAGAAGCAGGGGGCGGTTCCCAACACTTGTGAAGTGTGCGGGAAGCTGTGGGGGTCCCGCGTTGACTTTTGGAAGCACATGATGGGGGTCCACCCGGACTTGGTGGCGCTCACCTGCGGGGTCTGCCTCAAGGTGCTGTGTGACTTGGTGGAGCTGAAGACACATGTCCGCGCTACACATTGGCCGCTCACGAACGAGTTCTCGTGTGACTTATGTGGTCGGCCGTACTCCAACAAGTCCAAGATGTCGCGCCACCGGAAGATACACGGGGACGACTCCCAAGACCCTCGTATTTTGGAAAACACAAACTCTTCAAAGAAACACTTGTACTTGTCAGGCGCAAAGAATCCGGATCTGATGAAGAAGAGCATTTTGAAAATTCCTGATCCATCTGCGGTCGGATTGTCCTTGGACCCCAAGAGGCTCCTGCACCCCACCCTGTGGTGTGAGACTTGCCCTCATCTGCACTTTACAACTGTGGCGCAGCTGGGCCACCACCGGCGTACCGTACACAACCTGTATCCCTGCGACCTCTGCACCAAGTTCTACAGCCGCACCACGCATCTGCTGTACCATGTGGTGAAGGCGCACAGCAACCACCCTGAGCTGAGGTGCTCGGTCTGCAGCAAGATGTGCCGCAGCAAGTCCGCTGTGGCCGCTCATATCGCCGCCAAACACTTCCCTCGGGAGGCAAAGAAGCAGAATCATCAGCCCAGCTTCAAGTCCGCAGCAACCAAGAAACCCTCGACACAAACATGTTCACTTTGTTCCAAGACGTTCTGGAAGCGCTCGGTCTATAGGAGGCACTACAAAGCTTGTCGTGCCAAGAACGCGTTCAAACCTGCACCCGAGGCCTTGGTGTGCGAAGTCTGCCCTGATATCGCGCCGACCACCAAGACTGAACTCATGACGCACATCCGTGAGCATCATGCGGGGCATCCCAGCTTCTGTTGTCCGGTGGAGGGCTGTGGCCGAATGGTCCGCAGTCGGAGTGATCTGGAGCTGCACCAAAAGATGCACGACGAGGGGAAGCCCCACGCGACTTGCGACCTGTGTGGGAACGTGTACAACCACGAGTCGCGCGCCAGGAAGCACATGTTCCTCTATCACAAACGCGCAGAGTTGGCGGGACTCTGTGGGGTGTGCCTCAAAAACTTGCCCGACATGGAGCGCCTCAAGGAACACGTGGTCGCTGAACACCCGGGTAACTTGGAGGCGCCGTTCACATGCCAGGTGTGTGCCAAGACGCTCTCTAACAACTCCAAGGTGTGCCAGCATGTATTGACGTGCCACCCATCAGTTGTGGCATGTCGAACGTGTCTGCAGGTGTTCCCTGACCGCTCGGATCTGCAGACGCACAGGAAGGAGGTCCATGACTGCTACGATATGGTAAGAGAAGACCAAACCACCGACAATGTTAAAGATGAAATGGAAAAGAAACAAGAGGTGGCCCCACTTAAAGAAGGTGAGTCTCCACCCAAGCGTTCCAGACGGTCCTACGAGTGCGACTCTTGCGGAGAACAACTAACGTCCCCGTCGTTGCTGAGCGACCACAAGAAACGATCACATAGTTTGCAGGTGAACGAAACAAAACCCTATCACTGCGGTGTCTGCGATAAGAACTTCTCTAACAAGACCAGTTACTGGAAGCACATCAACTCTCCAATACACCTCAACACCAAAATGATAAAATCAGCCTCTTCAAACAGCGCCAGAGGCATCTCGCCTATAGACAACAAGATACCATTGGTGGTCCTACCTAATCTGGGTGAGCTGGATCTAAAGCTAGAGGCGAGTCCTGCCAAGACCACTCGCCCCGAGTCTAAGAAGGGGTACGATAGCTCTGGACCGTGTTTCTGTTCTGTGTGCGGCAAGCAGTGGCCCGCCAAGAGGCACCTTTGGCAGCACCTGATTCGCTATCACCAGCGGGAGGCGGCGGTCACCTGCGGCGTGTGCCTGGCGGTCTGCGCCGACTACCCCGACCTGTCTCGCCACCTGGCGCAGCACCAATCATCGGCCCATCGCCCCAGAGAGGGGACCAACAACTTTGTGTGCCAGACTTGTGGGCGCTACCACAACGCCCGCACCAAACTGCAGCAGCACGCTACTATACACGTGGTACTAGGCCCAGGGCCGGAAGGGCAACCTCCGTCCCTCGGGGACCTCCGGGCCACCTGCGACACTTGTCTGGAAAGTTTCCCCGACATGGAGGCCCTAGGGTTCCACCAGCGCACGCAGCACTGTGGCGATACGGACATCCTCACGCCCAAGATGGAGATGACGATGTTGTTTGACTGCGTGGAATGCGGGCTAGCTTTCAGCTCCGAGAGGGACTTGAACACTCACGAGGGCACTCACAGAAGCCTCCAAGGATCCTTCAACTTTAATGACGAGGATGATGATGAAGCATTCCCTTGCGGCAAGTGCGGAGAGGTGTTTGACGATTCGGACGCGCTGATAGAGCACATCCAGGGCGCGCATGGCAAGGTCTTTGCATGTCGACGCTGTGGGGACAAGTCCTTTTCGACCTACCTCAACTTGACAAAGCACTATCGGGTGTGTAAGTCCAAGGTGGGGAGGAATCTGAAGGACAGGACGCTCAGACCTGCTGAGGATCCTTCAAACATGGCTCCCTTAGACGAGAACATGGAGTCGTTATTAATAAAGGAAGAGTTGATGGAAACGGACACGGGGAGTGATCCTCTCGACGAAGCTGAGGACTCTCCTCTCTCGTCCTCCGGAATACAGGTCAGGAGAGACTTCACTTGTTTGATGGATGAAACGGGAACAATTACCTCACCTTTACAGACGGAAAACTGTGAATCTCTCCCCAACGGAGACTTGGGAGATTTGTCCGAAAGTGAACTCGATGAATCAAATGAAAATTCTATCACAAAACATGAACCCAACGAGGAACCTTTCCAGGGTGGACCCGAATCGGTCGGAAGAAGTACGGAGGATCTGGCGGACACACCGGGGGCAGATATTTCAAACGGAAGCACGGATTCTTGCGGTCTTGTACCGGGTACATCGACCAAACTCCAGACTTTAGTCGAGGAGCAGATGGACGCTCTGGGGACAAACAAACTGAACCACGGAGGGAATTCTTGGGGTATCGACAACGAAGATTGTGTGGGGACAGATATCGATGAGCGGACCACCTCTCGCGGGGACCAATTGTCGGCGGAAGCTACGAGTGACGAGTATTTGAACTCGTTAGACAACGCGTTGGATATATTAGAGGCCCAGAATGTGTGA
Protein Sequence: MSFDTESYMQLCRLCASYQAIKMEIYGKEGTGRNLVEKIEICLPFKVCQDDHLPKSLCYRCMYLLENFYDFRKNCVNSVSLLESCLTDPDGLEVNPELRLEYERLQSQLREVKCRNKKGEVGETDNSMPRLEPQVLGQGPYTVPVPNVVDRNGRRPSGEPAKQQAHPSVPVMDDSGDYHEEGRSWDVPTLKRSSKKPTSLLSCPYCTKAFYSQGRLSLHIKCHNGEEVPGAGANTAGKRPFSCDLCHRSYTLSKHLWGHMNSAHKGDPAVTCPVCGRVCSTCANLEEHKRSKHGRSRLLLSMLYATLVFVSRCTCVLCLCAGLEDGEVVESTYTDNAEAKEPLERAFKSESELRVKRQERAGGGKTQGGEVSLLKQTLLKSRKRAANRDGEEIDVEAAKKHAPEAVPPDSNPGNRRKSSKPRKIARCESGEEEEEYTCEVCFDTFPSSEHLVEHGAVHCGYEEEASETSGDRDKPFTCLLCDKSFSVRQALSRHFHACHGIDPSDVDVFGSTSDPLHKQMFVPSAEDMMEMETGIVGGGAEVNSGQDASGKQFFSCEVCIREFHDRGSLWLHMLHAHRDQAGYACGVCLKICGNNDHLGAHWRQHVGGADNRRYVCTVCGRQHDTRKKLVHHVGIHALENGEGGFFDPESFVVQNQAFYSSEHKEKDGGVVSDYGASSGSDRWALESPTQTHADNYSCEICYKSFPSEEGLVKHKRNAHKEELAGGGTLPRGSYQLFFVCELCGSSHGSKSERWRHVYQTHCGQATLTCDRPTCGKVFTTQALRTEHCASHHQKQGAVPNTCEVCGKLWGSRVDFWKHMMGVHPDLVALTCGVCLKVLCDLVELKTHVRATHWPLTNEFSCDLCGRPYSNKSKMSRHRKIHGDDSQDPRILENTNSSKKHLYLSGAKNPDLMKKSILKIPDPSAVGLSLDPKRLLHPTLWCETCPHLHFTTVAQLGHHRRTVHNLYPCDLCTKFYSRTTHLLYHVVKAHSNHPELRCSVCSKMCRSKSAVAAHIAAKHFPREAKKQNHQPSFKSAATKKPSTQTCSLCSKTFWKRSVYRRHYKACRAKNAFKPAPEALVCEVCPDIAPTTKTELMTHIREHHAGHPSFCCPVEGCGRMVRSRSDLELHQKMHDEGKPHATCDLCGNVYNHESRARKHMFLYHKRAELAGLCGVCLKNLPDMERLKEHVVAEHPGNLEAPFTCQVCAKTLSNNSKVCQHVLTCHPSVVACRTCLQVFPDRSDLQTHRKEVHDCYDMVREDQTTDNVKDEMEKKQEVAPLKEGESPPKRSRRSYECDSCGEQLTSPSLLSDHKKRSHSLQVNETKPYHCGVCDKNFSNKTSYWKHINSPIHLNTKMIKSASSNSARGISPIDNKIPLVVLPNLGELDLKLEASPAKTTRPESKKGYDSSGPCFCSVCGKQWPAKRHLWQHLIRYHQREAAVTCGVCLAVCADYPDLSRHLAQHQSSAHRPREGTNNFVCQTCGRYHNARTKLQQHATIHVVLGPGPEGQPPSLGDLRATCDTCLESFPDMEALGFHQRTQHCGDTDILTPKMEMTMLFDCVECGLAFSSERDLNTHEGTHRSLQGSFNFNDEDDDEAFPCGKCGEVFDDSDALIEHIQGAHGKVFACRRCGDKSFSTYLNLTKHYRVCKSKVGRNLKDRTLRPAEDPSNMAPLDENMESLLIKEELMETDTGSDPLDEAEDSPLSSSGIQVRRDFTCLMDETGTITSPLQTENCESLPNGDLGDLSESELDESNENSITKHEPNEEPFQGGPESVGRSTEDLADTPGADISNGSTDSCGLVPGTSTKLQTLVEEQMDALGTNKLNHGGNSWGIDNEDCVGTDIDERTTSRGDQLSAEATSDEYLNSLDNALDILEAQNV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448853;
90% Identity: iTF_01445033; iTF_01446858; iTF_01448853;
80% Identity: -